FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KB0947, 178 aa 1>>>pF1KB0947 178 - 178 aa - 178 aa Library: /omim/omim.rfq.tfa 60827320 residues in 85289 sequences Statistics: Expectation_n fit: rho(ln(x))= 4.8982+/-0.000318; mu= 15.4345+/- 0.020 mean_var=69.2844+/-13.989, 0's: 0 Z-trim(116.5): 2 B-trim: 0 in 0/53 Lambda= 0.154084 statistics sampled from 27788 (27790) to 27788 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.726), E-opt: 0.2 (0.326), width: 16 Scan time: 5.620 The best scores are: opt bits E(85289) NP_001265485 (OMIM: 604225) actin-related protein ( 178) 1216 278.6 3.6e-75 NP_001274151 (OMIM: 604225) actin-related protein ( 177) 1198 274.6 5.7e-74 >>NP_001265485 (OMIM: 604225) actin-related protein 2/3 (178 aa) initn: 1216 init1: 1216 opt: 1216 Z-score: 1470.6 bits: 278.6 E(85289): 3.6e-75 Smith-Waterman score: 1216; 100.0% identity (100.0% similar) in 178 aa overlap (1-178:1-178) 10 20 30 40 50 60 pF1KB0 MPAYHSSLMDPDTKLIGNMALLPIRSQFKGPAPRETKDTDIVDEAIYYFKANVFFKNYEI :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 MPAYHSSLMDPDTKLIGNMALLPIRSQFKGPAPRETKDTDIVDEAIYYFKANVFFKNYEI 10 20 30 40 50 60 70 80 90 100 110 120 pF1KB0 KNEADRTLIYITLYISECLKKLQKCNSKSQGEKEMYTLGITNFPIPGEPGFPLNAIYAKP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 KNEADRTLIYITLYISECLKKLQKCNSKSQGEKEMYTLGITNFPIPGEPGFPLNAIYAKP 70 80 90 100 110 120 130 140 150 160 170 pF1KB0 ANKQEDEVMRAYLQQLRQETGLRLCEKVFDPQNDKPSKWWTCFVKRQFMNKSLSGPGQ :::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 ANKQEDEVMRAYLQQLRQETGLRLCEKVFDPQNDKPSKWWTCFVKRQFMNKSLSGPGQ 130 140 150 160 170 >>NP_001274151 (OMIM: 604225) actin-related protein 2/3 (177 aa) initn: 842 init1: 842 opt: 1198 Z-score: 1449.0 bits: 274.6 E(85289): 5.7e-74 Smith-Waterman score: 1198; 99.4% identity (99.4% similar) in 178 aa overlap (1-178:1-177) 10 20 30 40 50 60 pF1KB0 MPAYHSSLMDPDTKLIGNMALLPIRSQFKGPAPRETKDTDIVDEAIYYFKANVFFKNYEI :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 MPAYHSSLMDPDTKLIGNMALLPIRSQFKGPAPRETKDTDIVDEAIYYFKANVFFKNYEI 10 20 30 40 50 60 70 80 90 100 110 120 pF1KB0 KNEADRTLIYITLYISECLKKLQKCNSKSQGEKEMYTLGITNFPIPGEPGFPLNAIYAKP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 KNEADRTLIYITLYISECLKKLQKCNSKSQGEKEMYTLGITNFPIPGEPGFPLNAIYAKP 70 80 90 100 110 120 130 140 150 160 170 pF1KB0 ANKQEDEVMRAYLQQLRQETGLRLCEKVFDPQNDKPSKWWTCFVKRQFMNKSLSGPGQ :::::: ::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 ANKQED-VMRAYLQQLRQETGLRLCEKVFDPQNDKPSKWWTCFVKRQFMNKSLSGPGQ 130 140 150 160 170 178 residues in 1 query sequences 60827320 residues in 85289 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Sat Nov 5 17:59:58 2016 done: Sat Nov 5 17:59:59 2016 Total Scan time: 5.620 Total Display time: -0.040 Function used was FASTA [36.3.4 Apr, 2011]