(Circular) (Six-base) MAPSORT of: pF1KB0982.seq Check: 4079 from: 1 to: 4454 pF1KB0982 4454 bp With 182 enzymes: SgfI * October 7, 2009 14:15 .. AccI GT'mk_AC Cuts at: 680 1173 1492 680 Size: 493 319 3642 Fragments arranged by size: 3642 493 319 Acc65I G'GTAC_C Cuts at: 1470 1470 Size: 4454 AclI AA'CG_TT Cuts at: 4294 4294 Size: 4454 AcuI CTGAAGnnnnnnnnnnnnnn_nn' Cuts at: 914 1019 1248 2279 2711 3458 3726 914 Size: 105 229 1031 432 747 268 1642 Fragments arranged by size: 1642 1031 747 432 268 229 105 AfeI AGC'GCT Cuts at: 1201 1201 Size: 4454 AflIII A'CryG_T Cuts at: 1806 2910 3887 1806 Size: 1104 977 2373 Fragments arranged by size: 2373 1104 977 AgeI A'CCGG_T Cuts at: 2842 2842 Size: 4454 AleI CACnn'nnGTG Cuts at: 1210 1210 Size: 4454 AlwNI CAG_nnn'CTG Cuts at: 252 1759 3326 252 Size: 1507 1567 1380 Fragments arranged by size: 1567 1507 1380 ApaI G_GGCC'C Cuts at: 574 574 Size: 4454 ApaLI G'TGCA_C Cuts at: 409 3224 409 Size: 2815 1639 ApoI r'AATT_y Cuts at: 1458 3807 4063 1458 Size: 2349 256 1849 Fragments arranged by size: 2349 1849 256 AseI AT'TA_AT Cuts at: 20 20 Size: 4454 AsiSI GCG_AT'CGC Cuts at: 104 104 Size: 4454 AvaI C'yCGr_G Cuts at: 908 1097 1190 1474 908 Size: 189 93 284 3888 Fragments arranged by size: 3888 284 189 93 BamHI G'GATC_C Cuts at: 1415 1479 1415 Size: 64 4390 BanI G'GyrC_C Cuts at: 587 1305 1470 1884 2132 2167 587 Size: 718 165 414 248 35 2874 Fragments arranged by size: 2874 718 414 248 165 35 BanII G_rGCy'C Cuts at: 574 1096 1468 2498 574 Size: 522 372 1030 2530 Fragments arranged by size: 2530 1030 522 372 BbeI G_GCGC'C Cuts at: 591 1888 2136 591 Size: 1297 248 2909 Fragments arranged by size: 2909 1297 248 BbvCI CC'TCA_GC Cuts at: 798 1059 798 Size: 261 4193 BciVI GTATCCnnnnn_n' Cuts at: 2352 3113 4454 2352 Size: 761 1341 2352 Fragments arranged by size: 2352 1341 761 BclI T'GATC_A Cuts at: 1974 1974 Size: 4454 BglI GCCn_nnn'nGGC Cuts at: 145 154 585 826 145 Size: 9 431 241 3773 Fragments arranged by size: 3773 431 241 9 BglII A'GATC_T Cuts at: 1969 4006 1969 Size: 2037 2417 BlpI GC'TnA_GC Cuts at: 1566 1566 Size: 4454 Bme1580I G_kGCm'C Cuts at: 413 574 1310 2079 2172 3228 413 Size: 161 736 769 93 1056 1639 Fragments arranged by size: 1639 1056 769 736 161 93 BmgBI CAC'GTC Cuts at: 384 384 Size: 4454 BmrI ACTGGGnnnn_n' Cuts at: 450 588 875 911 917 1666 1747 2082 4226 Size: 138 287 36 6 749 81 335 2144 Cuts at: 4226 450 Size: 678 Fragments arranged by size: 2144 749 678 335 287 138 81 36 6 BplI GAGnnnnnCTCnnnnnnnn_nnnnn' Cuts at: 486 2821 486 Size: 2335 2119 BpmI CTGGAGnnnnnnnnnnnnnn_nn' Cuts at: 481 618 968 481 Size: 137 350 3967 Fragments arranged by size: 3967 350 137 Bpu10I CC'TnA_GC Cuts at: 798 1059 798 Size: 261 4193 BpuEI CTTGAGnnnnnnnnnnnnnn_nn' Cuts at: 1630 2509 3001 3299 1630 Size: 879 492 298 2785 Fragments arranged by size: 2785 879 492 298 BsaI GGTCTCn'nnnn_ Cuts at: 880 4158 880 Size: 3278 1176 BsaAI yAC'GTr Cuts at: 356 1117 1807 356 Size: 761 690 3003 Fragments arranged by size: 3003 761 690 BsaBI GATnn'nnATC Cuts at: 6 1968 4005 6 Size: 1962 2037 455 Fragments arranged by size: 2037 1962 455 BsaHI Gr'CG_yC Cuts at: 588 1170 1885 2133 2835 4331 588 Size: 582 715 248 702 1496 711 Fragments arranged by size: 1496 715 711 702 582 248 BsaWI w'CCGG_w Cuts at: 1409 1643 2164 2842 3116 3263 3674 1409 Size: 234 521 678 274 147 411 2189 Fragments arranged by size: 2189 678 521 411 274 234 147 BsaXI ACnnnnnCTCCnnnnnnn_nnn' Cuts at: 112 142 604 634 1009 1039 112 Size: 30 462 30 375 30 3527 Fragments arranged by size: 3527 462 375 30 30 30 BseRI GAGGAGnnnnnnnn_nn' Cuts at: 892 1018 1021 1024 1027 1030 892 Size: 126 3 3 3 3 4316 Fragments arranged by size: 4316 126 3 3 3 3 BseYI C'CCAG_C Cuts at: 330 575 1879 2637 3214 3710 330 Size: 245 1304 758 577 496 1074 Fragments arranged by size: 1304 1074 758 577 496 245 BsgI GTGCAGnnnnnnnnnnnnnn_nn' Cuts at: 154 378 154 Size: 224 4230 BsiEI CG_ry'CG Cuts at: 104 1996 2042 3250 104 Size: 1892 46 1208 1308 Fragments arranged by size: 1892 1308 1208 46 BsiHKAI G_wGCw'C Cuts at: 389 413 1130 1244 1468 2246 2436 3228 389 Size: 24 717 114 224 778 190 792 1615 Fragments arranged by size: 1615 792 778 717 224 190 114 24 Bsp1286I G_dGCh'C Cuts at: 389 413 574 1096 1130 1244 1310 1468 2079 Size: 24 161 522 34 114 66 158 611 Cuts at: 2079 2172 2246 2436 2498 3228 389 Size: 93 74 190 62 730 1615 Fragments arranged by size: 1615 730 611 522 190 161 158 114 93 74 66 62 34 24 BspEI T'CCGG_A Cuts at: 1409 3674 1409 Size: 2265 2189 BspHI T'CATG_A Cuts at: 668 3630 668 Size: 2962 1492 BspMI ACCTGCnnnn'nnnn_ Cuts at: 692 1504 1718 2020 2401 692 Size: 812 214 302 381 2745 Fragments arranged by size: 2745 812 381 302 214 BsrBI CCG'CTC Cuts at: 50 230 2746 2800 4284 4449 50 Size: 180 2516 54 1484 165 55 Fragments arranged by size: 2516 1484 180 165 55 54 BsrDI GCAATG_nn' Cuts at: 2366 2366 Size: 4454 BsrFI r'CCGG_y Cuts at: 2452 2633 2842 2452 Size: 181 209 4064 Fragments arranged by size: 4064 209 181 BssHII G'CGCG_C Cuts at: 237 455 237 Size: 218 4236 BssSI C'ACGA_G Cuts at: 2725 3083 2725 Size: 358 4096 BstAPI GCAn_nnn'nTGC Cuts at: 359 497 1831 359 Size: 138 1334 2982 Fragments arranged by size: 2982 1334 138 BstBI TT'CG_AA Cuts at: 2815 2815 Size: 4454 BstXI CCAn_nnnn'nTGG Cuts at: 429 926 429 Size: 497 3957 BstYI r'GATC_y Cuts at: 1 643 1415 1479 1946 1969 2304 2550 3562 Size: 642 772 64 467 23 335 246 1012 Cuts at: 3562 3648 3660 4006 1 Size: 86 12 346 449 Fragments arranged by size: 1012 772 642 467 449 346 335 246 86 64 23 12 BtgI C'CryG_G Cuts at: 107 780 1311 1429 107 Size: 673 531 118 3132 Fragments arranged by size: 3132 673 531 118 BtgZI GCGATGnnnnnnnnnn'nnnn_ Cuts at: 507 2404 2585 2748 507 Size: 1897 181 163 2213 Fragments arranged by size: 2213 1897 181 163 BtsI GCAGTG_nn' Cuts at: 1046 1168 1296 1697 1046 Size: 122 128 401 3803 Fragments arranged by size: 3803 401 128 122 DraI TTT'AAA Cuts at: 1453 1453 Size: 4454 DraIII CAC_nnn'GTG Cuts at: 359 515 359 Size: 156 4298 DrdI GACnn_nn'nnGTC Cuts at: 2160 3018 2160 Size: 858 3596 EaeI y'GGCC_r Cuts at: 146 158 269 290 317 1106 1119 2039 2213 Size: 12 111 21 27 789 13 920 174 Cuts at: 2213 2604 2631 3976 146 Size: 391 27 1345 624 Fragments arranged by size: 1345 920 789 624 391 174 111 27 27 21 13 12 EagI C'GGCC_G Cuts at: 2039 2039 Size: 4454 EarI CTCTTCn'nnn_ Cuts at: 394 995 1016 1324 2477 2687 394 Size: 601 21 308 1153 210 2161 Fragments arranged by size: 2161 1153 601 308 210 21 EciI GGCGGAnnnnnnnnn_nn' Cuts at: 1387 2662 2972 3118 4264 1387 Size: 1275 310 146 1146 1577 Fragments arranged by size: 1577 1275 1146 310 146 EcoICRI GAG'CTC Cuts at: 1466 1466 Size: 4454 Eco57MI CTGrAGnnnnnnnnnnnnnn_nn' Cuts at: 481 618 914 968 1019 1248 2279 2711 3458 Size: 137 296 54 51 229 1031 432 747 Cuts at: 3458 3726 481 Size: 268 1209 Fragments arranged by size: 1209 1031 747 432 296 268 229 137 54 51 EcoNI CCTnn'n_nnAGG Cuts at: 1410 1410 Size: 4454 EcoO109I rG'GnC_Cy Cuts at: 120 570 571 724 742 905 1593 120 Size: 450 1 153 18 163 688 2981 Fragments arranged by size: 2981 688 450 163 153 18 1 EcoRI G'AATT_C Cuts at: 1458 1458 Size: 4454 FalI AAGnnnnnCTTnnnnnnnn_nnnnn' Cuts at: 2473 2473 Size: 4454 FspI TGC'GCA Cuts at: 688 2235 688 Size: 1547 2907 HaeII r_GCGC'y Cuts at: 379 591 1203 1888 2136 3158 4137 379 Size: 212 612 685 248 1022 979 696 Fragments arranged by size: 1022 979 696 685 612 248 212 Hin4I GAynnnnnvTCnnnnnnnn_nnnnn' Cuts at: 112 144 2296 2326 2328 2358 112 Size: 32 2152 30 2 30 2208 Fragments arranged by size: 2208 2152 32 30 30 2 HincII GTy'rAC Cuts at: 221 846 1174 1493 221 Size: 625 328 319 3182 Fragments arranged by size: 3182 625 328 319 KasI G'GCGC_C Cuts at: 587 1884 2132 587 Size: 1297 248 2909 Fragments arranged by size: 2909 1297 248 KpnI G_GTAC'C Cuts at: 1474 1474 Size: 4454 MluI A'CGCG_T Cuts at: 3887 3887 Size: 4454 MmeI TCCrACnnnnnnnnnnnnnnnnnn_nn' Cuts at: 3125 3309 3125 Size: 184 4270 MscI TGG'CCA Cuts at: 292 319 1108 1121 2215 292 Size: 27 789 13 1094 2531 Fragments arranged by size: 2531 1094 789 27 13 MslI CAynn'nnrTG Cuts at: 286 1210 2443 2570 286 Size: 924 1233 127 2170 Fragments arranged by size: 2170 1233 924 127 MspA1I CmG'CkG Cuts at: 145 1077 1185 1565 1879 2239 3252 3497 145 Size: 932 108 380 314 360 1013 245 1102 Fragments arranged by size: 1102 1013 932 380 360 314 245 108 NaeI GCC'GGC Cuts at: 2635 2635 Size: 4454 NarI GG'CG_CC Cuts at: 588 1885 2133 588 Size: 1297 248 2909 Fragments arranged by size: 2909 1297 248 NcoI C'CATG_G Cuts at: 107 780 1311 107 Size: 673 531 3250 Fragments arranged by size: 3250 673 531 NgoMIV G'CCGG_C Cuts at: 2633 2633 Size: 4454 NspI r_CATG'y Cuts at: 1507 2007 2914 1507 Size: 500 907 3047 Fragments arranged by size: 3047 907 500 PasI CC'CwG_GG Cuts at: 728 728 Size: 4454 PciI A'CATG_T Cuts at: 2910 2910 Size: 4454 PmeI GTTT'AAAC Cuts at: 1453 1453 Size: 4454 PmlI CAC'GTG Cuts at: 356 356 Size: 4454 PpiI GAACnnnnnCTCnnnnnnnn_nnnnn' Cuts at: 3593 3625 3593 Size: 32 4422 PpuMI rG'GwC_Cy Cuts at: 120 724 905 120 Size: 604 181 3669 Fragments arranged by size: 3669 604 181 PspOMI G'GGCC_C Cuts at: 570 570 Size: 4454 PstI C_TGCA'G Cuts at: 1082 1501 2186 1082 Size: 419 685 3350 Fragments arranged by size: 3350 685 419 PvuI CG_AT'CG Cuts at: 104 104 Size: 4454 PvuII CAG'CTG Cuts at: 1185 1879 2239 1185 Size: 694 360 3400 Fragments arranged by size: 3400 694 360 RsrII CG'GwC_CG Cuts at: 2649 2649 Size: 4454 SacI G_AGCT'C Cuts at: 1468 1468 Size: 4454 SalI G'TCGA_C Cuts at: 1172 1491 1172 Size: 319 4135 SanDI GG'GwC_CC Cuts at: 905 905 Size: 4454 SapI GCTCTTCn'nnn_ Cuts at: 394 2477 2687 394 Size: 2083 210 2161 Fragments arranged by size: 2161 2083 210 SbfI CC_TGCA'GG Cuts at: 1501 1501 Size: 4454 ScaI AGT'ACT Cuts at: 3971 3971 Size: 4454 SfcI C'TryA_G Cuts at: 33 1078 1151 1269 1497 2182 3175 3366 33 Size: 1045 73 118 228 685 993 191 1121 Fragments arranged by size: 1121 1045 993 685 228 191 118 73 SfiI GGCCn_nnn'nGGCC Cuts at: 145 145 Size: 4454 SfoI GGC'GCC Cuts at: 589 1886 2134 589 Size: 1297 248 2909 Fragments arranged by size: 2909 1297 248 SgfI GCG_AT'CGC Cuts at: 104 104 Size: 4454 SmaI CCC'GGG Cuts at: 910 1099 1192 1476 910 Size: 189 93 284 3888 Fragments arranged by size: 3888 284 189 93 SmlI C'TyrA_G Cuts at: 1609 2524 3016 3278 1609 Size: 915 492 262 2785 Fragments arranged by size: 2785 915 492 262 SpeI A'CTAG_T Cuts at: 67 67 Size: 4454 SphI G_CATG'C Cuts at: 1507 2007 1507 Size: 500 3954 StuI AGG'CCT Cuts at: 616 616 Size: 4454 StyI C'CwwG_G Cuts at: 107 734 780 1311 1588 1942 107 Size: 627 46 531 277 354 2619 Fragments arranged by size: 2619 627 531 354 277 46 TaqII GACCGAnnnnnnnnn_nn' Cuts at: 936 1135 2037 2170 2629 2838 936 Size: 199 902 133 459 209 2552 Fragments arranged by size: 2552 902 459 209 199 133 TatI w'GTAC_w Cuts at: 464 3969 464 Size: 3505 949 TstI CACnnnnnnTCCnnnnnnn_nnnnn' Cuts at: 844 876 1009 1041 3971 4003 844 Size: 32 133 32 2930 32 1295 Fragments arranged by size: 2930 1295 133 32 32 32 Tth111I GACn'n_nGTC Cuts at: 2251 2251 Size: 4454 XbaI T'CTAG_A Cuts at: 1485 1485 Size: 4454 XcmI CCAnnnn_n'nnnnTGG Cuts at: 327 1949 327 Size: 1622 2832 XmaI C'CCGG_G Cuts at: 908 1097 1190 1474 908 Size: 189 93 284 3888 Fragments arranged by size: 3888 284 189 93 XmnI GAAnn'nnTTC Cuts at: 253 1201 253 Size: 948 3506 Enzymes that do cut: AccI Acc65I AclI AcuI AfeI AflIII AgeI AleI AlwNI ApaI ApaLI ApoI AseI AsiSI AvaI BamHI BanI BanII BbeI BbvCI BciVI BclI BglI BglII BlpI Bme1580I BmgBI BmrI BplI BpmI Bpu10I BpuEI BsaI BsaAI BsaBI BsaHI BsaWI BsaXI BseRI BseYI BsgI BsiEI BsiHKAI Bsp1286I BspEI BspHI BspMI BsrBI BsrDI BsrFI BssHII BssSI BstAPI BstBI BstXI BstYI BtgI BtgZI BtsI DraI DraIII DrdI EaeI EagI EarI EciI EcoICRI Eco57MI EcoNI EcoO109I EcoRI FalI FspI HaeII Hin4I HincII KasI KpnI MluI MmeI MscI MslI MspA1I NaeI NarI NcoI NgoMIV NspI PasI PciI PmeI PmlI PpiI PpuMI PspOMI PstI PvuI PvuII RsrII SacI SalI SanDI SapI SbfI ScaI SfcI SfiI SfoI SgfI SmaI SmlI SpeI SphI StuI StyI TaqII TatI TstI Tth111I XbaI XcmI XmaI XmnI Enzymes that do not cut: AarI AatII AflII AhdI AlfI AloI AscI AvrII BaeI BbsI BcgI BfrBI BmtI BsiWI BsmI BsmBI BsrGI BstEII BstZ17I Bsu36I ClaI CspCI EcoRV FseI FspAI HindIII HpaI MfeI NdeI NheI NotI NruI NsiI PacI PflMI PfoI PshAI PsiI PspXI PsrI SacII SexAI SgrAI SnaBI SrfI SspI SwaI XhoI ZraI