Result of FASTA (ccds) for pF1KB0407
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB0407, 465 aa
  1>>>pF1KB0407 465 - 465 aa - 465 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.8697+/-0.000795; mu= 16.5250+/- 0.048
 mean_var=102.1679+/-20.164, 0's: 0 Z-trim(111.3): 40  B-trim: 8 in 1/49
 Lambda= 0.126887
 statistics sampled from 12258 (12297) to 12258 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.739), E-opt: 0.2 (0.378), width:  16
 Scan time:  3.250

The best scores are:                                      opt bits E(32554)
CCDS5281.1 PARK2 gene_id:5071|Hs108|chr6           ( 465) 3379 628.9 3.4e-180
CCDS5282.1 PARK2 gene_id:5071|Hs108|chr6           ( 437) 1945 366.4 3.4e-101
CCDS5283.1 PARK2 gene_id:5071|Hs108|chr6           ( 316) 1940 365.3 5.1e-101


>>CCDS5281.1 PARK2 gene_id:5071|Hs108|chr6                (465 aa)
 initn: 3379 init1: 3379 opt: 3379  Z-score: 3348.5  bits: 628.9 E(32554): 3.4e-180
Smith-Waterman score: 3379; 100.0% identity (100.0% similar) in 465 aa overlap (1-465:1-465)

               10        20        30        40        50        60
pF1KB0 MIVFVRFNSSHGFPVEVDSDTSIFQLKEVVAKRQGVPADQLRVIFAGKELRNDWTVQNCD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS52 MIVFVRFNSSHGFPVEVDSDTSIFQLKEVVAKRQGVPADQLRVIFAGKELRNDWTVQNCD
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB0 LDQQSIVHIVQRPWRKGQEMNATGGDDPRNAAGGCEREPQSLTRVDLSSSVLPGDSVGLA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS52 LDQQSIVHIVQRPWRKGQEMNATGGDDPRNAAGGCEREPQSLTRVDLSSSVLPGDSVGLA
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB0 VILHTDSRKDSPPAGSPAGRSIYNSFYVYCKGPCQRVQPGKLRVQCSTCRQATLTLTQGP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS52 VILHTDSRKDSPPAGSPAGRSIYNSFYVYCKGPCQRVQPGKLRVQCSTCRQATLTLTQGP
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB0 SCWDDVLIPNRMSGECQSPHCPGTSAEFFFKCGAHPTSDKETSVALHLIATNSRNITCIT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS52 SCWDDVLIPNRMSGECQSPHCPGTSAEFFFKCGAHPTSDKETSVALHLIATNSRNITCIT
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB0 CTDVRSPVLVFQCNSRHVICLDCFHLYCVTRLNDRQFVHDPQLGYSLPCVAGCPNSLIKE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS52 CTDVRSPVLVFQCNSRHVICLDCFHLYCVTRLNDRQFVHDPQLGYSLPCVAGCPNSLIKE
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KB0 LHHFRILGEEQYNRYQQYGAEECVLQMGGVLCPRPGCGAGLLPEPDQRKVTCEGGNGLGC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS52 LHHFRILGEEQYNRYQQYGAEECVLQMGGVLCPRPGCGAGLLPEPDQRKVTCEGGNGLGC
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KB0 GFAFCRECKEAYHEGECSAVFEASGTTTQAYRVDERAAEQARWEAASKETIKKTTKPCPR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS52 GFAFCRECKEAYHEGECSAVFEASGTTTQAYRVDERAAEQARWEAASKETIKKTTKPCPR
              370       380       390       400       410       420

              430       440       450       460     
pF1KB0 CHVPVEKNGGCMHMKCPQPQCRLEWCWNCGCEWNRVCMGDHWFDV
       :::::::::::::::::::::::::::::::::::::::::::::
CCDS52 CHVPVEKNGGCMHMKCPQPQCRLEWCWNCGCEWNRVCMGDHWFDV
              430       440       450       460     

>>CCDS5282.1 PARK2 gene_id:5071|Hs108|chr6                (437 aa)
 initn: 1939 init1: 1939 opt: 1945  Z-score: 1930.2  bits: 366.4 E(32554): 3.4e-101
Smith-Waterman score: 3090; 94.0% identity (94.0% similar) in 465 aa overlap (1-465:1-437)

               10        20        30        40        50        60
pF1KB0 MIVFVRFNSSHGFPVEVDSDTSIFQLKEVVAKRQGVPADQLRVIFAGKELRNDWTVQNCD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS52 MIVFVRFNSSHGFPVEVDSDTSIFQLKEVVAKRQGVPADQLRVIFAGKELRNDWTVQNCD
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB0 LDQQSIVHIVQRPWRKGQEMNATGGDDPRNAAGGCEREPQSLTRVDLSSSVLPGDSVGLA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS52 LDQQSIVHIVQRPWRKGQEMNATGGDDPRNAAGGCEREPQSLTRVDLSSSVLPGDSVGLA
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB0 VILHTDSRKDSPPAGSPAGRSIYNSFYVYCKGPCQRVQPGKLRVQCSTCRQATLTLTQGP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::  
CCDS52 VILHTDSRKDSPPAGSPAGRSIYNSFYVYCKGPCQRVQPGKLRVQCSTCRQATLTLTQ--
              130       140       150       160       170          

              190       200       210       220       230       240
pF1KB0 SCWDDVLIPNRMSGECQSPHCPGTSAEFFFKCGAHPTSDKETSVALHLIATNSRNITCIT
                                 ::::::::::::::::::::::::::::::::::
CCDS52 --------------------------EFFFKCGAHPTSDKETSVALHLIATNSRNITCIT
                                180       190       200       210  

              250       260       270       280       290       300
pF1KB0 CTDVRSPVLVFQCNSRHVICLDCFHLYCVTRLNDRQFVHDPQLGYSLPCVAGCPNSLIKE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS52 CTDVRSPVLVFQCNSRHVICLDCFHLYCVTRLNDRQFVHDPQLGYSLPCVAGCPNSLIKE
            220       230       240       250       260       270  

              310       320       330       340       350       360
pF1KB0 LHHFRILGEEQYNRYQQYGAEECVLQMGGVLCPRPGCGAGLLPEPDQRKVTCEGGNGLGC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS52 LHHFRILGEEQYNRYQQYGAEECVLQMGGVLCPRPGCGAGLLPEPDQRKVTCEGGNGLGC
            280       290       300       310       320       330  

              370       380       390       400       410       420
pF1KB0 GFAFCRECKEAYHEGECSAVFEASGTTTQAYRVDERAAEQARWEAASKETIKKTTKPCPR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS52 GFAFCRECKEAYHEGECSAVFEASGTTTQAYRVDERAAEQARWEAASKETIKKTTKPCPR
            340       350       360       370       380       390  

              430       440       450       460     
pF1KB0 CHVPVEKNGGCMHMKCPQPQCRLEWCWNCGCEWNRVCMGDHWFDV
       :::::::::::::::::::::::::::::::::::::::::::::
CCDS52 CHVPVEKNGGCMHMKCPQPQCRLEWCWNCGCEWNRVCMGDHWFDV
            400       410       420       430       

>>CCDS5283.1 PARK2 gene_id:5071|Hs108|chr6                (316 aa)
 initn: 1940 init1: 1940 opt: 1940  Z-score: 1927.1  bits: 365.3 E(32554): 5.1e-101
Smith-Waterman score: 2004; 68.0% identity (68.0% similar) in 465 aa overlap (1-465:1-316)

               10        20        30        40        50        60
pF1KB0 MIVFVRFNSSHGFPVEVDSDTSIFQLKEVVAKRQGVPADQLRVIFAGKELRNDWTVQNCD
       :::::::::::::::::::::::::::::::::::::::::::::::::::::::::   
CCDS52 MIVFVRFNSSHGFPVEVDSDTSIFQLKEVVAKRQGVPADQLRVIFAGKELRNDWTVQ---
               10        20        30        40        50          

               70        80        90       100       110       120
pF1KB0 LDQQSIVHIVQRPWRKGQEMNATGGDDPRNAAGGCEREPQSLTRVDLSSSVLPGDSVGLA
                                                                   
CCDS52 ------------------------------------------------------------
                                                                   

              130       140       150       160       170       180
pF1KB0 VILHTDSRKDSPPAGSPAGRSIYNSFYVYCKGPCQRVQPGKLRVQCSTCRQATLTLTQGP
                                                                   
CCDS52 ------------------------------------------------------------
                                                                   

              190       200       210       220       230       240
pF1KB0 SCWDDVLIPNRMSGECQSPHCPGTSAEFFFKCGAHPTSDKETSVALHLIATNSRNITCIT
                                 ::::::::::::::::::::::::::::::::::
CCDS52 --------------------------EFFFKCGAHPTSDKETSVALHLIATNSRNITCIT
                                  60        70        80        90 

              250       260       270       280       290       300
pF1KB0 CTDVRSPVLVFQCNSRHVICLDCFHLYCVTRLNDRQFVHDPQLGYSLPCVAGCPNSLIKE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS52 CTDVRSPVLVFQCNSRHVICLDCFHLYCVTRLNDRQFVHDPQLGYSLPCVAGCPNSLIKE
             100       110       120       130       140       150 

              310       320       330       340       350       360
pF1KB0 LHHFRILGEEQYNRYQQYGAEECVLQMGGVLCPRPGCGAGLLPEPDQRKVTCEGGNGLGC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS52 LHHFRILGEEQYNRYQQYGAEECVLQMGGVLCPRPGCGAGLLPEPDQRKVTCEGGNGLGC
             160       170       180       190       200       210 

              370       380       390       400       410       420
pF1KB0 GFAFCRECKEAYHEGECSAVFEASGTTTQAYRVDERAAEQARWEAASKETIKKTTKPCPR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS52 GFAFCRECKEAYHEGECSAVFEASGTTTQAYRVDERAAEQARWEAASKETIKKTTKPCPR
             220       230       240       250       260       270 

              430       440       450       460     
pF1KB0 CHVPVEKNGGCMHMKCPQPQCRLEWCWNCGCEWNRVCMGDHWFDV
       :::::::::::::::::::::::::::::::::::::::::::::
CCDS52 CHVPVEKNGGCMHMKCPQPQCRLEWCWNCGCEWNRVCMGDHWFDV
             280       290       300       310      




465 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sat Nov  5 17:51:26 2016 done: Sat Nov  5 17:51:27 2016
 Total Scan time:  3.250 Total Display time:  0.010

Function used was FASTA [36.3.4 Apr, 2011]
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