Result of FASTA (ccds) for pF1KB5891
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB5891, 498 aa
  1>>>pF1KB5891 498 - 498 aa - 498 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 16.3205+/-0.00127; mu= -28.6639+/- 0.077
 mean_var=857.7629+/-175.585, 0's: 0 Z-trim(117.8): 125  B-trim: 0 in 0/55
 Lambda= 0.043792
 statistics sampled from 18490 (18598) to 18490 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.811), E-opt: 0.2 (0.571), width:  16
 Scan time:  4.320

The best scores are:                                      opt bits E(32554)
CCDS304.1 WASF2 gene_id:10163|Hs108|chr1           ( 498) 3525 237.7 2.3e-62
CCDS55582.1 WASF2 gene_id:10163|Hs108|chr1         ( 281) 1841 131.0 1.6e-30
CCDS76626.1 WASF3 gene_id:10810|Hs108|chr13        ( 499) 1690 121.7 1.8e-27
CCDS9318.1 WASF3 gene_id:10810|Hs108|chr13         ( 502) 1590 115.4 1.5e-25
CCDS5080.1 WASF1 gene_id:8936|Hs108|chr6           ( 559) 1240 93.4 7.2e-19


>>CCDS304.1 WASF2 gene_id:10163|Hs108|chr1                (498 aa)
 initn: 3525 init1: 3525 opt: 3525  Z-score: 1233.1  bits: 237.7 E(32554): 2.3e-62
Smith-Waterman score: 3525; 100.0% identity (100.0% similar) in 498 aa overlap (1-498:1-498)

               10        20        30        40        50        60
pF1KB5 MPLVTRNIEPRHLCRQTLPSVRSELECVTNITLANVIRQLGSLSKYAEDIFGELFTQANT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS30 MPLVTRNIEPRHLCRQTLPSVRSELECVTNITLANVIRQLGSLSKYAEDIFGELFTQANT
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB5 FASRVSSLAERVDRLQVKVTQLDPKEEEVSLQGINTRKAFRSSTIQDQKLFDRNSLPVPV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS30 FASRVSSLAERVDRLQVKVTQLDPKEEEVSLQGINTRKAFRSSTIQDQKLFDRNSLPVPV
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB5 LETYNTCDTPPPLNNLTPYRDDGKEALKFYTDPSYFFDLWKEKMLQDTKDIMKEKRKHRK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS30 LETYNTCDTPPPLNNLTPYRDDGKEALKFYTDPSYFFDLWKEKMLQDTKDIMKEKRKHRK
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB5 EKKDNPNRGNVNPRKIKTRKEEWEKMKMGQEFVESKEKLGTSGYPPTLVYQNGSIGCVEN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS30 EKKDNPNRGNVNPRKIKTRKEEWEKMKMGQEFVESKEKLGTSGYPPTLVYQNGSIGCVEN
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB5 VDASSYPPPPQSDSASSPSPSFSEDNLPPPPAEFSYPVDNQRGSGLAGPKRSSVVSPSHP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS30 VDASSYPPPPQSDSASSPSPSFSEDNLPPPPAEFSYPVDNQRGSGLAGPKRSSVVSPSHP
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KB5 PPAPPLGSPPGPKPGFAPPPAPPPPPPPMIGIPPPPPPVGFGSPGTPPPPSPPSFPPHPD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS30 PPAPPLGSPPGPKPGFAPPPAPPPPPPPMIGIPPPPPPVGFGSPGTPPPPSPPSFPPHPD
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KB5 FAAPPPPPPPPAADYPTLPPPPLSQPTGGAPPPPPPPPPPGPPPPPFTGADGQPAIPPPL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS30 FAAPPPPPPPPAADYPTLPPPPLSQPTGGAPPPPPPPPPPGPPPPPFTGADGQPAIPPPL
              370       380       390       400       410       420

              430       440       450       460       470       480
pF1KB5 SDTTKPKSSLPAVSDARSDLLSAIRQGFQLRRVEEQREQEKRDVVGNDVATILSRRIAVE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS30 SDTTKPKSSLPAVSDARSDLLSAIRQGFQLRRVEEQREQEKRDVVGNDVATILSRRIAVE
              430       440       450       460       470       480

              490        
pF1KB5 YSDSEDDSSEFDEDDWSD
       ::::::::::::::::::
CCDS30 YSDSEDDSSEFDEDDWSD
              490        

>>CCDS55582.1 WASF2 gene_id:10163|Hs108|chr1              (281 aa)
 initn: 1841 init1: 1841 opt: 1841  Z-score: 661.3  bits: 131.0 E(32554): 1.6e-30
Smith-Waterman score: 1841; 99.3% identity (99.6% similar) in 276 aa overlap (1-276:1-276)

               10        20        30        40        50        60
pF1KB5 MPLVTRNIEPRHLCRQTLPSVRSELECVTNITLANVIRQLGSLSKYAEDIFGELFTQANT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 MPLVTRNIEPRHLCRQTLPSVRSELECVTNITLANVIRQLGSLSKYAEDIFGELFTQANT
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB5 FASRVSSLAERVDRLQVKVTQLDPKEEEVSLQGINTRKAFRSSTIQDQKLFDRNSLPVPV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 FASRVSSLAERVDRLQVKVTQLDPKEEEVSLQGINTRKAFRSSTIQDQKLFDRNSLPVPV
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB5 LETYNTCDTPPPLNNLTPYRDDGKEALKFYTDPSYFFDLWKEKMLQDTKDIMKEKRKHRK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 LETYNTCDTPPPLNNLTPYRDDGKEALKFYTDPSYFFDLWKEKMLQDTKDIMKEKRKHRK
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB5 EKKDNPNRGNVNPRKIKTRKEEWEKMKMGQEFVESKEKLGTSGYPPTLVYQNGSIGCVEN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 EKKDNPNRGNVNPRKIKTRKEEWEKMKMGQEFVESKEKLGTSGYPPTLVYQNGSIGCVEN
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB5 VDASSYPPPPQSDSASSPSPSFSEDNLPPPPAEFSYPVDNQRGSGLAGPKRSSVVSPSHP
       :::::::::::::::::::::::::::::::::: .                        
CCDS55 VDASSYPPPPQSDSASSPSPSFSEDNLPPPPAEFRFSAAQG                   
              250       260       270       280                    

              310       320       330       340       350       360
pF1KB5 PPAPPLGSPPGPKPGFAPPPAPPPPPPPMIGIPPPPPPVGFGSPGTPPPPSPPSFPPHPD

>>CCDS76626.1 WASF3 gene_id:10810|Hs108|chr13             (499 aa)
 initn: 1190 init1: 1190 opt: 1690  Z-score: 606.6  bits: 121.7 E(32554): 1.8e-27
Smith-Waterman score: 1690; 53.5% identity (71.5% similar) in 512 aa overlap (1-498:1-499)

               10         20        30        40        50         
pF1KB5 MPLVTRNIEPRHLCRQTLP-SVRSELECVTNITLANVIRQLGSLSKYAEDIFGELFTQAN
       :::: :::::::::: .:: .. :::::::: ::: .::::.::::.:::::::::..::
CCDS76 MPLVKRNIEPRHLCRGALPEGITSELECVTNSTLAAIIRQLSSLSKHAEDIFGELFNEAN
               10        20        30        40        50        60

      60        70        80        90       100       110         
pF1KB5 TFASRVSSLAERVDRLQVKVTQLDPKEEEVSLQGINTRKAFRSSTIQDQKLFDRNSLPVP
       .:  :..:: .:.::: :::::::   :::::: :: .:::.:::.:::.. ..::.: :
CCDS76 NFYIRANSLQDRIDRLAVKVTQLDSTVEEVSLQDINMKKAFKSSTVQDQQVVSKNSIPNP
               70        80        90       100       110       120

     120       130       140       150       160       170         
pF1KB5 VLETYNTCDTPPPLNNLTPYRDDGKEALKFYTDPSYFFDLWKEKMLQDTKDIMKEKRKHR
       : . ::  : ::::: ::::::: :..::::::::::::::::::::::.:  ::::...
CCDS76 VADIYNQSDKPPPLNILTPYRDDKKDGLKFYTDPSYFFDLWKEKMLQDTEDKRKEKRRQK
              130       140       150       160       170       180

     180        190        200       210       220       230       
pF1KB5 KEK-KDNPNRGN-VNPRKIKTRKEEWEKMKMGQEFVESKEKLGTSGYPPTLVYQNGSIGC
       .:: : ::::.. :: ::..:::::::. ::: ::. . .::  .:        .::   
CCDS76 REKHKLNPNRNQQVNVRKVRTRKEEWERRKMGIEFMSDAKKLEQAGSAKEDRVPSGS--H
              190       200       210       220       230          

       240       250        260       270        280       290     
pF1KB5 VENVDASSYPPPPQSDSASSP-SPSFSEDNLPPP-PAEFSYPVDNQRGSGLAGPKRSSVV
       . .:   :::  :. .   .: .::..  ..::  ::  :  ....     :. .. .. 
CCDS76 ASDVTDYSYPATPNHSLHPQPVTPSYAAGDVPPHGPA--SQAAEHEYRPPSASARHMALN
      240       250       260       270         280       290      

         300       310       320       330       340       350     
pF1KB5 SPSHPPPAPPLGSPPGPKPGFAPPPAPPPPPPPMIGIPPPPPPVGFGSPGTPPPPSPPSF
        :..::: ::  .: : .       :  :  :   :. :      ..  : :::: :: .
CCDS76 RPQQPPPPPPPQAPEGSQ-------ASAPMAPADYGMLPAQIIEYYNPSGPPPPPPPPVI
        300       310              320       330       340         

          360          370       380          390        400       
pF1KB5 PP-HPDFAAP---PPPPPPPAADYPTLPPPPLSQPTG---GAPPPP-PPPPPPGPPPPPF
       :  .  :..:   :  :: ::.   :   ::    ::    ::::: ::::::::: :  
CCDS76 PSAQTAFVSPLQMPMQPPFPASASSTHAAPPHPPSTGLLVTAPPPPGPPPPPPGPPGPG-
     350       360       370       380       390       400         

       410       420       430       440       450       460       
pF1KB5 TGADGQPAIPPPLSDTTKPKSSLPAVSDARSDLLSAIRQGFQLRRVEEQREQE-KRDVVG
       .. ...:   ::.... . . . : .::::::::.:::.:.::..:.:::::: ::. ::
CCDS76 SSLSSSPMHGPPVAEAKRQEPAQPPISDARSDLLAAIRMGIQLKKVQEQREQEAKREPVG
      410       420       430       440       450       460        

        470       480       490        
pF1KB5 NDVATILSRRIAVEYSDSEDDSSEFDEDDWSD
       ::::::::::::::::::.::: ::::.::::
CCDS76 NDVATILSRRIAVEYSDSDDDS-EFDENDWSD
      470       480       490          

>>CCDS9318.1 WASF3 gene_id:10810|Hs108|chr13              (502 aa)
 initn: 869 init1: 869 opt: 1590  Z-score: 572.4  bits: 115.4 E(32554): 1.5e-25
Smith-Waterman score: 1590; 50.6% identity (70.7% similar) in 516 aa overlap (1-498:1-502)

               10         20        30        40        50         
pF1KB5 MPLVTRNIEPRHLCRQTLP-SVRSELECVTNITLANVIRQLGSLSKYAEDIFGELFTQAN
       :::: :::::::::: .:: .. :::::::: ::: .::::.::::.:::::::::..::
CCDS93 MPLVKRNIEPRHLCRGALPEGITSELECVTNSTLAAIIRQLSSLSKHAEDIFGELFNEAN
               10        20        30        40        50        60

      60        70        80        90       100       110         
pF1KB5 TFASRVSSLAERVDRLQVKVTQLDPKEEEVSLQGINTRKAFRSSTIQDQKLFDRNSLPVP
       .:  :..:: .:.::: :::::::   :::::: :: .:::.:::.:::.. ..::.: :
CCDS93 NFYIRANSLQDRIDRLAVKVTQLDSTVEEVSLQDINMKKAFKSSTVQDQQVVSKNSIPNP
               70        80        90       100       110       120

     120       130       140       150       160       170         
pF1KB5 VLETYNTCDTPPPLNNLTPYRDDGKEALKFYTDPSYFFDLWKEKMLQDTKDIMKEKRKHR
       : . ::  : ::::: ::::::: :..::::::::::::::::::::::.:  ::::...
CCDS93 VADIYNQSDKPPPLNILTPYRDDKKDGLKFYTDPSYFFDLWKEKMLQDTEDKRKEKRRQK
              130       140       150       160       170       180

     180        190       200       210       220       230        
pF1KB5 KEKK-DNPNRGNVNPRKIKTRKEEWEKMKMGQEFVESKEKLGTSGYPPTLVYQNGSIG--
       ..:. :. .:   . :: ..:..::. : . .:. .  ..:. : :  .   ..::..  
CCDS93 EQKRIDGTTREVKKVRKARNRRQEWNMMAYDKEL-RPDNRLSQSVYHGA--SSEGSLSPD
              190       200       210        220         230       

           240       250        260       270        280       290 
pF1KB5 ---CVENVDASSYPPPPQSDSASSP-SPSFSEDNLPPP-PAEFSYPVDNQRGSGLAGPKR
           . .:   :::  :. .   .: .::..  ..::  ::  :  ....     :. ..
CCDS93 TRSHASDVTDYSYPATPNHSLHPQPVTPSYAAGDVPPHGPA--SQAAEHEYRPPSASARH
       240       250       260       270         280       290     

             300       310       320       330       340       350 
pF1KB5 SSVVSPSHPPPAPPLGSPPGPKPGFAPPPAPPPPPPPMIGIPPPPPPVGFGSPGTPPPPS
        ..  :..::: ::  .: : .       :  :  :   :. :      ..  : :::: 
CCDS93 MALNRPQQPPPPPPPQAPEGSQ-------ASAPMAPADYGMLPAQIIEYYNPSGPPPPPP
         300       310              320       330       340        

              360          370       380          390        400   
pF1KB5 PPSFPP-HPDFAAP---PPPPPPPAADYPTLPPPPLSQPTG---GAPPPP-PPPPPPGPP
       :: .:  .  :..:   :  :: ::.   :   ::    ::    ::::: :::::::::
CCDS93 PPVIPSAQTAFVSPLQMPMQPPFPASASSTHAAPPHPPSTGLLVTAPPPPGPPPPPPGPP
      350       360       370       380       390       400        

           410       420       430       440       450       460   
pF1KB5 PPPFTGADGQPAIPPPLSDTTKPKSSLPAVSDARSDLLSAIRQGFQLRRVEEQREQE-KR
        :  .. ...:   ::.... . . . : .::::::::.:::.:.::..:.:::::: ::
CCDS93 GPG-SSLSSSPMHGPPVAEAKRQEPAQPPISDARSDLLAAIRMGIQLKKVQEQREQEAKR
      410        420       430       440       450       460       

            470       480       490        
pF1KB5 DVVGNDVATILSRRIAVEYSDSEDDSSEFDEDDWSD
       . ::::::::::::::::::::.::: ::::.::::
CCDS93 EPVGNDVATILSRRIAVEYSDSDDDS-EFDENDWSD
       470       480       490        500  

>>CCDS5080.1 WASF1 gene_id:8936|Hs108|chr6                (559 aa)
 initn: 1140 init1: 954 opt: 1240  Z-score: 452.3  bits: 93.4 E(32554): 7.2e-19
Smith-Waterman score: 1490; 48.6% identity (65.9% similar) in 545 aa overlap (1-469:1-531)

               10         20        30        40        50         
pF1KB5 MPLVTRNIEPRHLCRQTLP-SVRSELECVTNITLANVIRQLGSLSKYAEDIFGELFTQAN
       :::: :::.:::::. .:: ....::::::::.:::.::::.::::::::::::::..:.
CCDS50 MPLVKRNIDPRHLCHTALPRGIKNELECVTNISLANIIRQLSSLSKYAEDIFGELFNEAH
               10        20        30        40        50        60

      60        70        80        90       100       110         
pF1KB5 TFASRVSSLAERVDRLQVKVTQLDPKEEEVSLQGINTRKAFRSSTIQDQKLFDRNSLPVP
       .:. ::.:: ::::::.:.::::::::::.::: :. ::::::::::::.::::..::.:
CCDS50 SFSFRVNSLQERVDRLSVSVTQLDPKEEELSLQDITMRKAFRSSTIQDQQLFDRKTLPIP
               70        80        90       100       110       120

     120       130       140       150       160       170         
pF1KB5 VLETYNTCDTPPPLNNLTPYRDDGKEALKFYTDPSYFFDLWKEKMLQDTKDIMKEKRKHR
       . :::..:. ::::: ::::::::::.:::::.::::::::::::::::.:  :::::..
CCDS50 LQETYDVCEQPPPLNILTPYRDDGKEGLKFYTNPSYFFDLWKEKMLQDTEDKRKEKRKQK
              130       140       150       160       170       180

     180       190       200       210                220          
pF1KB5 KEKKDNPNRGNVNPRKIKTRKEEWEKMKMGQEFVESKEKL---------GTSGY----PP
       ... : :.. .  ::  . :..::.:. .: :..:.  .:         : ...    : 
CCDS50 QKNLDRPHEPEKVPRAPHDRRREWQKLAQGPELAEDDANLLHKHIEVANGPASHFETRPQ
              190       200       210       220       230       240

         230                      240       250       260       270
pF1KB5 TLV-YQNGSIGCV---------------ENVDASSYPPPPQSDSASSPSPSFSEDNLPPP
       : : ...:: .                 : : .  . :::       : :  .  .  : 
CCDS50 TYVDHMDGSYSLSALPFSQMSELLTRAEERVLVRPHEPPP-------PPPMHGAGDAKPI
              250       260       270       280              290   

                 280       290        300       310       320      
pF1KB5 PAEFSYP---VDNQRGSGLAGPKRSSV-VSPSHPPPAPPLGSPPGPKPGFAPPPAPPPPP
       :. .:     ..:.  :  .:  :. : :::. ::: ::: :  . .   :   . ::::
CCDS50 PTCISSATGLIENRPQSPATG--RTPVFVSPTPPPPPPPLPSALSTSSLRASMTSTPPPP
           300       310         320       330       340       350 

         330       340       350       360              370        
pF1KB5 -PPMIGIPPPPPPVGFGSPGTPPPPSPPSFPPHPDFAAPPP--PP-----PPPAADYP--
        ::    ::::: ... .:..::::.: .. :     ::::  ::     :: :   :  
CCDS50 VPP----PPPPPATALQAPAVPPPPAPLQIAPGVLHPAPPPIAPPLVQPSPPVARAAPVC
                 360       370       380       390       400       

         380        390         400                         410    
pF1KB5 -TLPPPPLSQ-PTGGAPPPPPPPP--PPG--------------PP----PPPFTGADGQ-
        :.:  :: :  . : ::::::::  :::              ::    : : : : :  
CCDS50 ETVPVHPLPQGEVQGLPPPPPPPPLPPPGIRPSSPVTVTALAHPPSGLHPTPST-APGPH
       410       420       430       440       450       460       

                   420       430       440       450       460     
pF1KB5 -PAIPP-------PLSDTTKPKSSLPAVSDARSDLLSAIRQGFQLRRVEEQREQE-KRDV
        : .::       : :.  .  :.::..::::: :: :::.:.:::.:::::::: :.. 
CCDS50 VPLMPPSPPSQVIPASEPKRHPSTLPVISDARSVLLEAIRKGIQLRKVEEQREQEAKHER
        470       480       490       500       510       520      

          470       480       490        
pF1KB5 VGNDVATILSRRIAVEYSDSEDDSSEFDEDDWSD
       . :::                             
CCDS50 IENDVATILSRRIAVEYSDSEDDSEFDEVDWLE 
        530       540       550          




498 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sat Nov  5 15:28:39 2016 done: Sat Nov  5 15:28:40 2016
 Total Scan time:  4.320 Total Display time:  0.020

Function used was FASTA [36.3.4 Apr, 2011]
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