Result of FASTA (ccds) for pF1KB9986
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB9986, 712 aa
  1>>>pF1KB9986 712 - 712 aa - 712 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 6.3818+/-0.00107; mu= 14.5917+/- 0.064
 mean_var=80.3737+/-16.226, 0's: 0 Z-trim(103.5): 22  B-trim: 0 in 0/50
 Lambda= 0.143060
 statistics sampled from 7445 (7450) to 7445 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.586), E-opt: 0.2 (0.229), width:  16
 Scan time:  2.540

The best scores are:                                      opt bits E(32554)
CCDS5012.1 ORC3 gene_id:23595|Hs108|chr6           ( 712) 4673 974.7       0
CCDS43486.1 ORC3 gene_id:23595|Hs108|chr6          ( 711) 4656 971.2       0
CCDS56440.1 ORC3 gene_id:23595|Hs108|chr6          ( 568) 3716 777.2       0


>>CCDS5012.1 ORC3 gene_id:23595|Hs108|chr6                (712 aa)
 initn: 4673 init1: 4673 opt: 4673  Z-score: 5210.9  bits: 974.7 E(32554):    0
Smith-Waterman score: 4673; 100.0% identity (100.0% similar) in 712 aa overlap (1-712:1-712)

               10        20        30        40        50        60
pF1KB9 MATSSMSKGCFVFKPNSKKRKISLPIEDYFNKGKNEPEDSKLRFETYQLIWQQMKSENER
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS50 MATSSMSKGCFVFKPNSKKRKISLPIEDYFNKGKNEPEDSKLRFETYQLIWQQMKSENER
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB9 LQEELNKNLFDNLIEFLQKSHSGFQKNSRDLGGQIKLREIPTAALVLGVNVTDHDLTFGS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS50 LQEELNKNLFDNLIEFLQKSHSGFQKNSRDLGGQIKLREIPTAALVLGVNVTDHDLTFGS
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB9 LTEALQNNVTPYVVSLQAKDCPDMKHFLQKLISQLMDCCVDIKSKEEESVHVTQRKTHYS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS50 LTEALQNNVTPYVVSLQAKDCPDMKHFLQKLISQLMDCCVDIKSKEEESVHVTQRKTHYS
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB9 MDSLSSWYMTVTQKTDPKMLSKKRTTSSQWQSPPVVVILKDMESFATKVLQDFIIISSQH
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS50 MDSLSSWYMTVTQKTDPKMLSKKRTTSSQWQSPPVVVILKDMESFATKVLQDFIIISSQH
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB9 LHEFPLILIFGIATSPIIIHRLLPHAVSSLLCIELFQSLSCKEHLTTVLDKLLLTTQFPF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS50 LHEFPLILIFGIATSPIIIHRLLPHAVSSLLCIELFQSLSCKEHLTTVLDKLLLTTQFPF
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KB9 KINEKVLQVLTNIFLYHDFSVQNFIKGLQLSLLEHFYSQPLSVLCCNLPEAKRRINFLSN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS50 KINEKVLQVLTNIFLYHDFSVQNFIKGLQLSLLEHFYSQPLSVLCCNLPEAKRRINFLSN
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KB9 NQCENIRRLPSFRRYVEKQASEKQVALLTNERYLKEETQLLLENLHVYHMNYFLVLRCLH
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS50 NQCENIRRLPSFRRYVEKQASEKQVALLTNERYLKEETQLLLENLHVYHMNYFLVLRCLH
              370       380       390       400       410       420

              430       440       450       460       470       480
pF1KB9 KFTSSLPKYPLGRQIRELYCTCLEKNIWDSEEYASVLQLLRMLAKDELMTILEKCFKVFK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS50 KFTSSLPKYPLGRQIRELYCTCLEKNIWDSEEYASVLQLLRMLAKDELMTILEKCFKVFK
              430       440       450       460       470       480

              490       500       510       520       530       540
pF1KB9 SYCENHLGSTAKRIEEFLAQFQSLDAETKEEEDASGSQPKGLQKTDLYHLQKSLLEMKEL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS50 SYCENHLGSTAKRIEEFLAQFQSLDAETKEEEDASGSQPKGLQKTDLYHLQKSLLEMKEL
              490       500       510       520       530       540

              550       560       570       580       590       600
pF1KB9 RRSKKQTKFEVLRENVVNFIDCLVREYLLPPETQPLHEVVYFSAAHALREHLNAAPRIAL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS50 RRSKKQTKFEVLRENVVNFIDCLVREYLLPPETQPLHEVVYFSAAHALREHLNAAPRIAL
              550       560       570       580       590       600

              610       620       630       640       650       660
pF1KB9 HTALNNPYYYLKNEALKSEEGCIPNIAPDICIAYKLHLECSRLINLVDWSEAFATVVTAA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS50 HTALNNPYYYLKNEALKSEEGCIPNIAPDICIAYKLHLECSRLINLVDWSEAFATVVTAA
              610       620       630       640       650       660

              670       680       690       700       710  
pF1KB9 EKMDANSATSEEMNEIIHARFIRAVSELELLGFIKPTKQKTDHVARLTWGGC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS50 EKMDANSATSEEMNEIIHARFIRAVSELELLGFIKPTKQKTDHVARLTWGGC
              670       680       690       700       710  

>>CCDS43486.1 ORC3 gene_id:23595|Hs108|chr6               (711 aa)
 initn: 3331 init1: 3331 opt: 4656  Z-score: 5191.9  bits: 971.2 E(32554):    0
Smith-Waterman score: 4656; 99.9% identity (99.9% similar) in 712 aa overlap (1-712:1-711)

               10        20        30        40        50        60
pF1KB9 MATSSMSKGCFVFKPNSKKRKISLPIEDYFNKGKNEPEDSKLRFETYQLIWQQMKSENER
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 MATSSMSKGCFVFKPNSKKRKISLPIEDYFNKGKNEPEDSKLRFETYQLIWQQMKSENER
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB9 LQEELNKNLFDNLIEFLQKSHSGFQKNSRDLGGQIKLREIPTAALVLGVNVTDHDLTFGS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 LQEELNKNLFDNLIEFLQKSHSGFQKNSRDLGGQIKLREIPTAALVLGVNVTDHDLTFGS
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB9 LTEALQNNVTPYVVSLQAKDCPDMKHFLQKLISQLMDCCVDIKSKEEESVHVTQRKTHYS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 LTEALQNNVTPYVVSLQAKDCPDMKHFLQKLISQLMDCCVDIKSKEEESVHVTQRKTHYS
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB9 MDSLSSWYMTVTQKTDPKMLSKKRTTSSQWQSPPVVVILKDMESFATKVLQDFIIISSQH
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 MDSLSSWYMTVTQKTDPKMLSKKRTTSSQWQSPPVVVILKDMESFATKVLQDFIIISSQH
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB9 LHEFPLILIFGIATSPIIIHRLLPHAVSSLLCIELFQSLSCKEHLTTVLDKLLLTTQFPF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 LHEFPLILIFGIATSPIIIHRLLPHAVSSLLCIELFQSLSCKEHLTTVLDKLLLTTQFPF
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KB9 KINEKVLQVLTNIFLYHDFSVQNFIKGLQLSLLEHFYSQPLSVLCCNLPEAKRRINFLSN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 KINEKVLQVLTNIFLYHDFSVQNFIKGLQLSLLEHFYSQPLSVLCCNLPEAKRRINFLSN
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KB9 NQCENIRRLPSFRRYVEKQASEKQVALLTNERYLKEETQLLLENLHVYHMNYFLVLRCLH
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 NQCENIRRLPSFRRYVEKQASEKQVALLTNERYLKEETQLLLENLHVYHMNYFLVLRCLH
              370       380       390       400       410       420

              430       440       450       460       470       480
pF1KB9 KFTSSLPKYPLGRQIRELYCTCLEKNIWDSEEYASVLQLLRMLAKDELMTILEKCFKVFK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 KFTSSLPKYPLGRQIRELYCTCLEKNIWDSEEYASVLQLLRMLAKDELMTILEKCFKVFK
              430       440       450       460       470       480

              490       500       510       520       530       540
pF1KB9 SYCENHLGSTAKRIEEFLAQFQSLDAETKEEEDASGSQPKGLQKTDLYHLQKSLLEMKEL
       ::::::::::::::::::::::::: ::::::::::::::::::::::::::::::::::
CCDS43 SYCENHLGSTAKRIEEFLAQFQSLD-ETKEEEDASGSQPKGLQKTDLYHLQKSLLEMKEL
              490       500        510       520       530         

              550       560       570       580       590       600
pF1KB9 RRSKKQTKFEVLRENVVNFIDCLVREYLLPPETQPLHEVVYFSAAHALREHLNAAPRIAL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 RRSKKQTKFEVLRENVVNFIDCLVREYLLPPETQPLHEVVYFSAAHALREHLNAAPRIAL
     540       550       560       570       580       590         

              610       620       630       640       650       660
pF1KB9 HTALNNPYYYLKNEALKSEEGCIPNIAPDICIAYKLHLECSRLINLVDWSEAFATVVTAA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 HTALNNPYYYLKNEALKSEEGCIPNIAPDICIAYKLHLECSRLINLVDWSEAFATVVTAA
     600       610       620       630       640       650         

              670       680       690       700       710  
pF1KB9 EKMDANSATSEEMNEIIHARFIRAVSELELLGFIKPTKQKTDHVARLTWGGC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 EKMDANSATSEEMNEIIHARFIRAVSELELLGFIKPTKQKTDHVARLTWGGC
     660       670       680       690       700       710 

>>CCDS56440.1 ORC3 gene_id:23595|Hs108|chr6               (568 aa)
 initn: 2391 init1: 2391 opt: 3716  Z-score: 4145.0  bits: 777.2 E(32554):    0
Smith-Waterman score: 3716; 99.8% identity (99.8% similar) in 569 aa overlap (144-712:1-568)

           120       130       140       150       160       170   
pF1KB9 HDLTFGSLTEALQNNVTPYVVSLQAKDCPDMKHFLQKLISQLMDCCVDIKSKEEESVHVT
                                     ::::::::::::::::::::::::::::::
CCDS56                               MKHFLQKLISQLMDCCVDIKSKEEESVHVT
                                             10        20        30

           180       190       200       210       220       230   
pF1KB9 QRKTHYSMDSLSSWYMTVTQKTDPKMLSKKRTTSSQWQSPPVVVILKDMESFATKVLQDF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS56 QRKTHYSMDSLSSWYMTVTQKTDPKMLSKKRTTSSQWQSPPVVVILKDMESFATKVLQDF
               40        50        60        70        80        90

           240       250       260       270       280       290   
pF1KB9 IIISSQHLHEFPLILIFGIATSPIIIHRLLPHAVSSLLCIELFQSLSCKEHLTTVLDKLL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS56 IIISSQHLHEFPLILIFGIATSPIIIHRLLPHAVSSLLCIELFQSLSCKEHLTTVLDKLL
              100       110       120       130       140       150

           300       310       320       330       340       350   
pF1KB9 LTTQFPFKINEKVLQVLTNIFLYHDFSVQNFIKGLQLSLLEHFYSQPLSVLCCNLPEAKR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS56 LTTQFPFKINEKVLQVLTNIFLYHDFSVQNFIKGLQLSLLEHFYSQPLSVLCCNLPEAKR
              160       170       180       190       200       210

           360       370       380       390       400       410   
pF1KB9 RINFLSNNQCENIRRLPSFRRYVEKQASEKQVALLTNERYLKEETQLLLENLHVYHMNYF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS56 RINFLSNNQCENIRRLPSFRRYVEKQASEKQVALLTNERYLKEETQLLLENLHVYHMNYF
              220       230       240       250       260       270

           420       430       440       450       460       470   
pF1KB9 LVLRCLHKFTSSLPKYPLGRQIRELYCTCLEKNIWDSEEYASVLQLLRMLAKDELMTILE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS56 LVLRCLHKFTSSLPKYPLGRQIRELYCTCLEKNIWDSEEYASVLQLLRMLAKDELMTILE
              280       290       300       310       320       330

           480       490       500       510       520       530   
pF1KB9 KCFKVFKSYCENHLGSTAKRIEEFLAQFQSLDAETKEEEDASGSQPKGLQKTDLYHLQKS
       :::::::::::::::::::::::::::::::: :::::::::::::::::::::::::::
CCDS56 KCFKVFKSYCENHLGSTAKRIEEFLAQFQSLD-ETKEEEDASGSQPKGLQKTDLYHLQKS
              340       350       360        370       380         

           540       550       560       570       580       590   
pF1KB9 LLEMKELRRSKKQTKFEVLRENVVNFIDCLVREYLLPPETQPLHEVVYFSAAHALREHLN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS56 LLEMKELRRSKKQTKFEVLRENVVNFIDCLVREYLLPPETQPLHEVVYFSAAHALREHLN
     390       400       410       420       430       440         

           600       610       620       630       640       650   
pF1KB9 AAPRIALHTALNNPYYYLKNEALKSEEGCIPNIAPDICIAYKLHLECSRLINLVDWSEAF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS56 AAPRIALHTALNNPYYYLKNEALKSEEGCIPNIAPDICIAYKLHLECSRLINLVDWSEAF
     450       460       470       480       490       500         

           660       670       680       690       700       710  
pF1KB9 ATVVTAAEKMDANSATSEEMNEIIHARFIRAVSELELLGFIKPTKQKTDHVARLTWGGC
       :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS56 ATVVTAAEKMDANSATSEEMNEIIHARFIRAVSELELLGFIKPTKQKTDHVARLTWGGC
     510       520       530       540       550       560        




712 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sat Nov  5 16:04:53 2016 done: Sat Nov  5 16:04:53 2016
 Total Scan time:  2.540 Total Display time:  0.030

Function used was FASTA [36.3.4 Apr, 2011]
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