Result of FASTA (ccds) for pF1KB5901
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB5901, 500 aa
  1>>>pF1KB5901 500 - 500 aa - 500 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 6.0084+/-0.000703; mu= 15.3771+/- 0.043
 mean_var=78.8997+/-15.530, 0's: 0 Z-trim(111.0): 7  B-trim: 0 in 0/50
 Lambda= 0.144390
 statistics sampled from 12001 (12008) to 12001 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.726), E-opt: 0.2 (0.369), width:  16
 Scan time:  3.190

The best scores are:                                      opt bits E(32554)
CCDS3437.1 RBPJ gene_id:3516|Hs108|chr4            ( 500) 3389 715.2 4.2e-206
CCDS43219.1 RBPJ gene_id:3516|Hs108|chr4           ( 487) 3248 685.8 2.8e-197
CCDS3436.1 RBPJ gene_id:3516|Hs108|chr4            ( 485) 3240 684.1 8.9e-197
CCDS33969.1 RBPJ gene_id:3516|Hs108|chr4           ( 486) 3240 684.1 8.9e-197
CCDS63283.1 RBPJL gene_id:11317|Hs108|chr20        ( 516) 1634 349.6 4.8e-96
CCDS63284.1 RBPJL gene_id:11317|Hs108|chr20        ( 471) 1425 306.1 5.7e-83
CCDS13349.1 RBPJL gene_id:11317|Hs108|chr20        ( 517) 1381 296.9 3.5e-80


>>CCDS3437.1 RBPJ gene_id:3516|Hs108|chr4                 (500 aa)
 initn: 3389 init1: 3389 opt: 3389  Z-score: 3813.8  bits: 715.2 E(32554): 4.2e-206
Smith-Waterman score: 3389; 100.0% identity (100.0% similar) in 500 aa overlap (1-500:1-500)

               10        20        30        40        50        60
pF1KB5 MDHTEGSPAEEPPAHAPSPGKFGERPPPKRLTREAMRNYLKERGDQTVLILHAKVAQKSY
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 MDHTEGSPAEEPPAHAPSPGKFGERPPPKRLTREAMRNYLKERGDQTVLILHAKVAQKSY
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB5 GNEKRFFCPPPCVYLMGSGWKKKKEQMERDGCSEQESQPCAFIGIGNSDQEMQQLNLEGK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 GNEKRFFCPPPCVYLMGSGWKKKKEQMERDGCSEQESQPCAFIGIGNSDQEMQQLNLEGK
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB5 NYCTAKTLYISDSDKRKHFMLSVKMFYGNSDDIGVFLSKRIKVISKPSKKKQSLKNADLC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 NYCTAKTLYISDSDKRKHFMLSVKMFYGNSDDIGVFLSKRIKVISKPSKKKQSLKNADLC
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB5 IASGTKVALFNRLRSQTVSTRYLHVEGGNFHASSQQWGAFFIHLLDDDESEGEEFTVRDG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 IASGTKVALFNRLRSQTVSTRYLHVEGGNFHASSQQWGAFFIHLLDDDESEGEEFTVRDG
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB5 YIHYGQTVKLVCSVTGMALPRLIIRKVDKQTALLDADDPVSQLHKCAFYLKDTERMYLCL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 YIHYGQTVKLVCSVTGMALPRLIIRKVDKQTALLDADDPVSQLHKCAFYLKDTERMYLCL
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KB5 SQERIIQFQATPCPKEPNKEMINDGASWTIISTDKAEYTFYEGMGPVLAPVTPVPVVESL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 SQERIIQFQATPCPKEPNKEMINDGASWTIISTDKAEYTFYEGMGPVLAPVTPVPVVESL
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KB5 QLNGGGDVAMLELTGQNFTPNLRVWFGDVEAETMYRCGESMLCVVPDISAFREGWRWVRQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 QLNGGGDVAMLELTGQNFTPNLRVWFGDVEAETMYRCGESMLCVVPDISAFREGWRWVRQ
              370       380       390       400       410       420

              430       440       450       460       470       480
pF1KB5 PVQVPVTLVRNDGIIYSTSLTFTYTPEPGPRPHCSAAGAILRANSSQVPPNESNTNSEGS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 PVQVPVTLVRNDGIIYSTSLTFTYTPEPGPRPHCSAAGAILRANSSQVPPNESNTNSEGS
              430       440       450       460       470       480

              490       500
pF1KB5 YTNASTNSTSVTSSTATVVS
       ::::::::::::::::::::
CCDS34 YTNASTNSTSVTSSTATVVS
              490       500

>>CCDS43219.1 RBPJ gene_id:3516|Hs108|chr4                (487 aa)
 initn: 3248 init1: 3248 opt: 3248  Z-score: 3655.2  bits: 685.8 E(32554): 2.8e-197
Smith-Waterman score: 3248; 100.0% identity (100.0% similar) in 481 aa overlap (20-500:7-487)

               10        20        30        40        50        60
pF1KB5 MDHTEGSPAEEPPAHAPSPGKFGERPPPKRLTREAMRNYLKERGDQTVLILHAKVAQKSY
                          :::::::::::::::::::::::::::::::::::::::::
CCDS43              MAPVVTGKFGERPPPKRLTREAMRNYLKERGDQTVLILHAKVAQKSY
                            10        20        30        40       

               70        80        90       100       110       120
pF1KB5 GNEKRFFCPPPCVYLMGSGWKKKKEQMERDGCSEQESQPCAFIGIGNSDQEMQQLNLEGK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 GNEKRFFCPPPCVYLMGSGWKKKKEQMERDGCSEQESQPCAFIGIGNSDQEMQQLNLEGK
        50        60        70        80        90       100       

              130       140       150       160       170       180
pF1KB5 NYCTAKTLYISDSDKRKHFMLSVKMFYGNSDDIGVFLSKRIKVISKPSKKKQSLKNADLC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 NYCTAKTLYISDSDKRKHFMLSVKMFYGNSDDIGVFLSKRIKVISKPSKKKQSLKNADLC
       110       120       130       140       150       160       

              190       200       210       220       230       240
pF1KB5 IASGTKVALFNRLRSQTVSTRYLHVEGGNFHASSQQWGAFFIHLLDDDESEGEEFTVRDG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 IASGTKVALFNRLRSQTVSTRYLHVEGGNFHASSQQWGAFFIHLLDDDESEGEEFTVRDG
       170       180       190       200       210       220       

              250       260       270       280       290       300
pF1KB5 YIHYGQTVKLVCSVTGMALPRLIIRKVDKQTALLDADDPVSQLHKCAFYLKDTERMYLCL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 YIHYGQTVKLVCSVTGMALPRLIIRKVDKQTALLDADDPVSQLHKCAFYLKDTERMYLCL
       230       240       250       260       270       280       

              310       320       330       340       350       360
pF1KB5 SQERIIQFQATPCPKEPNKEMINDGASWTIISTDKAEYTFYEGMGPVLAPVTPVPVVESL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 SQERIIQFQATPCPKEPNKEMINDGASWTIISTDKAEYTFYEGMGPVLAPVTPVPVVESL
       290       300       310       320       330       340       

              370       380       390       400       410       420
pF1KB5 QLNGGGDVAMLELTGQNFTPNLRVWFGDVEAETMYRCGESMLCVVPDISAFREGWRWVRQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 QLNGGGDVAMLELTGQNFTPNLRVWFGDVEAETMYRCGESMLCVVPDISAFREGWRWVRQ
       350       360       370       380       390       400       

              430       440       450       460       470       480
pF1KB5 PVQVPVTLVRNDGIIYSTSLTFTYTPEPGPRPHCSAAGAILRANSSQVPPNESNTNSEGS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 PVQVPVTLVRNDGIIYSTSLTFTYTPEPGPRPHCSAAGAILRANSSQVPPNESNTNSEGS
       410       420       430       440       450       460       

              490       500
pF1KB5 YTNASTNSTSVTSSTATVVS
       ::::::::::::::::::::
CCDS43 YTNASTNSTSVTSSTATVVS
       470       480       

>>CCDS3436.1 RBPJ gene_id:3516|Hs108|chr4                 (485 aa)
 initn: 3240 init1: 3240 opt: 3240  Z-score: 3646.2  bits: 684.1 E(32554): 8.9e-197
Smith-Waterman score: 3240; 100.0% identity (100.0% similar) in 480 aa overlap (21-500:6-485)

               10        20        30        40        50        60
pF1KB5 MDHTEGSPAEEPPAHAPSPGKFGERPPPKRLTREAMRNYLKERGDQTVLILHAKVAQKSY
                           ::::::::::::::::::::::::::::::::::::::::
CCDS34                MGGCRKFGERPPPKRLTREAMRNYLKERGDQTVLILHAKVAQKSY
                              10        20        30        40     

               70        80        90       100       110       120
pF1KB5 GNEKRFFCPPPCVYLMGSGWKKKKEQMERDGCSEQESQPCAFIGIGNSDQEMQQLNLEGK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 GNEKRFFCPPPCVYLMGSGWKKKKEQMERDGCSEQESQPCAFIGIGNSDQEMQQLNLEGK
          50        60        70        80        90       100     

              130       140       150       160       170       180
pF1KB5 NYCTAKTLYISDSDKRKHFMLSVKMFYGNSDDIGVFLSKRIKVISKPSKKKQSLKNADLC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 NYCTAKTLYISDSDKRKHFMLSVKMFYGNSDDIGVFLSKRIKVISKPSKKKQSLKNADLC
         110       120       130       140       150       160     

              190       200       210       220       230       240
pF1KB5 IASGTKVALFNRLRSQTVSTRYLHVEGGNFHASSQQWGAFFIHLLDDDESEGEEFTVRDG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 IASGTKVALFNRLRSQTVSTRYLHVEGGNFHASSQQWGAFFIHLLDDDESEGEEFTVRDG
         170       180       190       200       210       220     

              250       260       270       280       290       300
pF1KB5 YIHYGQTVKLVCSVTGMALPRLIIRKVDKQTALLDADDPVSQLHKCAFYLKDTERMYLCL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 YIHYGQTVKLVCSVTGMALPRLIIRKVDKQTALLDADDPVSQLHKCAFYLKDTERMYLCL
         230       240       250       260       270       280     

              310       320       330       340       350       360
pF1KB5 SQERIIQFQATPCPKEPNKEMINDGASWTIISTDKAEYTFYEGMGPVLAPVTPVPVVESL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 SQERIIQFQATPCPKEPNKEMINDGASWTIISTDKAEYTFYEGMGPVLAPVTPVPVVESL
         290       300       310       320       330       340     

              370       380       390       400       410       420
pF1KB5 QLNGGGDVAMLELTGQNFTPNLRVWFGDVEAETMYRCGESMLCVVPDISAFREGWRWVRQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 QLNGGGDVAMLELTGQNFTPNLRVWFGDVEAETMYRCGESMLCVVPDISAFREGWRWVRQ
         350       360       370       380       390       400     

              430       440       450       460       470       480
pF1KB5 PVQVPVTLVRNDGIIYSTSLTFTYTPEPGPRPHCSAAGAILRANSSQVPPNESNTNSEGS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 PVQVPVTLVRNDGIIYSTSLTFTYTPEPGPRPHCSAAGAILRANSSQVPPNESNTNSEGS
         410       420       430       440       450       460     

              490       500
pF1KB5 YTNASTNSTSVTSSTATVVS
       ::::::::::::::::::::
CCDS34 YTNASTNSTSVTSSTATVVS
         470       480     

>>CCDS33969.1 RBPJ gene_id:3516|Hs108|chr4                (486 aa)
 initn: 3240 init1: 3240 opt: 3240  Z-score: 3646.2  bits: 684.1 E(32554): 8.9e-197
Smith-Waterman score: 3240; 100.0% identity (100.0% similar) in 480 aa overlap (21-500:7-486)

               10        20        30        40        50        60
pF1KB5 MDHTEGSPAEEPPAHAPSPGKFGERPPPKRLTREAMRNYLKERGDQTVLILHAKVAQKSY
                           ::::::::::::::::::::::::::::::::::::::::
CCDS33               MAWIKRKFGERPPPKRLTREAMRNYLKERGDQTVLILHAKVAQKSY
                             10        20        30        40      

               70        80        90       100       110       120
pF1KB5 GNEKRFFCPPPCVYLMGSGWKKKKEQMERDGCSEQESQPCAFIGIGNSDQEMQQLNLEGK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 GNEKRFFCPPPCVYLMGSGWKKKKEQMERDGCSEQESQPCAFIGIGNSDQEMQQLNLEGK
         50        60        70        80        90       100      

              130       140       150       160       170       180
pF1KB5 NYCTAKTLYISDSDKRKHFMLSVKMFYGNSDDIGVFLSKRIKVISKPSKKKQSLKNADLC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 NYCTAKTLYISDSDKRKHFMLSVKMFYGNSDDIGVFLSKRIKVISKPSKKKQSLKNADLC
        110       120       130       140       150       160      

              190       200       210       220       230       240
pF1KB5 IASGTKVALFNRLRSQTVSTRYLHVEGGNFHASSQQWGAFFIHLLDDDESEGEEFTVRDG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 IASGTKVALFNRLRSQTVSTRYLHVEGGNFHASSQQWGAFFIHLLDDDESEGEEFTVRDG
        170       180       190       200       210       220      

              250       260       270       280       290       300
pF1KB5 YIHYGQTVKLVCSVTGMALPRLIIRKVDKQTALLDADDPVSQLHKCAFYLKDTERMYLCL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 YIHYGQTVKLVCSVTGMALPRLIIRKVDKQTALLDADDPVSQLHKCAFYLKDTERMYLCL
        230       240       250       260       270       280      

              310       320       330       340       350       360
pF1KB5 SQERIIQFQATPCPKEPNKEMINDGASWTIISTDKAEYTFYEGMGPVLAPVTPVPVVESL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 SQERIIQFQATPCPKEPNKEMINDGASWTIISTDKAEYTFYEGMGPVLAPVTPVPVVESL
        290       300       310       320       330       340      

              370       380       390       400       410       420
pF1KB5 QLNGGGDVAMLELTGQNFTPNLRVWFGDVEAETMYRCGESMLCVVPDISAFREGWRWVRQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 QLNGGGDVAMLELTGQNFTPNLRVWFGDVEAETMYRCGESMLCVVPDISAFREGWRWVRQ
        350       360       370       380       390       400      

              430       440       450       460       470       480
pF1KB5 PVQVPVTLVRNDGIIYSTSLTFTYTPEPGPRPHCSAAGAILRANSSQVPPNESNTNSEGS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 PVQVPVTLVRNDGIIYSTSLTFTYTPEPGPRPHCSAAGAILRANSSQVPPNESNTNSEGS
        410       420       430       440       450       460      

              490       500
pF1KB5 YTNASTNSTSVTSSTATVVS
       ::::::::::::::::::::
CCDS33 YTNASTNSTSVTSSTATVVS
        470       480      

>>CCDS63283.1 RBPJL gene_id:11317|Hs108|chr20             (516 aa)
 initn: 1338 init1: 460 opt: 1634  Z-score: 1837.8  bits: 349.6 E(32554): 4.8e-96
Smith-Waterman score: 1634; 54.4% identity (77.6% similar) in 447 aa overlap (19-452:39-482)

                           10        20        30          40      
pF1KB5             MDHTEGSPAEEPPAHAPSPGKFGERPPPKRLT--REAMRNYLKERGDQ
                                     :: .  :  :.. :  : ..:  :... .:
CCDS63 PSVPPNPLTHLSLQDRSEMQLQSEADRRSLPGTW-TRSSPEHTTILRGGVRRCLQQQCEQ
       10        20        30        40         50        60       

         50        60        70        80        90       100      
pF1KB5 TVLILHAKVAQKSYGNEKRFFCPPPCVYLMGSGWKKKKEQMERDGCSEQESQPCAFIGIG
       :: :::::::::::::::::::::::::: : ::. :  : .    .:     :...:. 
CCDS63 TVRILHAKVAQKSYGNEKRFFCPPPCVYLSGPGWRVKPGQDQAHQAGETGPTVCGYMGLD
        70        80        90       100       110       120       

           110           120       130       140       150         
pF1KB5 N---SDQEMQQLNLE----GKNYCTAKTLYISDSDKRKHFMLSVKMFYGNSDDIGVFLSK
       .   :  : :.::.:    ....  ::::::::.:::::: : ...   .. ..:.: :.
CCDS63 SASGSATETQKLNFEQQPDSREFGCAKTLYISDADKRKHFRLVLRLVLRGGRELGTFHSR
       130       140       150       160       170       180       

     160       170       180       190       200       210         
pF1KB5 RIKVISKPSKKKQSLKNADLCIASGTKVALFNRLRSQTVSTRYLHVEGGNFHASSQQWGA
        ::::::::.:::::::.::::.::.::.::::::::::::::: :: : : ::..::.:
CCDS63 LIKVISKPSQKKQSLKNTDLCISSGSKVSLFNRLRSQTVSTRYLSVEDGAFVASARQWAA
       190       200       210       220       230       240       

     220       230       240       250       260       270         
pF1KB5 FFIHLLDDDESEGEEFTVRDGYIHYGQTVKLVCSVTGMALPRLIIRKVDKQTALLDADDP
       : .:: :   ..:. :  :.::..::. :.:::.:::..:: .::::: :: ::::.:.:
CCDS63 FTLHLADGHSAQGD-FPPREGYVRYGSLVQLVCTVTGITLPPMIIRKVAKQCALLDVDEP
       250       260        270       280       290       300      

     280       290           300       310       320       330     
pF1KB5 VSQLHKCAFYLKDTER----MYLCLSQERIIQFQATPCPKEPNKEMINDGASWTIISTDK
       .:::::::: .  .       ::::. :...::::.::::: :. ..::.. ::::.:..
CCDS63 ISQLHKCAFQFPGSPPGGGGTYLCLATEKVVQFQASPCPKEANRALLNDSSCWTIIGTES
        310       320       330       340       350       360      

         340       350       360       370       380       390     
pF1KB5 AEYTFYEGMGPVLAPVTPVPVVESLQLNGGGDVAMLELTGQNFTPNLRVWFGDVEAETMY
       .:..:  ... .: ::::::.. .:.:.:::::: ::: :.::  .:.::::::::::::
CCDS63 VEFSFSTSLACTLEPVTPVPLISTLELSGGGDVATLELHGENFHAGLKVWFGDVEAETMY
        370       380       390       400       410       420      

         400       410       420       430       440       450     
pF1KB5 RCGESMLCVVPDISAFREGWRWVRQPVQVPVTLVRNDGIIYSTSLTFTYTPEPGPRPHCS
          .:..:::::..::   :::.: :. .:..::: ::..: ....:::::: . ::   
CCDS63 S-PRSLVCVVPDVAAFCSDWRWLRAPITIPMSLVRADGLFYPSAFSFTYTPEYSVRPGHP
         430       440       450       460       470       480     

         460       470       480       490       500
pF1KB5 AAGAILRANSSQVPPNESNTNSEGSYTNASTNSTSVTSSTATVVS
                                                    
CCDS63 GVPEPATDADALLESIHQEFTRTNFHLFIQT              
         490       500       510                    

>>CCDS63284.1 RBPJL gene_id:11317|Hs108|chr20             (471 aa)
 initn: 1128 init1: 460 opt: 1425  Z-score: 1603.1  bits: 306.1 E(32554): 5.7e-83
Smith-Waterman score: 1425; 55.2% identity (77.4% similar) in 393 aa overlap (19-398:39-429)

                           10        20        30          40      
pF1KB5             MDHTEGSPAEEPPAHAPSPGKFGERPPPKRLT--REAMRNYLKERGDQ
                                     :: .  :  :.. :  : ..:  :... .:
CCDS63 PSVPPNPLTHLSLQDRSEMQLQSEADRRSLPGTW-TRSSPEHTTILRGGVRRCLQQQCEQ
       10        20        30        40         50        60       

         50        60        70        80        90       100      
pF1KB5 TVLILHAKVAQKSYGNEKRFFCPPPCVYLMGSGWKKKKEQMERDGCSEQESQPCAFIGIG
       :: :::::::::::::::::::::::::: : ::. :  : .    .:     :...:. 
CCDS63 TVRILHAKVAQKSYGNEKRFFCPPPCVYLSGPGWRVKPGQDQAHQAGETGPTVCGYMGLD
        70        80        90       100       110       120       

           110           120       130       140       150         
pF1KB5 N---SDQEMQQLNLE----GKNYCTAKTLYISDSDKRKHFMLSVKMFYGNSDDIGVFLSK
       .   :  : :.::.:    ....  ::::::::.:::::: : ...   .. ..:.: :.
CCDS63 SASGSATETQKLNFEQQPDSREFGCAKTLYISDADKRKHFRLVLRLVLRGGRELGTFHSR
       130       140       150       160       170       180       

     160       170       180       190       200       210         
pF1KB5 RIKVISKPSKKKQSLKNADLCIASGTKVALFNRLRSQTVSTRYLHVEGGNFHASSQQWGA
        ::::::::.:::::::.::::.::.::.::::::::::::::: :: : : ::..::.:
CCDS63 LIKVISKPSQKKQSLKNTDLCISSGSKVSLFNRLRSQTVSTRYLSVEDGAFVASARQWAA
       190       200       210       220       230       240       

     220       230       240       250       260       270         
pF1KB5 FFIHLLDDDESEGEEFTVRDGYIHYGQTVKLVCSVTGMALPRLIIRKVDKQTALLDADDP
       : .:: :   ..:. :  :.::..::. :.:::.:::..:: .::::: :: ::::.:.:
CCDS63 FTLHLADGHSAQGD-FPPREGYVRYGSLVQLVCTVTGITLPPMIIRKVAKQCALLDVDEP
       250       260        270       280       290       300      

     280       290           300       310       320       330     
pF1KB5 VSQLHKCAFYLKDTER----MYLCLSQERIIQFQATPCPKEPNKEMINDGASWTIISTDK
       .:::::::: .  .       ::::. :...::::.::::: :. ..::.. ::::.:..
CCDS63 ISQLHKCAFQFPGSPPGGGGTYLCLATEKVVQFQASPCPKEANRALLNDSSCWTIIGTES
        310       320       330       340       350       360      

         340       350       360       370       380       390     
pF1KB5 AEYTFYEGMGPVLAPVTPVPVVESLQLNGGGDVAMLELTGQNFTPNLRVWFGDVEAETMY
       .:..:  ... .: ::::::.. .:.:.:::::: ::: :.::  .:.::::::::::::
CCDS63 VEFSFSTSLACTLEPVTPVPLISTLELSGGGDVATLELHGENFHAGLKVWFGDVEAETMY
        370       380       390       400       410       420      

         400       410       420       430       440       450     
pF1KB5 RCGESMLCVVPDISAFREGWRWVRQPVQVPVTLVRNDGIIYSTSLTFTYTPEPGPRPHCS
       : :                                                         
CCDS63 RYGVEPAVPGVRGAGRGGLLQRLALAARSHHNPHEPGARRRALLP               
        430       440       450       460       470                

>>CCDS13349.1 RBPJL gene_id:11317|Hs108|chr20             (517 aa)
 initn: 1356 init1: 682 opt: 1381  Z-score: 1552.9  bits: 296.9 E(32554): 3.5e-80
Smith-Waterman score: 1653; 54.6% identity (77.9% similar) in 447 aa overlap (19-452:39-483)

                           10        20        30          40      
pF1KB5             MDHTEGSPAEEPPAHAPSPGKFGERPPPKRLT--REAMRNYLKERGDQ
                                     :: .  :  :.. :  : ..:  :... .:
CCDS13 PSVPPNPLTHLSLQDRSEMQLQSEADRRSLPGTW-TRSSPEHTTILRGGVRRCLQQQCEQ
       10        20        30        40         50        60       

         50        60        70        80        90       100      
pF1KB5 TVLILHAKVAQKSYGNEKRFFCPPPCVYLMGSGWKKKKEQMERDGCSEQESQPCAFIGIG
       :: :::::::::::::::::::::::::: : ::. :  : .    .:     :...:. 
CCDS13 TVRILHAKVAQKSYGNEKRFFCPPPCVYLSGPGWRVKPGQDQAHQAGETGPTVCGYMGLD
        70        80        90       100       110       120       

           110           120       130       140       150         
pF1KB5 N---SDQEMQQLNLE----GKNYCTAKTLYISDSDKRKHFMLSVKMFYGNSDDIGVFLSK
       .   :  : :.::.:    ....  ::::::::.:::::: : ...   .. ..:.: :.
CCDS13 SASGSATETQKLNFEQQPDSREFGCAKTLYISDADKRKHFRLVLRLVLRGGRELGTFHSR
       130       140       150       160       170       180       

     160       170       180       190       200       210         
pF1KB5 RIKVISKPSKKKQSLKNADLCIASGTKVALFNRLRSQTVSTRYLHVEGGNFHASSQQWGA
        ::::::::.:::::::.::::.::.::.::::::::::::::: :: : : ::..::.:
CCDS13 LIKVISKPSQKKQSLKNTDLCISSGSKVSLFNRLRSQTVSTRYLSVEDGAFVASARQWAA
       190       200       210       220       230       240       

     220       230       240       250       260       270         
pF1KB5 FFIHLLDDDESEGEEFTVRDGYIHYGQTVKLVCSVTGMALPRLIIRKVDKQTALLDADDP
       : .:: :   ..:. :  :.::..::. :.:::.:::..:: .::::: :: ::::.:.:
CCDS13 FTLHLADGHSAQGD-FPPREGYVRYGSLVQLVCTVTGITLPPMIIRKVAKQCALLDVDEP
       250       260        270       280       290       300      

     280       290           300       310       320       330     
pF1KB5 VSQLHKCAFYLKDTER----MYLCLSQERIIQFQATPCPKEPNKEMINDGASWTIISTDK
       .:::::::: .  .       ::::. :...::::.::::: :. ..::.. ::::.:..
CCDS13 ISQLHKCAFQFPGSPPGGGGTYLCLATEKVVQFQASPCPKEANRALLNDSSCWTIIGTES
        310       320       330       340       350       360      

         340       350       360       370       380       390     
pF1KB5 AEYTFYEGMGPVLAPVTPVPVVESLQLNGGGDVAMLELTGQNFTPNLRVWFGDVEAETMY
       .:..:  ... .: ::::::.. .:.:.:::::: ::: :.::  .:.::::::::::::
CCDS13 VEFSFSTSLACTLEPVTPVPLISTLELSGGGDVATLELHGENFHAGLKVWFGDVEAETMY
        370       380       390       400       410       420      

         400       410       420       430       440       450     
pF1KB5 RCGESMLCVVPDISAFREGWRWVRQPVQVPVTLVRNDGIIYSTSLTFTYTPEPGPRPHCS
       :  .:..:::::..::   :::.: :. .:..::: ::..: ....:::::: . ::   
CCDS13 RSPRSLVCVVPDVAAFCSDWRWLRAPITIPMSLVRADGLFYPSAFSFTYTPEYSVRPGHP
        430       440       450       460       470       480      

         460       470       480       490       500
pF1KB5 AAGAILRANSSQVPPNESNTNSEGSYTNASTNSTSVTSSTATVVS
                                                    
CCDS13 GVPEPATDADALLESIHQEFTRTNFHLFIQT              
        490       500       510                     




500 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sat Nov  5 15:29:17 2016 done: Sat Nov  5 15:29:17 2016
 Total Scan time:  3.190 Total Display time:  0.070

Function used was FASTA [36.3.4 Apr, 2011]
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