Result of FASTA (omim) for pF1KB0407
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB0407, 465 aa
  1>>>pF1KB0407 465 - 465 aa - 465 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.3893+/-0.000321; mu= 19.1189+/- 0.020
 mean_var=102.0434+/-20.737, 0's: 0 Z-trim(118.4): 126  B-trim: 41 in 1/53
 Lambda= 0.126964
 statistics sampled from 31230 (31363) to 31230 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.725), E-opt: 0.2 (0.368), width:  16
 Scan time:  9.440

The best scores are:                                      opt bits E(85289)
NP_004553 (OMIM: 167000,211980,600116,602544,60757 ( 465) 3379 629.4 6.4e-180
XP_016866397 (OMIM: 167000,211980,600116,602544,60 ( 503) 3368 627.4 2.7e-179
XP_011534165 (OMIM: 167000,211980,600116,602544,60 ( 464) 3362 626.3 5.5e-179
XP_016866398 (OMIM: 167000,211980,600116,602544,60 ( 385) 2825 527.8  2e-149
NP_054642 (OMIM: 167000,211980,600116,602544,60757 ( 437) 1945 366.7 7.2e-101
NP_054643 (OMIM: 167000,211980,600116,602544,60757 ( 316) 1940 365.6 1.1e-100
XP_011515258 (OMIM: 607119) PREDICTED: E3 ubiquiti ( 784)  249 56.3 3.6e-07
XP_016868793 (OMIM: 607119) PREDICTED: E3 ubiquiti ( 784)  249 56.3 3.6e-07
XP_016868792 (OMIM: 607119) PREDICTED: E3 ubiquiti ( 838)  249 56.3 3.7e-07
XP_005250910 (OMIM: 607119) PREDICTED: E3 ubiquiti ( 838)  249 56.3 3.7e-07
XP_016868791 (OMIM: 607119) PREDICTED: E3 ubiquiti ( 838)  249 56.3 3.7e-07
NP_904355 (OMIM: 607119) E3 ubiquitin-protein liga ( 838)  249 56.3 3.7e-07
NP_056250 (OMIM: 607119) E3 ubiquitin-protein liga ( 838)  249 56.3 3.7e-07
NP_001267468 (OMIM: 607119) E3 ubiquitin-protein l ( 838)  249 56.3 3.7e-07
NP_001120833 (OMIM: 610872) E3 ubiquitin-protein l ( 587)  224 51.6   7e-06
NP_001287755 (OMIM: 610872) E3 ubiquitin-protein l ( 731)  224 51.7 8.1e-06
XP_006710421 (OMIM: 610872) PREDICTED: E3 ubiquiti ( 588)  221 51.0   1e-05
XP_006710420 (OMIM: 610872) PREDICTED: E3 ubiquiti ( 688)  221 51.1 1.1e-05
XP_011512731 (OMIM: 607489) PREDICTED: cullin-9 is (1834)  226 52.5 1.2e-05
NP_699172 (OMIM: 610872) E3 ubiquitin-protein liga ( 732)  221 51.1 1.2e-05
XP_006710419 (OMIM: 610872) PREDICTED: E3 ubiquiti ( 732)  221 51.1 1.2e-05
XP_016866079 (OMIM: 607489) PREDICTED: cullin-9 is (1909)  226 52.5 1.2e-05
XP_011512729 (OMIM: 607489) PREDICTED: cullin-9 is (2095)  226 52.5 1.3e-05
XP_011512728 (OMIM: 607489) PREDICTED: cullin-9 is (2339)  226 52.6 1.4e-05
XP_011512727 (OMIM: 607489) PREDICTED: cullin-9 is (2456)  226 52.6 1.4e-05
NP_055904 (OMIM: 607489) cullin-9 [Homo sapiens]   (2517)  226 52.6 1.5e-05
XP_011512726 (OMIM: 607489) PREDICTED: cullin-9 is (2539)  226 52.6 1.5e-05
XP_011512725 (OMIM: 607489) PREDICTED: cullin-9 is (2566)  226 52.6 1.5e-05
XP_011512724 (OMIM: 607489) PREDICTED: cullin-9 is (2566)  226 52.6 1.5e-05
XP_016866078 (OMIM: 607489) PREDICTED: cullin-9 is (2566)  226 52.6 1.5e-05
XP_011519741 (OMIM: 605624) PREDICTED: E3 ubiquiti ( 465)  210 48.9 3.5e-05
XP_011519740 (OMIM: 605624) PREDICTED: E3 ubiquiti ( 498)  210 48.9 3.7e-05
NP_005735 (OMIM: 605624) E3 ubiquitin-protein liga ( 557)  210 49.0   4e-05
XP_005268596 (OMIM: 605675) PREDICTED: E3 ubiquiti ( 348)  205 47.9 5.4e-05
XP_005268597 (OMIM: 605675) PREDICTED: E3 ubiquiti ( 348)  205 47.9 5.4e-05
XP_016865560 (OMIM: 605675) PREDICTED: E3 ubiquiti ( 348)  205 47.9 5.4e-05
XP_016865561 (OMIM: 605675) PREDICTED: E3 ubiquiti ( 348)  205 47.9 5.4e-05
NP_899645 (OMIM: 605675) E3 ubiquitin-protein liga ( 348)  205 47.9 5.4e-05
XP_005268598 (OMIM: 605675) PREDICTED: E3 ubiquiti ( 348)  205 47.9 5.4e-05
NP_001304263 (OMIM: 605615) E3 ubiquitin-protein l ( 351)  204 47.7 6.2e-05
XP_005268594 (OMIM: 605675) PREDICTED: E3 ubiquiti ( 474)  205 48.0 6.7e-05
NP_899646 (OMIM: 605675) E3 ubiquitin-protein liga ( 474)  205 48.0 6.7e-05
XP_011536016 (OMIM: 605675) PREDICTED: E3 ubiquiti ( 474)  205 48.0 6.7e-05
XP_016865559 (OMIM: 605675) PREDICTED: E3 ubiquiti ( 474)  205 48.0 6.7e-05
NP_001188294 (OMIM: 605675) E3 ubiquitin-protein l ( 474)  205 48.0 6.7e-05
NP_899648 (OMIM: 605675) E3 ubiquitin-protein liga ( 474)  205 48.0 6.7e-05
NP_004281 (OMIM: 605675) E3 ubiquitin-protein liga ( 474)  205 48.0 6.7e-05
NP_899647 (OMIM: 605675) E3 ubiquitin-protein liga ( 474)  205 48.0 6.7e-05
XP_005268593 (OMIM: 605675) PREDICTED: E3 ubiquiti ( 474)  205 48.0 6.7e-05
XP_016861029 (OMIM: 605615) PREDICTED: E3 ubiquiti ( 409)  204 47.7 6.9e-05


>>NP_004553 (OMIM: 167000,211980,600116,602544,607572) E  (465 aa)
 initn: 3379 init1: 3379 opt: 3379  Z-score: 3351.1  bits: 629.4 E(85289): 6.4e-180
Smith-Waterman score: 3379; 100.0% identity (100.0% similar) in 465 aa overlap (1-465:1-465)

               10        20        30        40        50        60
pF1KB0 MIVFVRFNSSHGFPVEVDSDTSIFQLKEVVAKRQGVPADQLRVIFAGKELRNDWTVQNCD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_004 MIVFVRFNSSHGFPVEVDSDTSIFQLKEVVAKRQGVPADQLRVIFAGKELRNDWTVQNCD
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB0 LDQQSIVHIVQRPWRKGQEMNATGGDDPRNAAGGCEREPQSLTRVDLSSSVLPGDSVGLA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_004 LDQQSIVHIVQRPWRKGQEMNATGGDDPRNAAGGCEREPQSLTRVDLSSSVLPGDSVGLA
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB0 VILHTDSRKDSPPAGSPAGRSIYNSFYVYCKGPCQRVQPGKLRVQCSTCRQATLTLTQGP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_004 VILHTDSRKDSPPAGSPAGRSIYNSFYVYCKGPCQRVQPGKLRVQCSTCRQATLTLTQGP
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB0 SCWDDVLIPNRMSGECQSPHCPGTSAEFFFKCGAHPTSDKETSVALHLIATNSRNITCIT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_004 SCWDDVLIPNRMSGECQSPHCPGTSAEFFFKCGAHPTSDKETSVALHLIATNSRNITCIT
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB0 CTDVRSPVLVFQCNSRHVICLDCFHLYCVTRLNDRQFVHDPQLGYSLPCVAGCPNSLIKE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_004 CTDVRSPVLVFQCNSRHVICLDCFHLYCVTRLNDRQFVHDPQLGYSLPCVAGCPNSLIKE
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KB0 LHHFRILGEEQYNRYQQYGAEECVLQMGGVLCPRPGCGAGLLPEPDQRKVTCEGGNGLGC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_004 LHHFRILGEEQYNRYQQYGAEECVLQMGGVLCPRPGCGAGLLPEPDQRKVTCEGGNGLGC
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KB0 GFAFCRECKEAYHEGECSAVFEASGTTTQAYRVDERAAEQARWEAASKETIKKTTKPCPR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_004 GFAFCRECKEAYHEGECSAVFEASGTTTQAYRVDERAAEQARWEAASKETIKKTTKPCPR
              370       380       390       400       410       420

              430       440       450       460     
pF1KB0 CHVPVEKNGGCMHMKCPQPQCRLEWCWNCGCEWNRVCMGDHWFDV
       :::::::::::::::::::::::::::::::::::::::::::::
NP_004 CHVPVEKNGGCMHMKCPQPQCRLEWCWNCGCEWNRVCMGDHWFDV
              430       440       450       460     

>>XP_016866397 (OMIM: 167000,211980,600116,602544,607572  (503 aa)
 initn: 3368 init1: 3368 opt: 3368  Z-score: 3339.8  bits: 627.4 E(85289): 2.7e-179
Smith-Waterman score: 3368; 99.6% identity (99.8% similar) in 465 aa overlap (1-465:39-503)

                                             10        20        30
pF1KB0                               MIVFVRFNSSHGFPVEVDSDTSIFQLKEVV
                                     . ::::::::::::::::::::::::::::
XP_016 NSDNCTYSLKNSEPQPESGRLYTRPEREYPITVFVRFNSSHGFPVEVDSDTSIFQLKEVV
       10        20        30        40        50        60        

               40        50        60        70        80        90
pF1KB0 AKRQGVPADQLRVIFAGKELRNDWTVQNCDLDQQSIVHIVQRPWRKGQEMNATGGDDPRN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 AKRQGVPADQLRVIFAGKELRNDWTVQNCDLDQQSIVHIVQRPWRKGQEMNATGGDDPRN
       70        80        90       100       110       120        

              100       110       120       130       140       150
pF1KB0 AAGGCEREPQSLTRVDLSSSVLPGDSVGLAVILHTDSRKDSPPAGSPAGRSIYNSFYVYC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 AAGGCEREPQSLTRVDLSSSVLPGDSVGLAVILHTDSRKDSPPAGSPAGRSIYNSFYVYC
      130       140       150       160       170       180        

              160       170       180       190       200       210
pF1KB0 KGPCQRVQPGKLRVQCSTCRQATLTLTQGPSCWDDVLIPNRMSGECQSPHCPGTSAEFFF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 KGPCQRVQPGKLRVQCSTCRQATLTLTQGPSCWDDVLIPNRMSGECQSPHCPGTSAEFFF
      190       200       210       220       230       240        

              220       230       240       250       260       270
pF1KB0 KCGAHPTSDKETSVALHLIATNSRNITCITCTDVRSPVLVFQCNSRHVICLDCFHLYCVT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 KCGAHPTSDKETSVALHLIATNSRNITCITCTDVRSPVLVFQCNSRHVICLDCFHLYCVT
      250       260       270       280       290       300        

              280       290       300       310       320       330
pF1KB0 RLNDRQFVHDPQLGYSLPCVAGCPNSLIKELHHFRILGEEQYNRYQQYGAEECVLQMGGV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 RLNDRQFVHDPQLGYSLPCVAGCPNSLIKELHHFRILGEEQYNRYQQYGAEECVLQMGGV
      310       320       330       340       350       360        

              340       350       360       370       380       390
pF1KB0 LCPRPGCGAGLLPEPDQRKVTCEGGNGLGCGFAFCRECKEAYHEGECSAVFEASGTTTQA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 LCPRPGCGAGLLPEPDQRKVTCEGGNGLGCGFAFCRECKEAYHEGECSAVFEASGTTTQA
      370       380       390       400       410       420        

              400       410       420       430       440       450
pF1KB0 YRVDERAAEQARWEAASKETIKKTTKPCPRCHVPVEKNGGCMHMKCPQPQCRLEWCWNCG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 YRVDERAAEQARWEAASKETIKKTTKPCPRCHVPVEKNGGCMHMKCPQPQCRLEWCWNCG
      430       440       450       460       470       480        

              460     
pF1KB0 CEWNRVCMGDHWFDV
       :::::::::::::::
XP_016 CEWNRVCMGDHWFDV
      490       500   

>>XP_011534165 (OMIM: 167000,211980,600116,602544,607572  (464 aa)
 initn: 2454 init1: 2454 opt: 3362  Z-score: 3334.3  bits: 626.3 E(85289): 5.5e-179
Smith-Waterman score: 3362; 99.8% identity (99.8% similar) in 465 aa overlap (1-465:1-464)

               10        20        30        40        50        60
pF1KB0 MIVFVRFNSSHGFPVEVDSDTSIFQLKEVVAKRQGVPADQLRVIFAGKELRNDWTVQNCD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 MIVFVRFNSSHGFPVEVDSDTSIFQLKEVVAKRQGVPADQLRVIFAGKELRNDWTVQNCD
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB0 LDQQSIVHIVQRPWRKGQEMNATGGDDPRNAAGGCEREPQSLTRVDLSSSVLPGDSVGLA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 LDQQSIVHIVQRPWRKGQEMNATGGDDPRNAAGGCEREPQSLTRVDLSSSVLPGDSVGLA
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB0 VILHTDSRKDSPPAGSPAGRSIYNSFYVYCKGPCQRVQPGKLRVQCSTCRQATLTLTQGP
       ::::::::::::::::: ::::::::::::::::::::::::::::::::::::::::::
XP_011 VILHTDSRKDSPPAGSP-GRSIYNSFYVYCKGPCQRVQPGKLRVQCSTCRQATLTLTQGP
              130        140       150       160       170         

              190       200       210       220       230       240
pF1KB0 SCWDDVLIPNRMSGECQSPHCPGTSAEFFFKCGAHPTSDKETSVALHLIATNSRNITCIT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 SCWDDVLIPNRMSGECQSPHCPGTSAEFFFKCGAHPTSDKETSVALHLIATNSRNITCIT
     180       190       200       210       220       230         

              250       260       270       280       290       300
pF1KB0 CTDVRSPVLVFQCNSRHVICLDCFHLYCVTRLNDRQFVHDPQLGYSLPCVAGCPNSLIKE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 CTDVRSPVLVFQCNSRHVICLDCFHLYCVTRLNDRQFVHDPQLGYSLPCVAGCPNSLIKE
     240       250       260       270       280       290         

              310       320       330       340       350       360
pF1KB0 LHHFRILGEEQYNRYQQYGAEECVLQMGGVLCPRPGCGAGLLPEPDQRKVTCEGGNGLGC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 LHHFRILGEEQYNRYQQYGAEECVLQMGGVLCPRPGCGAGLLPEPDQRKVTCEGGNGLGC
     300       310       320       330       340       350         

              370       380       390       400       410       420
pF1KB0 GFAFCRECKEAYHEGECSAVFEASGTTTQAYRVDERAAEQARWEAASKETIKKTTKPCPR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 GFAFCRECKEAYHEGECSAVFEASGTTTQAYRVDERAAEQARWEAASKETIKKTTKPCPR
     360       370       380       390       400       410         

              430       440       450       460     
pF1KB0 CHVPVEKNGGCMHMKCPQPQCRLEWCWNCGCEWNRVCMGDHWFDV
       :::::::::::::::::::::::::::::::::::::::::::::
XP_011 CHVPVEKNGGCMHMKCPQPQCRLEWCWNCGCEWNRVCMGDHWFDV
     420       430       440       450       460    

>>XP_016866398 (OMIM: 167000,211980,600116,602544,607572  (385 aa)
 initn: 2454 init1: 2454 opt: 2825  Z-score: 2803.7  bits: 527.8 E(85289): 2e-149
Smith-Waterman score: 2825; 99.7% identity (99.7% similar) in 386 aa overlap (80-465:1-385)

      50        60        70        80        90       100         
pF1KB0 LRNDWTVQNCDLDQQSIVHIVQRPWRKGQEMNATGGDDPRNAAGGCEREPQSLTRVDLSS
                                     ::::::::::::::::::::::::::::::
XP_016                               MNATGGDDPRNAAGGCEREPQSLTRVDLSS
                                             10        20        30

     110       120       130       140       150       160         
pF1KB0 SVLPGDSVGLAVILHTDSRKDSPPAGSPAGRSIYNSFYVYCKGPCQRVQPGKLRVQCSTC
       :::::::::::::::::::::::::::: :::::::::::::::::::::::::::::::
XP_016 SVLPGDSVGLAVILHTDSRKDSPPAGSP-GRSIYNSFYVYCKGPCQRVQPGKLRVQCSTC
               40        50         60        70        80         

     170       180       190       200       210       220         
pF1KB0 RQATLTLTQGPSCWDDVLIPNRMSGECQSPHCPGTSAEFFFKCGAHPTSDKETSVALHLI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 RQATLTLTQGPSCWDDVLIPNRMSGECQSPHCPGTSAEFFFKCGAHPTSDKETSVALHLI
      90       100       110       120       130       140         

     230       240       250       260       270       280         
pF1KB0 ATNSRNITCITCTDVRSPVLVFQCNSRHVICLDCFHLYCVTRLNDRQFVHDPQLGYSLPC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 ATNSRNITCITCTDVRSPVLVFQCNSRHVICLDCFHLYCVTRLNDRQFVHDPQLGYSLPC
     150       160       170       180       190       200         

     290       300       310       320       330       340         
pF1KB0 VAGCPNSLIKELHHFRILGEEQYNRYQQYGAEECVLQMGGVLCPRPGCGAGLLPEPDQRK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 VAGCPNSLIKELHHFRILGEEQYNRYQQYGAEECVLQMGGVLCPRPGCGAGLLPEPDQRK
     210       220       230       240       250       260         

     350       360       370       380       390       400         
pF1KB0 VTCEGGNGLGCGFAFCRECKEAYHEGECSAVFEASGTTTQAYRVDERAAEQARWEAASKE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 VTCEGGNGLGCGFAFCRECKEAYHEGECSAVFEASGTTTQAYRVDERAAEQARWEAASKE
     270       280       290       300       310       320         

     410       420       430       440       450       460     
pF1KB0 TIKKTTKPCPRCHVPVEKNGGCMHMKCPQPQCRLEWCWNCGCEWNRVCMGDHWFDV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 TIKKTTKPCPRCHVPVEKNGGCMHMKCPQPQCRLEWCWNCGCEWNRVCMGDHWFDV
     330       340       350       360       370       380     

>>NP_054642 (OMIM: 167000,211980,600116,602544,607572) E  (437 aa)
 initn: 1939 init1: 1939 opt: 1945  Z-score: 1931.9  bits: 366.7 E(85289): 7.2e-101
Smith-Waterman score: 3090; 94.0% identity (94.0% similar) in 465 aa overlap (1-465:1-437)

               10        20        30        40        50        60
pF1KB0 MIVFVRFNSSHGFPVEVDSDTSIFQLKEVVAKRQGVPADQLRVIFAGKELRNDWTVQNCD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_054 MIVFVRFNSSHGFPVEVDSDTSIFQLKEVVAKRQGVPADQLRVIFAGKELRNDWTVQNCD
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB0 LDQQSIVHIVQRPWRKGQEMNATGGDDPRNAAGGCEREPQSLTRVDLSSSVLPGDSVGLA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_054 LDQQSIVHIVQRPWRKGQEMNATGGDDPRNAAGGCEREPQSLTRVDLSSSVLPGDSVGLA
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB0 VILHTDSRKDSPPAGSPAGRSIYNSFYVYCKGPCQRVQPGKLRVQCSTCRQATLTLTQGP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::  
NP_054 VILHTDSRKDSPPAGSPAGRSIYNSFYVYCKGPCQRVQPGKLRVQCSTCRQATLTLTQ--
              130       140       150       160       170          

              190       200       210       220       230       240
pF1KB0 SCWDDVLIPNRMSGECQSPHCPGTSAEFFFKCGAHPTSDKETSVALHLIATNSRNITCIT
                                 ::::::::::::::::::::::::::::::::::
NP_054 --------------------------EFFFKCGAHPTSDKETSVALHLIATNSRNITCIT
                                180       190       200       210  

              250       260       270       280       290       300
pF1KB0 CTDVRSPVLVFQCNSRHVICLDCFHLYCVTRLNDRQFVHDPQLGYSLPCVAGCPNSLIKE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_054 CTDVRSPVLVFQCNSRHVICLDCFHLYCVTRLNDRQFVHDPQLGYSLPCVAGCPNSLIKE
            220       230       240       250       260       270  

              310       320       330       340       350       360
pF1KB0 LHHFRILGEEQYNRYQQYGAEECVLQMGGVLCPRPGCGAGLLPEPDQRKVTCEGGNGLGC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_054 LHHFRILGEEQYNRYQQYGAEECVLQMGGVLCPRPGCGAGLLPEPDQRKVTCEGGNGLGC
            280       290       300       310       320       330  

              370       380       390       400       410       420
pF1KB0 GFAFCRECKEAYHEGECSAVFEASGTTTQAYRVDERAAEQARWEAASKETIKKTTKPCPR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_054 GFAFCRECKEAYHEGECSAVFEASGTTTQAYRVDERAAEQARWEAASKETIKKTTKPCPR
            340       350       360       370       380       390  

              430       440       450       460     
pF1KB0 CHVPVEKNGGCMHMKCPQPQCRLEWCWNCGCEWNRVCMGDHWFDV
       :::::::::::::::::::::::::::::::::::::::::::::
NP_054 CHVPVEKNGGCMHMKCPQPQCRLEWCWNCGCEWNRVCMGDHWFDV
            400       410       420       430       

>>NP_054643 (OMIM: 167000,211980,600116,602544,607572) E  (316 aa)
 initn: 1940 init1: 1940 opt: 1940  Z-score: 1928.6  bits: 365.6 E(85289): 1.1e-100
Smith-Waterman score: 2004; 68.0% identity (68.0% similar) in 465 aa overlap (1-465:1-316)

               10        20        30        40        50        60
pF1KB0 MIVFVRFNSSHGFPVEVDSDTSIFQLKEVVAKRQGVPADQLRVIFAGKELRNDWTVQNCD
       :::::::::::::::::::::::::::::::::::::::::::::::::::::::::   
NP_054 MIVFVRFNSSHGFPVEVDSDTSIFQLKEVVAKRQGVPADQLRVIFAGKELRNDWTVQ---
               10        20        30        40        50          

               70        80        90       100       110       120
pF1KB0 LDQQSIVHIVQRPWRKGQEMNATGGDDPRNAAGGCEREPQSLTRVDLSSSVLPGDSVGLA
                                                                   
NP_054 ------------------------------------------------------------
                                                                   

              130       140       150       160       170       180
pF1KB0 VILHTDSRKDSPPAGSPAGRSIYNSFYVYCKGPCQRVQPGKLRVQCSTCRQATLTLTQGP
                                                                   
NP_054 ------------------------------------------------------------
                                                                   

              190       200       210       220       230       240
pF1KB0 SCWDDVLIPNRMSGECQSPHCPGTSAEFFFKCGAHPTSDKETSVALHLIATNSRNITCIT
                                 ::::::::::::::::::::::::::::::::::
NP_054 --------------------------EFFFKCGAHPTSDKETSVALHLIATNSRNITCIT
                                  60        70        80        90 

              250       260       270       280       290       300
pF1KB0 CTDVRSPVLVFQCNSRHVICLDCFHLYCVTRLNDRQFVHDPQLGYSLPCVAGCPNSLIKE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_054 CTDVRSPVLVFQCNSRHVICLDCFHLYCVTRLNDRQFVHDPQLGYSLPCVAGCPNSLIKE
             100       110       120       130       140       150 

              310       320       330       340       350       360
pF1KB0 LHHFRILGEEQYNRYQQYGAEECVLQMGGVLCPRPGCGAGLLPEPDQRKVTCEGGNGLGC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_054 LHHFRILGEEQYNRYQQYGAEECVLQMGGVLCPRPGCGAGLLPEPDQRKVTCEGGNGLGC
             160       170       180       190       200       210 

              370       380       390       400       410       420
pF1KB0 GFAFCRECKEAYHEGECSAVFEASGTTTQAYRVDERAAEQARWEAASKETIKKTTKPCPR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_054 GFAFCRECKEAYHEGECSAVFEASGTTTQAYRVDERAAEQARWEAASKETIKKTTKPCPR
             220       230       240       250       260       270 

              430       440       450       460     
pF1KB0 CHVPVEKNGGCMHMKCPQPQCRLEWCWNCGCEWNRVCMGDHWFDV
       :::::::::::::::::::::::::::::::::::::::::::::
NP_054 CHVPVEKNGGCMHMKCPQPQCRLEWCWNCGCEWNRVCMGDHWFDV
             280       290       300       310      

>>XP_011515258 (OMIM: 607119) PREDICTED: E3 ubiquitin-pr  (784 aa)
 initn: 192 init1:  89 opt: 249  Z-score: 249.8  bits: 56.3 E(85289): 3.6e-07
Smith-Waterman score: 249; 26.4% identity (54.6% similar) in 216 aa overlap (244-449:130-332)

           220       230       240        250       260       270  
pF1KB0 AHPTSDKETSVALHLIATNSRNITCITCTDVRSPV-LVFQCNSRHVICLDCFHLYCVTRL
                                     .. :. :. . ..:    . : :  ::  :
XP_011 EMCTDKNSIFSTNTSSDNGLTSISKQIGDFIECPLCLLRHSKDRFPDIMTCHHRSCVDCL
     100       110       120       130       140       150         

            280       290        300        310        320         
pF1KB0 NDRQFVHDPQLGYSLPCVAGCPNSLIK-ELHHFR-ILGEE-QYNRYQQYGAEE-CVLQMG
         ::...  ... :   .. ::.   . . : .: ::...  ...:...  ..  : .  
XP_011 --RQYLR-IEISESRVNIS-CPECTERFNPHDIRLILSDDVLMEKYEEFMLRRWLVADPD
       160        170        180       190       200       210     

      330       340         350       360       370        380     
pF1KB0 GVLCPRPGCGAGLLPE--PDQRKVTCEGGNGLGCGFAFCRECKEAYHEGE-CSAVFEASG
          :: : :: ...     .  :.:: : .  :::  :: .::. .: .. :.:. .  .
XP_011 CRWCPAPDCGYAVIAFGCASCPKLTC-GRE--GCGTEFCYHCKQIWHPNQTCDAARQERA
         220       230       240          250       260       270  

         390       400       410       420         430       440   
pF1KB0 TTTQAYRVDERAAEQARWEAASKETIKKTTKPCPRCHVPVEK--NGGCMHMKCPQPQCRL
        . .   .   .   ..  .:. . ::    ::::: . . :  .:.: :: :    :  
XP_011 QSLRLRTIRSSSISYSQESGAAADDIK----PCPRCAAYIIKMNDGSCNHMTCA--VCGC
            280       290           300       310       320        

           450       460                                           
pF1KB0 EWCWNCGCEWNRVCMGDHWFDV                                      
       :.:: :                                                      
XP_011 EFCWLCMKEISDLHYLSPSGCTFWGKKPWSRKKKILWQLGTLVGAPVGIALIAGIAIPAM
        330       340       350       360       370       380      

>>XP_016868793 (OMIM: 607119) PREDICTED: E3 ubiquitin-pr  (784 aa)
 initn: 192 init1:  89 opt: 249  Z-score: 249.8  bits: 56.3 E(85289): 3.6e-07
Smith-Waterman score: 249; 26.4% identity (54.6% similar) in 216 aa overlap (244-449:130-332)

           220       230       240        250       260       270  
pF1KB0 AHPTSDKETSVALHLIATNSRNITCITCTDVRSPV-LVFQCNSRHVICLDCFHLYCVTRL
                                     .. :. :. . ..:    . : :  ::  :
XP_016 EMCTDKNSIFSTNTSSDNGLTSISKQIGDFIECPLCLLRHSKDRFPDIMTCHHRSCVDCL
     100       110       120       130       140       150         

            280       290        300        310        320         
pF1KB0 NDRQFVHDPQLGYSLPCVAGCPNSLIK-ELHHFR-ILGEE-QYNRYQQYGAEE-CVLQMG
         ::...  ... :   .. ::.   . . : .: ::...  ...:...  ..  : .  
XP_016 --RQYLR-IEISESRVNIS-CPECTERFNPHDIRLILSDDVLMEKYEEFMLRRWLVADPD
       160        170        180       190       200       210     

      330       340         350       360       370        380     
pF1KB0 GVLCPRPGCGAGLLPE--PDQRKVTCEGGNGLGCGFAFCRECKEAYHEGE-CSAVFEASG
          :: : :: ...     .  :.:: : .  :::  :: .::. .: .. :.:. .  .
XP_016 CRWCPAPDCGYAVIAFGCASCPKLTC-GRE--GCGTEFCYHCKQIWHPNQTCDAARQERA
         220       230       240          250       260       270  

         390       400       410       420         430       440   
pF1KB0 TTTQAYRVDERAAEQARWEAASKETIKKTTKPCPRCHVPVEK--NGGCMHMKCPQPQCRL
        . .   .   .   ..  .:. . ::    ::::: . . :  .:.: :: :    :  
XP_016 QSLRLRTIRSSSISYSQESGAAADDIK----PCPRCAAYIIKMNDGSCNHMTCA--VCGC
            280       290           300       310       320        

           450       460                                           
pF1KB0 EWCWNCGCEWNRVCMGDHWFDV                                      
       :.:: :                                                      
XP_016 EFCWLCMKEISDLHYLSPSGCTFWGKKPWSRKKKILWQLGTLVGAPVGIALIAGIAIPAM
        330       340       350       360       370       380      

>>XP_016868792 (OMIM: 607119) PREDICTED: E3 ubiquitin-pr  (838 aa)
 initn: 192 init1:  89 opt: 249  Z-score: 249.5  bits: 56.3 E(85289): 3.7e-07
Smith-Waterman score: 249; 26.4% identity (54.6% similar) in 216 aa overlap (244-449:130-332)

           220       230       240        250       260       270  
pF1KB0 AHPTSDKETSVALHLIATNSRNITCITCTDVRSPV-LVFQCNSRHVICLDCFHLYCVTRL
                                     .. :. :. . ..:    . : :  ::  :
XP_016 EMCTDKNSIFSTNTSSDNGLTSISKQIGDFIECPLCLLRHSKDRFPDIMTCHHRSCVDCL
     100       110       120       130       140       150         

            280       290        300        310        320         
pF1KB0 NDRQFVHDPQLGYSLPCVAGCPNSLIK-ELHHFR-ILGEE-QYNRYQQYGAEE-CVLQMG
         ::...  ... :   .. ::.   . . : .: ::...  ...:...  ..  : .  
XP_016 --RQYLR-IEISESRVNIS-CPECTERFNPHDIRLILSDDVLMEKYEEFMLRRWLVADPD
       160        170        180       190       200       210     

      330       340         350       360       370        380     
pF1KB0 GVLCPRPGCGAGLLPE--PDQRKVTCEGGNGLGCGFAFCRECKEAYHEGE-CSAVFEASG
          :: : :: ...     .  :.:: : .  :::  :: .::. .: .. :.:. .  .
XP_016 CRWCPAPDCGYAVIAFGCASCPKLTC-GRE--GCGTEFCYHCKQIWHPNQTCDAARQERA
         220       230       240          250       260       270  

         390       400       410       420         430       440   
pF1KB0 TTTQAYRVDERAAEQARWEAASKETIKKTTKPCPRCHVPVEK--NGGCMHMKCPQPQCRL
        . .   .   .   ..  .:. . ::    ::::: . . :  .:.: :: :    :  
XP_016 QSLRLRTIRSSSISYSQESGAAADDIK----PCPRCAAYIIKMNDGSCNHMTCA--VCGC
            280       290           300       310       320        

           450       460                                           
pF1KB0 EWCWNCGCEWNRVCMGDHWFDV                                      
       :.:: :                                                      
XP_016 EFCWLCMKEISDLHYLSPSGCTFWGKKPWSRKKKILWQLGTLVGAPVGIALIAGIAIPAM
        330       340       350       360       370       380      

>>XP_005250910 (OMIM: 607119) PREDICTED: E3 ubiquitin-pr  (838 aa)
 initn: 192 init1:  89 opt: 249  Z-score: 249.5  bits: 56.3 E(85289): 3.7e-07
Smith-Waterman score: 249; 26.4% identity (54.6% similar) in 216 aa overlap (244-449:130-332)

           220       230       240        250       260       270  
pF1KB0 AHPTSDKETSVALHLIATNSRNITCITCTDVRSPV-LVFQCNSRHVICLDCFHLYCVTRL
                                     .. :. :. . ..:    . : :  ::  :
XP_005 EMCTDKNSIFSTNTSSDNGLTSISKQIGDFIECPLCLLRHSKDRFPDIMTCHHRSCVDCL
     100       110       120       130       140       150         

            280       290        300        310        320         
pF1KB0 NDRQFVHDPQLGYSLPCVAGCPNSLIK-ELHHFR-ILGEE-QYNRYQQYGAEE-CVLQMG
         ::...  ... :   .. ::.   . . : .: ::...  ...:...  ..  : .  
XP_005 --RQYLR-IEISESRVNIS-CPECTERFNPHDIRLILSDDVLMEKYEEFMLRRWLVADPD
       160        170        180       190       200       210     

      330       340         350       360       370        380     
pF1KB0 GVLCPRPGCGAGLLPE--PDQRKVTCEGGNGLGCGFAFCRECKEAYHEGE-CSAVFEASG
          :: : :: ...     .  :.:: : .  :::  :: .::. .: .. :.:. .  .
XP_005 CRWCPAPDCGYAVIAFGCASCPKLTC-GRE--GCGTEFCYHCKQIWHPNQTCDAARQERA
         220       230       240          250       260       270  

         390       400       410       420         430       440   
pF1KB0 TTTQAYRVDERAAEQARWEAASKETIKKTTKPCPRCHVPVEK--NGGCMHMKCPQPQCRL
        . .   .   .   ..  .:. . ::    ::::: . . :  .:.: :: :    :  
XP_005 QSLRLRTIRSSSISYSQESGAAADDIK----PCPRCAAYIIKMNDGSCNHMTCA--VCGC
            280       290           300       310       320        

           450       460                                           
pF1KB0 EWCWNCGCEWNRVCMGDHWFDV                                      
       :.:: :                                                      
XP_005 EFCWLCMKEISDLHYLSPSGCTFWGKKPWSRKKKILWQLGTLVGAPVGIALIAGIAIPAM
        330       340       350       360       370       380      




465 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sat Nov  5 17:51:27 2016 done: Sat Nov  5 17:51:28 2016
 Total Scan time:  9.440 Total Display time:  0.060

Function used was FASTA [36.3.4 Apr, 2011]
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