Result of FASTA (omim) for pF1KB0905
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB0905, 93 aa
  1>>>pF1KB0905 93 - 93 aa - 93 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 4.8582+/-0.000278; mu= 11.1162+/- 0.017
 mean_var=57.0761+/-11.738, 0's: 0 Z-trim(118.4): 60  B-trim: 597 in 1/54
 Lambda= 0.169765
 statistics sampled from 31347 (31413) to 31347 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.767), E-opt: 0.2 (0.368), width:  16
 Scan time:  3.330

The best scores are:                                      opt bits E(85289)
NP_116739 (OMIM: 601392) C-C motif chemokine 14 is (  93)  639 163.7 3.8e-41
NP_116738 (OMIM: 601392) C-C motif chemokine 14 is ( 109)  483 125.6 1.4e-29
NP_001001437 (OMIM: 609468) C-C motif chemokine 3- (  93)  323 86.3 7.5e-18
NP_066286 (OMIM: 601395,609423) C-C motif chemokin (  93)  323 86.3 7.5e-18
NP_002974 (OMIM: 182283,609423) C-C motif chemokin (  92)  318 85.1 1.7e-17
NP_996890 (OMIM: 603782) C-C motif chemokine 4-lik (  92)  311 83.4 5.7e-17
NP_002975 (OMIM: 182284) C-C motif chemokine 4 pre (  92)  307 82.4 1.1e-16
NP_002979 (OMIM: 603757) C-C motif chemokine 18 pr (  89)  271 73.6 4.9e-14
NP_001278397 (OMIM: 610757) C-C motif chemokine 4- (  87)  268 72.9 8.1e-14
NP_002976 (OMIM: 187011) C-C motif chemokine 5 iso (  91)  248 68.0 2.5e-12
NP_004581 (OMIM: 601394) C-C motif chemokine 16 pr ( 120)  246 67.6 4.4e-12
XP_005258077 (OMIM: 601394) PREDICTED: C-C motif c ( 120)  246 67.6 4.4e-12
NP_005399 (OMIM: 601391) C-C motif chemokine 13 pr (  98)  236 65.1   2e-11
NP_005055 (OMIM: 602494) C-C motif chemokine 23 is ( 137)  236 65.1 2.7e-11
NP_665905 (OMIM: 602494) C-C motif chemokine 23 is ( 120)  230 63.6 6.7e-11
NP_005614 (OMIM: 602283) C-C motif chemokine 8 pre (  99)  220 61.1 3.1e-10
NP_116741 (OMIM: 601393) C-C motif chemokine 15 pr ( 113)  220 61.2 3.5e-10
XP_016867161 (OMIM: 604697) PREDICTED: C-C motif c (  94)  219 60.9 3.5e-10
NP_006063 (OMIM: 604697) C-C motif chemokine 26 pr (  94)  219 60.9 3.5e-10
XP_016867160 (OMIM: 604697) PREDICTED: C-C motif c ( 148)  219 61.0 5.1e-10
NP_006264 (OMIM: 158106) C-C motif chemokine 7 pre (  99)  214 59.7 8.6e-10
NP_002977 (OMIM: 600807,601156,609423) eotaxin pre (  97)  212 59.2 1.2e-09
NP_001278401 (OMIM: 610757) C-C motif chemokine 4- (  96)  204 57.2 4.6e-09
XP_011521558 (OMIM: 601520) PREDICTED: C-C motif c ( 122)  202 56.8 7.8e-09
XP_016879019 (OMIM: 601520) PREDICTED: C-C motif c ( 123)  202 56.8 7.9e-09
NP_002978 (OMIM: 601520) C-C motif chemokine 17 pr (  94)  200 56.2 8.9e-09
XP_011514762 (OMIM: 602495) PREDICTED: C-C motif c ( 119)  201 56.5 9.1e-09
NP_002982 (OMIM: 602495) C-C motif chemokine 24 pr ( 119)  201 56.5 9.1e-09
XP_011514761 (OMIM: 602495) PREDICTED: C-C motif c ( 119)  201 56.5 9.1e-09
NP_001278400 (OMIM: 610757) C-C motif chemokine 4- ( 103)  192 54.3 3.7e-08
NP_001278404 (OMIM: 610757) C-C motif chemokine 4- ( 103)  191 54.0 4.4e-08
NP_001278398 (OMIM: 610757) C-C motif chemokine 4- (  64)  188 53.2   5e-08
NP_001278399 (OMIM: 610757) C-C motif chemokine 4- (  64)  188 53.2   5e-08
NP_002973 (OMIM: 158105,182940,607948,609423) C-C  (  99)  189 53.5   6e-08
NP_001278402 (OMIM: 610757) C-C motif chemokine 4- (  86)  188 53.3 6.3e-08
XP_016879020 (OMIM: 602957) PREDICTED: C-C motif c (  93)  186 52.8 9.5e-08
NP_002981 (OMIM: 602957) C-C motif chemokine 22 pr (  93)  186 52.8 9.5e-08
NP_002972 (OMIM: 182281) C-C motif chemokine 1 pre (  96)  171 49.1 1.2e-06
NP_001265665 (OMIM: 187011) C-C motif chemokine 5  ( 154)  158 46.1 1.7e-05
NP_003166 (OMIM: 604828) cytokine SCM-1 beta precu ( 114)  155 45.3 2.2e-05
NP_002980 (OMIM: 602737) C-C motif chemokine 21 pr ( 134)  154 45.0 2.9e-05
XP_011516306 (OMIM: 602737) PREDICTED: C-C motif c ( 145)  154 45.1 3.1e-05
XP_011508167 (OMIM: 600250) PREDICTED: lymphotacti ( 114)  152 44.5 3.6e-05
NP_002986 (OMIM: 600250) lymphotactin precursor [H ( 114)  152 44.5 3.6e-05
NP_006265 (OMIM: 602227) C-C motif chemokine 19 pr (  98)  141 41.8 0.00021
NP_001123518 (OMIM: 601960) C-C motif chemokine 20 (  95)  122 37.1   0.005
NP_004582 (OMIM: 601960) C-C motif chemokine 20 is (  96)  122 37.1  0.0051
NP_002987 (OMIM: 601880) fractalkine isoform 1 pre ( 397)  127 38.7   0.007


>>NP_116739 (OMIM: 601392) C-C motif chemokine 14 isofor  (93 aa)
 initn: 639 init1: 639 opt: 639  Z-score: 859.7  bits: 163.7 E(85289): 3.8e-41
Smith-Waterman score: 639; 100.0% identity (100.0% similar) in 93 aa overlap (1-93:1-93)

               10        20        30        40        50        60
pF1KB0 MKISVAAIPFFLLITIALGTKTESSSRGPYHPSECCFTYTTYKIPRQRIMDYYETNSQCS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_116 MKISVAAIPFFLLITIALGTKTESSSRGPYHPSECCFTYTTYKIPRQRIMDYYETNSQCS
               10        20        30        40        50        60

               70        80        90   
pF1KB0 KPGIVFITKRGHSVCTNPSDKWVQDYIKDMKEN
       :::::::::::::::::::::::::::::::::
NP_116 KPGIVFITKRGHSVCTNPSDKWVQDYIKDMKEN
               70        80        90   

>>NP_116738 (OMIM: 601392) C-C motif chemokine 14 isofor  (109 aa)
 initn: 619 init1: 483 opt: 483  Z-score: 652.2  bits: 125.6 E(85289): 1.4e-29
Smith-Waterman score: 591; 84.4% identity (85.3% similar) in 109 aa overlap (1-93:1-109)

               10        20                        30        40    
pF1KB0 MKISVAAIPFFLLITIALGTKTESSSR----------------GPYHPSECCFTYTTYKI
       ::::::::::::::::::::::::::.                :::::::::::::::::
NP_116 MKISVAAIPFFLLITIALGTKTESSSQTGGKPKVVKIQLKLVGGPYHPSECCFTYTTYKI
               10        20        30        40        50        60

           50        60        70        80        90   
pF1KB0 PRQRIMDYYETNSQCSKPGIVFITKRGHSVCTNPSDKWVQDYIKDMKEN
       :::::::::::::::::::::::::::::::::::::::::::::::::
NP_116 PRQRIMDYYETNSQCSKPGIVFITKRGHSVCTNPSDKWVQDYIKDMKEN
               70        80        90       100         

>>NP_001001437 (OMIM: 609468) C-C motif chemokine 3-like  (93 aa)
 initn: 325 init1: 307 opt: 323  Z-score: 441.5  bits: 86.3 E(85289): 7.5e-18
Smith-Waterman score: 323; 47.3% identity (82.4% similar) in 91 aa overlap (1-91:1-90)

               10        20        30        40        50        60
pF1KB0 MKISVAAIPFFLLITIALGTKTESSSRGPYHPSECCFTYTTYKIPRQRIMDYYETNSQCS
       :..:.::.   :: :.:: ... :.  .   :. :::.::. .::.. : ::.::.::::
NP_001 MQVSTAALAV-LLCTMALCNQVLSAPLAADTPTACCFSYTSRQIPQNFIADYFETSSQCS
               10         20        30        40        50         

               70        80        90    
pF1KB0 KPGIVFITKRGHSVCTNPSDKWVQDYIKDMKEN 
       ::...:.::::..::..::..::: :..:..   
NP_001 KPSVIFLTKRGRQVCADPSEEWVQKYVSDLELSA
      60        70        80        90   

>>NP_066286 (OMIM: 601395,609423) C-C motif chemokine 3-  (93 aa)
 initn: 325 init1: 307 opt: 323  Z-score: 441.5  bits: 86.3 E(85289): 7.5e-18
Smith-Waterman score: 323; 47.3% identity (82.4% similar) in 91 aa overlap (1-91:1-90)

               10        20        30        40        50        60
pF1KB0 MKISVAAIPFFLLITIALGTKTESSSRGPYHPSECCFTYTTYKIPRQRIMDYYETNSQCS
       :..:.::.   :: :.:: ... :.  .   :. :::.::. .::.. : ::.::.::::
NP_066 MQVSTAALAV-LLCTMALCNQVLSAPLAADTPTACCFSYTSRQIPQNFIADYFETSSQCS
               10         20        30        40        50         

               70        80        90    
pF1KB0 KPGIVFITKRGHSVCTNPSDKWVQDYIKDMKEN 
       ::...:.::::..::..::..::: :..:..   
NP_066 KPSVIFLTKRGRQVCADPSEEWVQKYVSDLELSA
      60        70        80        90   

>>NP_002974 (OMIM: 182283,609423) C-C motif chemokine 3   (92 aa)
 initn: 299 init1: 279 opt: 318  Z-score: 434.9  bits: 85.1 E(85289): 1.7e-17
Smith-Waterman score: 318; 48.4% identity (82.4% similar) in 91 aa overlap (1-91:1-89)

               10        20        30        40        50        60
pF1KB0 MKISVAAIPFFLLITIALGTKTESSSRGPYHPSECCFTYTTYKIPRQRIMDYYETNSQCS
       :..:.::.   :: :.:: ..  :.: .   :. :::.::. .::.. : ::.::.::::
NP_002 MQVSTAALAV-LLCTMALCNQF-SASLAADTPTACCFSYTSRQIPQNFIADYFETSSQCS
               10         20         30        40        50        

               70        80        90    
pF1KB0 KPGIVFITKRGHSVCTNPSDKWVQDYIKDMKEN 
       :::..:.:::...::..::..::: :..:..   
NP_002 KPGVIFLTKRSRQVCADPSEEWVQKYVSDLELSA
       60        70        80        90  

>>NP_996890 (OMIM: 603782) C-C motif chemokine 4-like pr  (92 aa)
 initn: 301 init1: 276 opt: 311  Z-score: 425.7  bits: 83.4 E(85289): 5.7e-17
Smith-Waterman score: 311; 44.1% identity (80.6% similar) in 93 aa overlap (1-93:1-92)

               10        20        30        40        50        60
pF1KB0 MKISVAAIPFFLLITIALGTKTESSSRGPYHPSECCFTYTTYKIPRQRIMDYYETNSQCS
       ::. :... ...:.. :. . . :.  :   :. :::.::. :.::. ..:::::.: ::
NP_996 MKLCVTVLSLLVLVA-AFCSLALSAPMGSDPPTACCFSYTARKLPRNFVVDYYETSSLCS
               10         20        30        40        50         

               70        80        90   
pF1KB0 KPGIVFITKRGHSVCTNPSDKWVQDYIKDMKEN
       .:..:: ::::..::..::..:::.:. :.. :
NP_996 QPAVVFQTKRGKQVCADPSESWVQEYVYDLELN
      60        70        80        90  

>>NP_002975 (OMIM: 182284) C-C motif chemokine 4 precurs  (92 aa)
 initn: 295 init1: 268 opt: 307  Z-score: 420.4  bits: 82.4 E(85289): 1.1e-16
Smith-Waterman score: 307; 43.0% identity (80.6% similar) in 93 aa overlap (1-93:1-92)

               10        20        30        40        50        60
pF1KB0 MKISVAAIPFFLLITIALGTKTESSSRGPYHPSECCFTYTTYKIPRQRIMDYYETNSQCS
       ::. :... ...:.. :. . . :.  :   :. :::.::. :.::. ..:::::.: ::
NP_002 MKLCVTVLSLLMLVA-AFCSPALSAPMGSDPPTACCFSYTARKLPRNFVVDYYETSSLCS
               10         20        30        40        50         

               70        80        90   
pF1KB0 KPGIVFITKRGHSVCTNPSDKWVQDYIKDMKEN
       .:..:: :::...::..::..:::.:. :.. :
NP_002 QPAVVFQTKRSKQVCADPSESWVQEYVYDLELN
      60        70        80        90  

>>NP_002979 (OMIM: 603757) C-C motif chemokine 18 precur  (89 aa)
 initn: 290 init1: 267 opt: 271  Z-score: 372.9  bits: 73.6 E(85289): 4.9e-14
Smith-Waterman score: 271; 41.9% identity (76.3% similar) in 93 aa overlap (1-93:1-88)

               10        20        30        40        50        60
pF1KB0 MKISVAAIPFFLLITIALGTKTESSSRGPYHPSECCFTYTTYKIPRQRIMDYYETNSQCS
       :: ..::  . :. :.:: . .. ..    .   ::..::...::.. :.:: ::. :: 
NP_002 MK-GLAAALLVLVCTMALCSCAQVGT----NKELCCLVYTSWQIPQKFIVDYSETSPQCP
                10        20            30        40        50     

               70        80        90    
pF1KB0 KPGIVFITKRGHSVCTNPSDKWVQDYIKDMKEN 
       :::....::::...:..:. :::: ::.:.: : 
NP_002 KPGVILLTKRGRQICADPNKKWVQKYISDLKLNA
          60        70        80         

>>NP_001278397 (OMIM: 610757) C-C motif chemokine 4-like  (87 aa)
 initn: 249 init1: 153 opt: 268  Z-score: 369.1  bits: 72.9 E(85289): 8.1e-14
Smith-Waterman score: 268; 39.8% identity (76.3% similar) in 93 aa overlap (1-93:1-87)

               10        20        30        40        50        60
pF1KB0 MKISVAAIPFFLLITIALGTKTESSSRGPYHPSECCFTYTTYKIPRQRIMDYYETNSQCS
       ::. :... ...:.. :. . . :.  :   :. :::.::. :.::. ..:::::.: ::
NP_001 MKLCVTVLSLLVLVA-AFCSLALSAPMGSDPPTACCFSYTARKLPRNFVVDYYETSSLCS
               10         20        30        40        50         

               70        80        90   
pF1KB0 KPGIVFITKRGHSVCTNPSDKWVQDYIKDMKEN
       .:..:     :..::..::..:::.:. :.. :
NP_001 QPAVV-----GKQVCADPSESWVQEYVYDLELN
      60             70        80       

>>NP_002976 (OMIM: 187011) C-C motif chemokine 5 isoform  (91 aa)
 initn: 256 init1: 219 opt: 248  Z-score: 342.3  bits: 68.0 E(85289): 2.5e-12
Smith-Waterman score: 248; 38.7% identity (74.2% similar) in 93 aa overlap (1-91:1-89)

               10        20        30          40        50        
pF1KB0 MKISVAAIPFFLLITIALGTKTESSSRGPYHP--SECCFTYTTYKIPRQRIMDYYETNSQ
       ::.:.::.   .::. ::      .: .::    . :::.: .  .:: .: .:. :...
NP_002 MKVSAAALAV-ILIATAL---CAPASASPYSSDTTPCCFAYIARPLPRAHIKEYFYTSGK
               10            20        30        40        50      

       60        70        80        90   
pF1KB0 CSKPGIVFITKRGHSVCTNPSDKWVQDYIKDMKEN
       ::.:..::.:.....::.::  :::..::....  
NP_002 CSNPAVVFVTRKNRQVCANPEKKWVREYINSLEMS
         60        70        80        90 




93 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sat Nov  5 17:07:52 2016 done: Sat Nov  5 17:07:53 2016
 Total Scan time:  3.330 Total Display time: -0.010

Function used was FASTA [36.3.4 Apr, 2011]
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