FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB6459, 318 aa
  1>>>pF1KB6459 318 - 318 aa - 318 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 6.0862+/-0.000398; mu= 11.6717+/- 0.025
 mean_var=74.1929+/-14.817, 0's: 0 Z-trim(112.6): 32  B-trim: 27 in 1/52
 Lambda= 0.148899
 statistics sampled from 21635 (21644) to 21635 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.627), E-opt: 0.2 (0.254), width:  16
 Scan time:  7.450

The best scores are:                                      opt bits E(85289)
NP_659486 (OMIM: 609867) ubiquitin-like domain-con ( 318) 2093 459.0 5.8e-129
NP_005142 (OMIM: 607274) ubiquitin carboxyl-termin ( 494)  145 40.6   0.008


>>NP_659486 (OMIM: 609867) ubiquitin-like domain-contain  (318 aa)
 initn: 2093 init1: 2093 opt: 2093  Z-score: 2436.3  bits: 459.0 E(85289): 5.8e-129
Smith-Waterman score: 2093; 100.0% identity (100.0% similar) in 318 aa overlap (1-318:1-318)

               10        20        30        40        50        60
pF1KB6 MALPIIVKWGGQEYSVTTLSEDDTVLDLKQFLKTLTGVLPERQKLLGLKVKGKPAENDVK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_659 MALPIIVKWGGQEYSVTTLSEDDTVLDLKQFLKTLTGVLPERQKLLGLKVKGKPAENDVK
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB6 LGALKLKPNTKIMMMGTREESLEDVLGPPPDNDDVVNDFDIEDEVVEVENREENLLKISR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_659 LGALKLKPNTKIMMMGTREESLEDVLGPPPDNDDVVNDFDIEDEVVEVENREENLLKISR
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB6 RVKEYKVEILNPPREGKKLLVLDVDYTLFDHRSCAETGVELMRPYLHEFLTSAYEDYDIV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_659 RVKEYKVEILNPPREGKKLLVLDVDYTLFDHRSCAETGVELMRPYLHEFLTSAYEDYDIV
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB6 IWSATNMKWIEAKMKELGVSTNANYKITFMLDSAAMITVHTPRRGLIDVKPLGVIWGKFS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_659 IWSATNMKWIEAKMKELGVSTNANYKITFMLDSAAMITVHTPRRGLIDVKPLGVIWGKFS
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB6 EFYSKKNTIMFDDIGRNFLMNPQNGLKIRPFMKAHLNRDKDKELLKLTQYLKEIAKLDDF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_659 EFYSKKNTIMFDDIGRNFLMNPQNGLKIRPFMKAHLNRDKDKELLKLTQYLKEIAKLDDF
              250       260       270       280       290       300

              310        
pF1KB6 LDLNHKYWERYLSKKQGQ
       ::::::::::::::::::
NP_659 LDLNHKYWERYLSKKQGQ
              310        

>>NP_005142 (OMIM: 607274) ubiquitin carboxyl-terminal h  (494 aa)
 initn: 128 init1: 103 opt: 145  Z-score: 171.7  bits: 40.6 E(85289): 0.008
Smith-Waterman score: 148; 32.0% identity (57.0% similar) in 100 aa overlap (5-104:6-95)

                10        20        30        40        50         
pF1KB6  MALPIIVKWGGQEYSVTTLSEDDTVLDLKQFLKTLTGVLPERQKLLGLKVKGKPAENDV
            . :::: ...  . :. :.  . .:  : .:::: : :::..   :::   ..: 
NP_005 MPLYSVTVKWGKEKFEGVELNTDEPPMVFKAQLFALTGVQPARQKVM---VKGGTLKDD-
               10        20        30        40           50       

      60        70        80        90       100       110         
pF1KB6 KLGALKLKPNTKIMMMGTREESLEDVLGPPPDNDDVVNDFDIEDEVVEVENREENLLKIS
         : .:.: .  ..:::.      :.:   :.   :  . :. .:               
NP_005 DWGNIKIKNGMTLLMMGS-----ADALPEEPSAKTVFVE-DMTEEQLASAMELPCGLTNL
         60        70             80        90        100       110

     120       130       140       150       160       170         
pF1KB6 RRVKEYKVEILNPPREGKKLLVLDVDYTLFDHRSCAETGVELMRPYLHEFLTSAYEDYDI
                                                                   
NP_005 GNTCYMNATVQCIRSVPELKDALKRYAGALRASGEMASAQYITAALRDLFDSMDKTSSSI
              120       130       140       150       160       170




318 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sat Nov  5 16:52:00 2016 done: Sat Nov  5 16:52:01 2016
 Total Scan time:  7.450 Total Display time: -0.030

Function used was FASTA [36.3.4 Apr, 2011]