Result of FASTA (ccds) for pF1KB9989
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB9989, 579 aa
  1>>>pF1KB9989 579 - 579 aa - 579 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 7.3461+/-0.00108; mu= 9.9177+/- 0.064
 mean_var=159.6235+/-33.601, 0's: 0 Z-trim(108.4): 147  B-trim: 430 in 1/49
 Lambda= 0.101514
 statistics sampled from 10047 (10214) to 10047 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.672), E-opt: 0.2 (0.314), width:  16
 Scan time:  3.540

The best scores are:                                      opt bits E(32554)
CCDS5081.1 CDC40 gene_id:51362|Hs108|chr6          ( 579) 3961 592.7 4.2e-169
CCDS32157.1 WDR25 gene_id:79446|Hs108|chr14        ( 544)  529 90.0 8.2e-18
CCDS6981.1 WDR5 gene_id:11091|Hs108|chr9           ( 334)  463 80.2 4.6e-15
CCDS340.1 SNRNP40 gene_id:9410|Hs108|chr1          ( 357)  411 72.6 9.5e-13


>>CCDS5081.1 CDC40 gene_id:51362|Hs108|chr6               (579 aa)
 initn: 3961 init1: 3961 opt: 3961  Z-score: 3149.3  bits: 592.7 E(32554): 4.2e-169
Smith-Waterman score: 3961; 100.0% identity (100.0% similar) in 579 aa overlap (1-579:1-579)

               10        20        30        40        50        60
pF1KB9 MSAAIAALAASYGSGSGSESDSDSESSRCPLPAADSLMHLTKSPSSKPSLAVAVDSAPEV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS50 MSAAIAALAASYGSGSGSESDSDSESSRCPLPAADSLMHLTKSPSSKPSLAVAVDSAPEV
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB9 AVKEDLETGVHLDPAVKEVQYNPTYETMFAPEFGPENPFRTQQMAAPRNMLSGYAEPAHI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS50 AVKEDLETGVHLDPAVKEVQYNPTYETMFAPEFGPENPFRTQQMAAPRNMLSGYAEPAHI
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB9 NDFMFEQQRRTFATYGYALDPSLDNHQVSAKYIGSVEEAEKNQGLTVFETGQKKTEKRKK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS50 NDFMFEQQRRTFATYGYALDPSLDNHQVSAKYIGSVEEAEKNQGLTVFETGQKKTEKRKK
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB9 FKENDASNIDGFLGPWAKYVDEKDVAKPSEEEQKELDEITAKRQKKGKQEEEKPGEEKTI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS50 FKENDASNIDGFLGPWAKYVDEKDVAKPSEEEQKELDEITAKRQKKGKQEEEKPGEEKTI
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB9 LHVKEMYDYQGRSYLHIPQDVGVNLRSTMPPEKCYLPKKQIHVWSGHTKGVSAVRLFPLS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS50 LHVKEMYDYQGRSYLHIPQDVGVNLRSTMPPEKCYLPKKQIHVWSGHTKGVSAVRLFPLS
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KB9 GHLLLSCSMDCKIKLWEVYGERRCLRTFIGHSKAVRDICFNTAGTQFLSAAYDRYLKLWD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS50 GHLLLSCSMDCKIKLWEVYGERRCLRTFIGHSKAVRDICFNTAGTQFLSAAYDRYLKLWD
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KB9 TETGQCISRFTNRKVPYCVKFNPDEDKQNLFVAGMSDKKIVQWDIRSGEIVQEYDRHLGA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS50 TETGQCISRFTNRKVPYCVKFNPDEDKQNLFVAGMSDKKIVQWDIRSGEIVQEYDRHLGA
              370       380       390       400       410       420

              430       440       450       460       470       480
pF1KB9 VNTIVFVDENRRFVSTSDDKSLRVWEWDIPVDFKYIAEPSMHSMPAVTLSPNGKWLACQS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS50 VNTIVFVDENRRFVSTSDDKSLRVWEWDIPVDFKYIAEPSMHSMPAVTLSPNGKWLACQS
              430       440       450       460       470       480

              490       500       510       520       530       540
pF1KB9 MDNQILIFGAQNRFRLNKKKIFKGHMVAGYACQVDFSPDMSYVISGDGNGKLNIWDWKTT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS50 MDNQILIFGAQNRFRLNKKKIFKGHMVAGYACQVDFSPDMSYVISGDGNGKLNIWDWKTT
              490       500       510       520       530       540

              550       560       570         
pF1KB9 KLYSRFKAHDKVCIGAVWHPHETSKVITCGWDGLIKLWD
       :::::::::::::::::::::::::::::::::::::::
CCDS50 KLYSRFKAHDKVCIGAVWHPHETSKVITCGWDGLIKLWD
              550       560       570         

>>CCDS32157.1 WDR25 gene_id:79446|Hs108|chr14             (544 aa)
 initn: 381 init1: 190 opt: 529  Z-score: 433.3  bits: 90.0 E(32554): 8.2e-18
Smith-Waterman score: 537; 25.8% identity (59.9% similar) in 387 aa overlap (209-578:163-543)

      180       190       200       210       220       230        
pF1KB9 KKFKENDASNIDGFLGPWAKYVDEKDVAKPSEEEQKELDEITAKRQKKGKQEEEKPGEEK
                                     : ...:  : ..    .. .:..    :  
CCDS32 RFKQVKLSRNFPKSSFHAQSESETVGKNGSSFQKKKCEDCVVPYTPRRLRQRQALSTETG
            140       150       160       170       180       190  

      240       250       260       270             280       290  
pF1KB9 TILHVKEMYDYQGRSYLHIPQDVGVNLRSTMPP------EKCYLPKKQIHVWSGHTKGVS
           :. .    ::.    :  :: ..   . :      ..  .:.: .    ::   :.
CCDS32 KGKDVEPQGPPAGRA--PAPLYVGPGVSEFIQPYLNSHYKETTVPRKVLFHLRGHRGPVN
            200         210       220       230       240       250

              300       310       320       330       340       350
pF1KB9 AVRLFPL--SGHLLLSCSMDCKIKLWEVYGERRCLRTFIGHSKAVRDICFNTAGTQFLSA
       ...  :.  ..:.::: :::  .:.:..    .::.:.  :..:::   .   : ..::.
CCDS32 TIQWCPVLSKSHMLLSTSMDKTFKVWNAVDSGHCLQTYSLHTEAVRAARWAPCGRRILSG
              260       270       280       290       300       310

              360        370       380       390       400         
pF1KB9 AYDRYLKLWDTETG-QCISRFTNRKVPYCVKFNPDEDKQNLFVAGMSDKKIVQWDIRSGE
       ..:  :.: : ::: : .:  .. ..   .::.: .  .:.:. :  ....  ::::.:.
CCDS32 GFDFALHLTDLETGTQLFSGRSDFRIT-TLKFHPKD--HNIFLCGGFSSEMKAWDIRTGK
              320       330        340         350       360       

     410       420       430           440        450       460    
pF1KB9 IVQEYDRHLGAVNTIVFVDENRRFVSTSD----DKSLR-VWEWDIPVDFKYIAEPSMH--
       ... :   .  .  :.:. :. .:.:..:    :.. : .  ::. .. : :..  .:  
CCDS32 VMRSYKATIQQTLDILFLREGSEFLSSTDASTRDSADRTIIAWDFRTSAK-ISNQIFHER
       370       380       390       400       410        420      

             470       480       490       500       510       520 
pF1KB9 -SMPAVTLSPNGKWLACQSMDNQILIFGAQNRFRLNKKKIFKGHMVAGYACQVDFSPDMS
        . :...: :    .  :.  : . .:..   .:..... ..:: : ::.   . ::  .
CCDS32 FTCPSLALHPREPVFLAQTNGNYLALFSTVWPYRMSRRRRYEGHKVEGYSVGCECSPGGD
        430       440       450       460       470       480      

             530       540       550       560       570         
pF1KB9 YVISGDGNGKLNIWDWKTTKLYSRFKAHDKVCIGAVWHPHETSKVITCGWDGLIKLWD
        ...:...:.. .....:..    ...: ..:.:...::   : . ::.: : .:.: 
CCDS32 LLVTGSADGRVLMYSFRTASRACTLQGHTQACVGTTYHPVLPSVLATCSWGGDMKIWH
        490       500       510       520       530       540    

>>CCDS6981.1 WDR5 gene_id:11091|Hs108|chr9                (334 aa)
 initn: 552 init1: 164 opt: 463  Z-score: 383.9  bits: 80.2 E(32554): 4.6e-15
Smith-Waterman score: 463; 27.8% identity (62.2% similar) in 299 aa overlap (285-578:42-330)

          260       270       280       290       300       310    
pF1KB9 LHIPQDVGVNLRSTMPPEKCYLPKKQIHVWSGHTKGVSAVRLFPLSGHLLLSCSMDCKIK
                                     .::::.::.:.. : .:. : : : :  ::
CCDS69 AARAQPTPSSSATQSKPTPVKPNYALKFTLAGHTKAVSSVKFSP-NGEWLASSSADKLIK
              20        30        40        50         60        70

          320       330       340       350       360       370    
pF1KB9 LWEVYGERRCLRTFIGHSKAVRDICFNTAGTQFLSAAYDRYLKLWDTETGQCISRFTNRK
       .: .: . .  .:. ::. .. :. ... .. ..::. :. ::.::. .:.:.. . ...
CCDS69 IWGAY-DGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHS
                80        90       100       110       120         

           380       390       400       410       420       430   
pF1KB9 -VPYCVKFNPDEDKQNLFVAGMSDKKIVQWDIRSGEIVQEYDRHLGAVNTIVFVDENRRF
          .: .:::   ..::.:.:  :...  ::...:. ..    :   :... :  ..  .
CCDS69 NYVFCCNFNP---QSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLI
     130          140       150       160       170       180      

           440       450       460       470       480       490   
pF1KB9 VSTSDDKSLRVWEWDIPVDFKYIAEPSMHSMPAVTLSPNGKWLACQSMDNQILIFGAQNR
       ::.: :   :.:.      .: . . .   .  : .:::::..   ..:: . ..   . 
CCDS69 VSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLW---DY
        190       200       210       220       230       240      

           500       510        520       530       540       550  
pF1KB9 FRLNKKKIFKGHMVAGYACQVDFS-PDMSYVISGDGNGKLNIWDWKTTKLYSRFKAHDKV
        . .  : . ::    :   ..::    ....::. .. . ::. .: .. .....:  :
CCDS69 SKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDV
           250       260       270       280       290       300   

            560       570               
pF1KB9 CIGAVWHPHETSKVITCGW---DGLIKLWD   
        :... :: :.  .:. .    :  ::::    
CCDS69 VISTACHPTEN--IIASAALENDKTIKLWKSDC
           310         320       330    

>>CCDS340.1 SNRNP40 gene_id:9410|Hs108|chr1               (357 aa)
 initn: 272 init1: 166 opt: 411  Z-score: 342.3  bits: 72.6 E(32554): 9.5e-13
Smith-Waterman score: 411; 26.4% identity (58.1% similar) in 296 aa overlap (271-562:49-339)

              250       260       270       280       290       300
pF1KB9 LHVKEMYDYQGRSYLHIPQDVGVNLRSTMPPEKCYLPKKQIHVWSGHTKGVSAVRLFPLS
                                     : .:   .  : . :::   :   .. : .
CCDS34 RQRHELLLGAGSGPGAGQQQATPGALLQAGPPRCSSLQAPIMLLSGHEGEVYCCKFHP-N
       20        30        40        50        60        70        

              310       320       330       340       350       360
pF1KB9 GHLLLSCSMDCKIKLWEVYGERRCLRTFIGHSKAVRDICFNTAGTQFLSAAYDRYLKLWD
       :  : : ..:  : ::.:::.     :. ::: :: .. .:: :....::. :. . .::
CCDS34 GSTLASAGFDRLILLWNVYGDCDNYATLKGHSGAVMELHYNTDGSMLFSASTDKTVAVWD
        80        90       100       110       120       130       

              370       380       390       400       410       420
pF1KB9 TETGQCISRFTNRKVPYCVKFNPDEDKQNLFVAGMSDKKIVQWDIRSGEIVQEYDRHLGA
       .:::. ..:. .. . .  .  : .   .:  .: .:  .  ::::.   .: . ..   
CCDS34 SETGERVKRLKGH-TSFVNSCYPARRGPQLVCTGSDDGTVKLWDIRKKAAIQTF-QNTYQ
       140       150        160       170       180       190      

              430       440       450       460       470       480
pF1KB9 VNTIVFVDENRRFVSTSDDKSLRVWEWDIPVDFKYIAEPSMHSMPAVTLSPNGKWLACQS
       : ...: : . ...: . :....::.      . :  .    :. ...:: .:..:  ..
CCDS34 VLAVTFNDTSDQIISGGIDNDIKVWDLR-QNKLTYTMRGHADSVTGLSLSSEGSYLLSNA
         200       210       220        230       240       250    

              490         500         510       520       530      
pF1KB9 MDNQILIFGAQNRFRLNKK--KIFKG--HMVAGYACQVDFSPDMSYVISGDGNGKLNIWD
       ::: . .. ..  :  ...  :::.:  :       . ..::: : . .:...  . .::
CCDS34 MDNTVRVWDVRP-FAPKERCVKIFQGNVHNFEKNLLRCSWSPDGSKIAAGSADRFVYVWD
          260        270       280       290       300       310   

        540       550       560       570          
pF1KB9 WKTTKLYSRFKAHDKVCIGAVWHPHETSKVITCGWDGLIKLWD 
         . ..  .. .:      ...:: :                  
CCDS34 TTSRRILYKLPGHAGSINEVAFHPDEPIIISASSDKRLYMGEIQ
           320       330       340       350       




579 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sat Nov  5 18:49:47 2016 done: Sat Nov  5 18:49:48 2016
 Total Scan time:  3.540 Total Display time:  0.010

Function used was FASTA [36.3.4 Apr, 2011]
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