Result of FASTA (omim) for pF1KB0903
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB0903, 90 aa
  1>>>pF1KB0903 90 - 90 aa - 90 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 4.9083+/-0.000268; mu= 10.5186+/- 0.017
 mean_var=57.5768+/-11.183, 0's: 0 Z-trim(118.4): 58  B-trim: 42 in 1/59
 Lambda= 0.169025
 statistics sampled from 31232 (31303) to 31232 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.771), E-opt: 0.2 (0.367), width:  16
 Scan time:  4.250

The best scores are:                                      opt bits E(85289)
NP_067546 (OMIM: 605354) caspase recruitment domai (  90)  600 153.6 3.9e-38
NP_443121 (OMIM: 615680) caspase recruitment domai (  97)  329 87.6 3.3e-18
NP_001017534 (OMIM: 615680) caspase recruitment do ( 197)  329 87.7 5.9e-18
XP_011540885 (OMIM: 615680) PREDICTED: caspase rec ( 265)  317 84.9 5.7e-17
NP_001244048 (OMIM: 147678) caspase-1 isoform beta ( 383)  315 84.5 1.1e-16
NP_001214 (OMIM: 147678) caspase-1 isoform beta pr ( 383)  315 84.5 1.1e-16
NP_150634 (OMIM: 147678) caspase-1 isoform alpha p ( 404)  315 84.5 1.1e-16
NP_001244047 (OMIM: 147678) caspase-1 isoform alph ( 404)  315 84.5 1.1e-16
NP_001007233 (OMIM: 609490) caspase recruitment do ( 110)  302 81.0 3.5e-16
XP_011541140 (OMIM: 609490) PREDICTED: caspase rec ( 125)  302 81.0 3.9e-16
XP_016873885 (OMIM: 147678) PREDICTED: caspase-1 i ( 374)  188 53.5 2.2e-07
XP_016873884 (OMIM: 147678) PREDICTED: caspase-1 i ( 380)  188 53.5 2.3e-07
XP_016873882 (OMIM: 147678) PREDICTED: caspase-1 i ( 401)  188 53.5 2.4e-07
XP_016873883 (OMIM: 147678) PREDICTED: caspase-1 i ( 401)  188 53.5 2.4e-07


>>NP_067546 (OMIM: 605354) caspase recruitment domain-co  (90 aa)
 initn: 600 init1: 600 opt: 600  Z-score: 805.6  bits: 153.6 E(85289): 3.9e-38
Smith-Waterman score: 600; 100.0% identity (100.0% similar) in 90 aa overlap (1-90:1-90)

               10        20        30        40        50        60
pF1KB0 MADQLLRKKRRIFIHSVGAGTINALLDCLLEDEVISQEDMNKVRDENDTVMDKARVLIDL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_067 MADQLLRKKRRIFIHSVGAGTINALLDCLLEDEVISQEDMNKVRDENDTVMDKARVLIDL
               10        20        30        40        50        60

               70        80        90
pF1KB0 VTGKGPKSCCKFIKHLCEEDPQLASKMGLH
       ::::::::::::::::::::::::::::::
NP_067 VTGKGPKSCCKFIKHLCEEDPQLASKMGLH
               70        80        90

>>NP_443121 (OMIM: 615680) caspase recruitment domain-co  (97 aa)
 initn: 329 init1: 329 opt: 329  Z-score: 447.9  bits: 87.6 E(85289): 3.3e-18
Smith-Waterman score: 329; 56.2% identity (80.9% similar) in 89 aa overlap (1-89:1-89)

               10        20        30        40        50        60
pF1KB0 MADQLLRKKRRIFIHSVGAGTINALLDCLLEDEVISQEDMNKVRDENDTVMDKARVLIDL
       :::..:..::..::::.: ::::.::: ::. .:..::.:.::. :: :::::.:.::: 
NP_443 MADKVLKEKRKLFIHSMGEGTINGLLDELLQTRVLNQEEMEKVKRENATVMDKTRALIDS
               10        20        30        40        50        60

               70        80        90       
pF1KB0 VTGKGPKSCCKFIKHLCEEDPQLASKMGLH       
       :  :: ..:   : ..::::  ::  .::        
NP_443 VIPKGAQACQICITYICEEDSYLAETLGLSAGPIPGN
               70        80        90       

>>NP_001017534 (OMIM: 615680) caspase recruitment domain  (197 aa)
 initn: 329 init1: 329 opt: 329  Z-score: 443.4  bits: 87.7 E(85289): 5.9e-18
Smith-Waterman score: 329; 56.2% identity (80.9% similar) in 89 aa overlap (1-89:1-89)

               10        20        30        40        50        60
pF1KB0 MADQLLRKKRRIFIHSVGAGTINALLDCLLEDEVISQEDMNKVRDENDTVMDKARVLIDL
       :::..:..::..::::.: ::::.::: ::. .:..::.:.::. :: :::::.:.::: 
NP_001 MADKVLKEKRKLFIHSMGEGTINGLLDELLQTRVLNQEEMEKVKRENATVMDKTRALIDS
               10        20        30        40        50        60

               70        80        90                              
pF1KB0 VTGKGPKSCCKFIKHLCEEDPQLASKMGLH                              
       :  :: ..:   : ..::::  ::  .::                               
NP_001 VIPKGAQACQICITYICEEDSYLAETLGLSAALQAVQDNPAMPTCSSPEGRIKLCFLEDA
               70        80        90       100       110       120

>>XP_011540885 (OMIM: 615680) PREDICTED: caspase recruit  (265 aa)
 initn: 317 init1: 317 opt: 317  Z-score: 425.6  bits: 84.9 E(85289): 5.7e-17
Smith-Waterman score: 317; 55.2% identity (80.5% similar) in 87 aa overlap (3-89:71-157)

                                           10        20        30  
pF1KB0                             MADQLLRKKRRIFIHSVGAGTINALLDCLLED
                                     :..:..::..::::.: ::::.::: ::. 
XP_011 LLFQEQVPGKKELWKGLALLEAIISICGSLDKVLKEKRKLFIHSMGEGTINGLLDELLQT
               50        60        70        80        90       100

             40        50        60        70        80        90  
pF1KB0 EVISQEDMNKVRDENDTVMDKARVLIDLVTGKGPKSCCKFIKHLCEEDPQLASKMGLH  
       .:..::.:.::. :: :::::.:.::: :  :: ..:   : ..::::  ::  .::   
XP_011 RVLNQEEMEKVKRENATVMDKTRALIDSVIPKGAQACQICITYICEEDSYLAETLGLSAA
              110       120       130       140       150       160

XP_011 LQAVQDNPAMPTCSSPEGRIKLCFLEDAQRIWKQKLQRCHVQNTIIKWSERYTSGSFEMQ
              170       180       190       200       210       220

>>NP_001244048 (OMIM: 147678) caspase-1 isoform beta pre  (383 aa)
 initn: 315 init1: 315 opt: 315  Z-score: 420.6  bits: 84.5 E(85289): 1.1e-16
Smith-Waterman score: 315; 53.9% identity (82.0% similar) in 89 aa overlap (1-89:1-89)

               10        20        30        40        50        60
pF1KB0 MADQLLRKKRRIFIHSVGAGTINALLDCLLEDEVISQEDMNKVRDENDTVMDKARVLIDL
       :::..:..::..::.:.: ::::.::: ::. .:...:.:.::. :: :::::.:.::: 
NP_001 MADKVLKEKRKLFIRSMGEGTINGLLDELLQTRVLNKEEMEKVKRENATVMDKTRALIDS
               10        20        30        40        50        60

               70        80        90                              
pF1KB0 VTGKGPKSCCKFIKHLCEEDPQLASKMGLH                              
       :  :: ..:   : ..::::  ::. .::                               
NP_001 VIPKGAQACQICITYICEEDSYLAGTLGLSAAPQAVQDNPAMPTSSGSEGNVKLCSLEEA
               70        80        90       100       110       120

>>NP_001214 (OMIM: 147678) caspase-1 isoform beta precur  (383 aa)
 initn: 315 init1: 315 opt: 315  Z-score: 420.6  bits: 84.5 E(85289): 1.1e-16
Smith-Waterman score: 315; 53.9% identity (82.0% similar) in 89 aa overlap (1-89:1-89)

               10        20        30        40        50        60
pF1KB0 MADQLLRKKRRIFIHSVGAGTINALLDCLLEDEVISQEDMNKVRDENDTVMDKARVLIDL
       :::..:..::..::.:.: ::::.::: ::. .:...:.:.::. :: :::::.:.::: 
NP_001 MADKVLKEKRKLFIRSMGEGTINGLLDELLQTRVLNKEEMEKVKRENATVMDKTRALIDS
               10        20        30        40        50        60

               70        80        90                              
pF1KB0 VTGKGPKSCCKFIKHLCEEDPQLASKMGLH                              
       :  :: ..:   : ..::::  ::. .::                               
NP_001 VIPKGAQACQICITYICEEDSYLAGTLGLSAAPQAVQDNPAMPTSSGSEGNVKLCSLEEA
               70        80        90       100       110       120

>>NP_150634 (OMIM: 147678) caspase-1 isoform alpha precu  (404 aa)
 initn: 315 init1: 315 opt: 315  Z-score: 420.3  bits: 84.5 E(85289): 1.1e-16
Smith-Waterman score: 315; 53.9% identity (82.0% similar) in 89 aa overlap (1-89:1-89)

               10        20        30        40        50        60
pF1KB0 MADQLLRKKRRIFIHSVGAGTINALLDCLLEDEVISQEDMNKVRDENDTVMDKARVLIDL
       :::..:..::..::.:.: ::::.::: ::. .:...:.:.::. :: :::::.:.::: 
NP_150 MADKVLKEKRKLFIRSMGEGTINGLLDELLQTRVLNKEEMEKVKRENATVMDKTRALIDS
               10        20        30        40        50        60

               70        80        90                              
pF1KB0 VTGKGPKSCCKFIKHLCEEDPQLASKMGLH                              
       :  :: ..:   : ..::::  ::. .::                               
NP_150 VIPKGAQACQICITYICEEDSYLAGTLGLSADQTSGNYLNMQDSQGVLSSFPAPQAVQDN
               70        80        90       100       110       120

>>NP_001244047 (OMIM: 147678) caspase-1 isoform alpha pr  (404 aa)
 initn: 315 init1: 315 opt: 315  Z-score: 420.3  bits: 84.5 E(85289): 1.1e-16
Smith-Waterman score: 315; 53.9% identity (82.0% similar) in 89 aa overlap (1-89:1-89)

               10        20        30        40        50        60
pF1KB0 MADQLLRKKRRIFIHSVGAGTINALLDCLLEDEVISQEDMNKVRDENDTVMDKARVLIDL
       :::..:..::..::.:.: ::::.::: ::. .:...:.:.::. :: :::::.:.::: 
NP_001 MADKVLKEKRKLFIRSMGEGTINGLLDELLQTRVLNKEEMEKVKRENATVMDKTRALIDS
               10        20        30        40        50        60

               70        80        90                              
pF1KB0 VTGKGPKSCCKFIKHLCEEDPQLASKMGLH                              
       :  :: ..:   : ..::::  ::. .::                               
NP_001 VIPKGAQACQICITYICEEDSYLAGTLGLSADQTSGNYLNMQDSQGVLSSFPAPQAVQDN
               70        80        90       100       110       120

>>NP_001007233 (OMIM: 609490) caspase recruitment domain  (110 aa)
 initn: 302 init1: 302 opt: 302  Z-score: 411.5  bits: 81.0 E(85289): 3.5e-16
Smith-Waterman score: 302; 55.1% identity (78.7% similar) in 89 aa overlap (1-89:1-89)

               10        20        30        40        50        60
pF1KB0 MADQLLRKKRRIFIHSVGAGTINALLDCLLEDEVISQEDMNKVRDENDTVMDKARVLIDL
       :::..:..::. ::.::: ::::.::  ::: .:.:::... :. :: :::::::.:.: 
NP_001 MADKVLKEKRKQFIRSVGEGTINGLLGELLETRVLSQEEIEIVKCENATVMDKARALLDS
               10        20        30        40        50        60

               70        80        90                    
pF1KB0 VTGKGPKSCCKFIKHLCEEDPQLASKMGLH                    
       :  ::  .:   : ..:::: .::. .::                     
NP_001 VIRKGAPACQICITYICEEDSHLAGTLGLSAGPTSGNHLTTQDSQIVLPS
               70        80        90       100       110

>>XP_011541140 (OMIM: 609490) PREDICTED: caspase recruit  (125 aa)
 initn: 302 init1: 302 opt: 302  Z-score: 410.7  bits: 81.0 E(85289): 3.9e-16
Smith-Waterman score: 302; 55.1% identity (78.7% similar) in 89 aa overlap (1-89:16-104)

                              10        20        30        40     
pF1KB0                MADQLLRKKRRIFIHSVGAGTINALLDCLLEDEVISQEDMNKVRD
                      :::..:..::. ::.::: ::::.::  ::: .:.:::... :. 
XP_011 MLSVSAYTRREERKAMADKVLKEKRKQFIRSVGEGTINGLLGELLETRVLSQEEIEIVKC
               10        20        30        40        50        60

          50        60        70        80        90               
pF1KB0 ENDTVMDKARVLIDLVTGKGPKSCCKFIKHLCEEDPQLASKMGLH               
       :: :::::::.:.: :  ::  .:   : ..:::: .::. .::                
XP_011 ENATVMDKARALLDSVIRKGAPACQICITYICEEDSHLAGTLGLSAGPTSGNHLTTQDSQ
               70        80        90       100       110       120

XP_011 IVLPS
            




90 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sat Nov  5 17:06:40 2016 done: Sat Nov  5 17:06:41 2016
 Total Scan time:  4.250 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]
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