Result of FASTA (omim) for pF1KB5825
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB5825, 125 aa
  1>>>pF1KB5825 125 - 125 aa - 125 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 4.3194+/-0.000338; mu= 16.9086+/- 0.021
 mean_var=98.1454+/-24.186, 0's: 0 Z-trim(115.3): 130  B-trim: 1550 in 1/51
 Lambda= 0.129461
 statistics sampled from 25478 (25641) to 25478 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.694), E-opt: 0.2 (0.301), width:  16
 Scan time:  4.150

The best scores are:                                      opt bits E(85289)
NP_057131 (OMIM: 607835) splicing factor 3B subuni ( 125)  833 165.0 2.8e-41
NP_001177938 (OMIM: 605221) serine/arginine-rich s ( 165)  166 40.6   0.001
NP_001287865 (OMIM: 605221) serine/arginine-rich s ( 172)  166 40.7  0.0011
NP_001177935 (OMIM: 605221) serine/arginine-rich s ( 173)  166 40.7  0.0011
NP_001177936 (OMIM: 605221) serine/arginine-rich s ( 182)  166 40.7  0.0011
NP_006616 (OMIM: 605221) serine/arginine-rich spli ( 183)  166 40.7  0.0011
NP_001287866 (OMIM: 605221) serine/arginine-rich s ( 217)  166 40.8  0.0012
NP_001177934 (OMIM: 605221) serine/arginine-rich s ( 261)  166 40.9  0.0013
NP_473357 (OMIM: 605221) serine/arginine-rich spli ( 262)  166 40.9  0.0013
XP_005250918 (OMIM: 604679) PREDICTED: polyadenyla ( 636)  156 39.6   0.008
NP_002559 (OMIM: 604679) polyadenylate-binding pro ( 636)  156 39.6   0.008


>>NP_057131 (OMIM: 607835) splicing factor 3B subunit 6   (125 aa)
 initn: 833 init1: 833 opt: 833  Z-score: 862.1  bits: 165.0 E(85289): 2.8e-41
Smith-Waterman score: 833; 100.0% identity (100.0% similar) in 125 aa overlap (1-125:1-125)

               10        20        30        40        50        60
pF1KB5 MAMQAAKRANIRLPPEVNRILYIRNLPYKITAEEMYDIFGKYGPIRQIRVGNTPETRGTA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_057 MAMQAAKRANIRLPPEVNRILYIRNLPYKITAEEMYDIFGKYGPIRQIRVGNTPETRGTA
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB5 YVVYEDIFDAKNACDHLSGFNVCNRYLVVLYYNANRAFQKMDTKKKEEQLKLLKEKYGIN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_057 YVVYEDIFDAKNACDHLSGFNVCNRYLVVLYYNANRAFQKMDTKKKEEQLKLLKEKYGIN
               70        80        90       100       110       120

            
pF1KB5 TDPPK
       :::::
NP_057 TDPPK
            

>>NP_001177938 (OMIM: 605221) serine/arginine-rich splic  (165 aa)
 initn: 141 init1:  84 opt: 166  Z-score: 187.6  bits: 40.6 E(85289): 0.001
Smith-Waterman score: 166; 33.7% identity (61.6% similar) in 86 aa overlap (14-96:7-90)

               10        20        30        40        50          
pF1KB5 MAMQAAKRANIRLPPEVNRILYIRNLPYKITAEEMYDIFGKYGPIRQIRVG---NTPETR
                    ::  :  :..::.     .:..   ::.:::: .. :     : . :
NP_001        MSRYLRPP--NTSLFVRNVADDTRSEDLRREFGRYGPIVDVYVPLDFYTRRPR
                        10        20        30        40        50 

        60        70        80        90       100       110       
pF1KB5 GTAYVVYEDIFDAKNACDHLSGFNVCNRYLVVLYYNANRAFQKMDTKKKEEQLKLLKEKY
       : ::: .::. ::..:  .:.   .:.: . . . ...:                     
NP_001 GFAYVQFEDVRDAEDALHNLDRKWICGRQIEIQFAQGDRKTPNQMKAKEGRNVYSSSRYD
              60        70        80        90       100       110 

       120                                                   
pF1KB5 GINTDPPK                                              
                                                             
NP_001 DYDRYRRSRSRSYERRRSRSRSFDYNYRRSYSPRKPNCSWNTQYSSAYYTSRKI
             120       130       140       150       160     

>>NP_001287865 (OMIM: 605221) serine/arginine-rich splic  (172 aa)
 initn: 141 init1:  84 opt: 166  Z-score: 187.4  bits: 40.7 E(85289): 0.0011
Smith-Waterman score: 166; 33.7% identity (61.6% similar) in 86 aa overlap (14-96:7-90)

               10        20        30        40        50          
pF1KB5 MAMQAAKRANIRLPPEVNRILYIRNLPYKITAEEMYDIFGKYGPIRQIRVG---NTPETR
                    ::  :  :..::.     .:..   ::.:::: .. :     : . :
NP_001        MSRYLRPP--NTSLFVRNVADDTRSEDLRREFGRYGPIVDVYVPLDFYTRRPR
                        10        20        30        40        50 

        60        70        80        90       100       110       
pF1KB5 GTAYVVYEDIFDAKNACDHLSGFNVCNRYLVVLYYNANRAFQKMDTKKKEEQLKLLKEKY
       : ::: .::. ::..:  .:.   .:.: . . . ...:                     
NP_001 GFAYVQFEDVRDAEDALHNLDRKWICGRQIEIQFAQGDRKTPNQMKAKEGRNVYSSSRYD
              60        70        80        90       100       110 

       120                                                         
pF1KB5 GINTDPPK                                                    
                                                                   
NP_001 DYDRYRRSRSRSYERRRSRSRSFDYNYRRSYSPRNRPTGRPRRSRSHSDNDSQVSKKKNE
             120       130       140       150       160       170 

>>NP_001177935 (OMIM: 605221) serine/arginine-rich splic  (173 aa)
 initn: 141 init1:  84 opt: 166  Z-score: 187.4  bits: 40.7 E(85289): 0.0011
Smith-Waterman score: 166; 33.7% identity (61.6% similar) in 86 aa overlap (14-96:7-90)

               10        20        30        40        50          
pF1KB5 MAMQAAKRANIRLPPEVNRILYIRNLPYKITAEEMYDIFGKYGPIRQIRVG---NTPETR
                    ::  :  :..::.     .:..   ::.:::: .. :     : . :
NP_001        MSRYLRPP--NTSLFVRNVADDTRSEDLRREFGRYGPIVDVYVPLDFYTRRPR
                        10        20        30        40        50 

        60        70        80        90       100       110       
pF1KB5 GTAYVVYEDIFDAKNACDHLSGFNVCNRYLVVLYYNANRAFQKMDTKKKEEQLKLLKEKY
       : ::: .::. ::..:  .:.   .:.: . . . ...:                     
NP_001 GFAYVQFEDVRDAEDALHNLDRKWICGRQIEIQFAQGDRKTPNQMKAKEGRNVYSSSRYD
              60        70        80        90       100       110 

       120                                                         
pF1KB5 GINTDPPK                                                    
                                                                   
NP_001 DYDRYRRSRSRSYERRRSRSRSFDYNYRRSYSPRNSRPTGRPRRSRSHSDNDSQVSKKKN
             120       130       140       150       160       170 

>>NP_001177936 (OMIM: 605221) serine/arginine-rich splic  (182 aa)
 initn: 141 init1:  84 opt: 166  Z-score: 187.2  bits: 40.7 E(85289): 0.0011
Smith-Waterman score: 166; 33.7% identity (61.6% similar) in 86 aa overlap (14-96:7-90)

               10        20        30        40        50          
pF1KB5 MAMQAAKRANIRLPPEVNRILYIRNLPYKITAEEMYDIFGKYGPIRQIRVG---NTPETR
                    ::  :  :..::.     .:..   ::.:::: .. :     : . :
NP_001        MSRYLRPP--NTSLFVRNVADDTRSEDLRREFGRYGPIVDVYVPLDFYTRRPR
                        10        20        30        40        50 

        60        70        80        90       100       110       
pF1KB5 GTAYVVYEDIFDAKNACDHLSGFNVCNRYLVVLYYNANRAFQKMDTKKKEEQLKLLKEKY
       : ::: .::. ::..:  .:.   .:.: . . . ...:                     
NP_001 GFAYVQFEDVRDAEDALHNLDRKWICGRQIEIQFAQGDRKTPNQMKAKEGRNVYSSSRYD
              60        70        80        90       100       110 

       120                                                         
pF1KB5 GINTDPPK                                                    
                                                                   
NP_001 DYDRYRRSRSRSYERRRSRSRSFDYNYRRSYSPRNRPTGRPRRSRSHSDNDRPNCSWNTQ
             120       130       140       150       160       170 

>>NP_006616 (OMIM: 605221) serine/arginine-rich splicing  (183 aa)
 initn: 141 init1:  84 opt: 166  Z-score: 187.2  bits: 40.7 E(85289): 0.0011
Smith-Waterman score: 166; 33.7% identity (61.6% similar) in 86 aa overlap (14-96:7-90)

               10        20        30        40        50          
pF1KB5 MAMQAAKRANIRLPPEVNRILYIRNLPYKITAEEMYDIFGKYGPIRQIRVG---NTPETR
                    ::  :  :..::.     .:..   ::.:::: .. :     : . :
NP_006        MSRYLRPP--NTSLFVRNVADDTRSEDLRREFGRYGPIVDVYVPLDFYTRRPR
                        10        20        30        40        50 

        60        70        80        90       100       110       
pF1KB5 GTAYVVYEDIFDAKNACDHLSGFNVCNRYLVVLYYNANRAFQKMDTKKKEEQLKLLKEKY
       : ::: .::. ::..:  .:.   .:.: . . . ...:                     
NP_006 GFAYVQFEDVRDAEDALHNLDRKWICGRQIEIQFAQGDRKTPNQMKAKEGRNVYSSSRYD
              60        70        80        90       100       110 

       120                                                         
pF1KB5 GINTDPPK                                                    
                                                                   
NP_006 DYDRYRRSRSRSYERRRSRSRSFDYNYRRSYSPRNSRPTGRPRRSRSHSDNDRPNCSWNT
             120       130       140       150       160       170 

>>NP_001287866 (OMIM: 605221) serine/arginine-rich splic  (217 aa)
 initn: 141 init1:  84 opt: 166  Z-score: 186.4  bits: 40.8 E(85289): 0.0012
Smith-Waterman score: 166; 33.7% identity (61.6% similar) in 86 aa overlap (14-96:7-90)

               10        20        30        40        50          
pF1KB5 MAMQAAKRANIRLPPEVNRILYIRNLPYKITAEEMYDIFGKYGPIRQIRVG---NTPETR
                    ::  :  :..::.     .:..   ::.:::: .. :     : . :
NP_001        MSRYLRPP--NTSLFVRNVADDTRSEDLRREFGRYGPIVDVYVPLDFYTRRPR
                        10        20        30        40        50 

        60        70        80        90       100       110       
pF1KB5 GTAYVVYEDIFDAKNACDHLSGFNVCNRYLVVLYYNANRAFQKMDTKKKEEQLKLLKEKY
       : ::: .::. ::..:  .:.   .:.: . . . ...:                     
NP_001 GFAYVQFEDVRDAEDALHNLDRKWICGRQIEIQFAQGDRKTPNQMKAKEGRNVYSSSRYD
              60        70        80        90       100       110 

       120                                                         
pF1KB5 GINTDPPK                                                    
                                                                   
NP_001 DYDRYRRSRSRSYERRRSRSRSFDYNYRRSYSPRNSRPTGRPRRSRSHSDNDRFKHRNRS
             120       130       140       150       160       170 

>>NP_001177934 (OMIM: 605221) serine/arginine-rich splic  (261 aa)
 initn: 157 init1:  84 opt: 166  Z-score: 185.6  bits: 40.9 E(85289): 0.0013
Smith-Waterman score: 166; 33.7% identity (61.6% similar) in 86 aa overlap (14-96:7-90)

               10        20        30        40        50          
pF1KB5 MAMQAAKRANIRLPPEVNRILYIRNLPYKITAEEMYDIFGKYGPIRQIRVG---NTPETR
                    ::  :  :..::.     .:..   ::.:::: .. :     : . :
NP_001        MSRYLRPP--NTSLFVRNVADDTRSEDLRREFGRYGPIVDVYVPLDFYTRRPR
                        10        20        30        40        50 

        60        70        80        90       100       110       
pF1KB5 GTAYVVYEDIFDAKNACDHLSGFNVCNRYLVVLYYNANRAFQKMDTKKKEEQLKLLKEKY
       : ::: .::. ::..:  .:.   .:.: . . . ...:                     
NP_001 GFAYVQFEDVRDAEDALHNLDRKWICGRQIEIQFAQGDRKTPNQMKAKEGRNVYSSSRYD
              60        70        80        90       100       110 

       120                                                         
pF1KB5 GINTDPPK                                                    
                                                                   
NP_001 DYDRYRRSRSRSYERRRSRSRSFDYNYRRSYSPRNRPTGRPRRSRSHSDNDRFKHRNRSF
             120       130       140       150       160       170 

>>NP_473357 (OMIM: 605221) serine/arginine-rich splicing  (262 aa)
 initn: 157 init1:  84 opt: 166  Z-score: 185.6  bits: 40.9 E(85289): 0.0013
Smith-Waterman score: 166; 33.7% identity (61.6% similar) in 86 aa overlap (14-96:7-90)

               10        20        30        40        50          
pF1KB5 MAMQAAKRANIRLPPEVNRILYIRNLPYKITAEEMYDIFGKYGPIRQIRVG---NTPETR
                    ::  :  :..::.     .:..   ::.:::: .. :     : . :
NP_473        MSRYLRPP--NTSLFVRNVADDTRSEDLRREFGRYGPIVDVYVPLDFYTRRPR
                        10        20        30        40        50 

        60        70        80        90       100       110       
pF1KB5 GTAYVVYEDIFDAKNACDHLSGFNVCNRYLVVLYYNANRAFQKMDTKKKEEQLKLLKEKY
       : ::: .::. ::..:  .:.   .:.: . . . ...:                     
NP_473 GFAYVQFEDVRDAEDALHNLDRKWICGRQIEIQFAQGDRKTPNQMKAKEGRNVYSSSRYD
              60        70        80        90       100       110 

       120                                                         
pF1KB5 GINTDPPK                                                    
                                                                   
NP_473 DYDRYRRSRSRSYERRRSRSRSFDYNYRRSYSPRNSRPTGRPRRSRSHSDNDRFKHRNRS
             120       130       140       150       160       170 

>>XP_005250918 (OMIM: 604679) PREDICTED: polyadenylate-b  (636 aa)
 initn: 110 init1:  87 opt: 156  Z-score: 171.6  bits: 39.6 E(85289): 0.008
Smith-Waterman score: 156; 26.9% identity (65.4% similar) in 104 aa overlap (21-120:193-295)

                         10        20        30        40        50
pF1KB5           MAMQAAKRANIRLPPEVNRILYIRNLPYKITAEEMYDIFGKYGPIRQIRV
                                     .::.:.   .  :.. :.:::.::  ...:
XP_005 LNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKDLFGKFGPALSVKV
            170       180       190       200       210       220  

                 60        70        80        90       100        
pF1KB5 --GNTPETRGTAYVVYEDIFDAKNACDHLSGFNVCNRYLVVLYYNANRAFQKMDTKKKEE
          .. ...: ..: .:   ::..: :...: .. .. . :     ... .. . :.: :
XP_005 MTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYV-GRAQKKVERQTELKRKFE
            230       240       250       260        270       280 

      110         120                                              
pF1KB5 QLKLLK-EKY-GINTDPPK                                         
       :.:  .  .: :.:                                              
XP_005 QMKQDRITRYQGVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMMEGGRSKGFGFVCFS
             290       300       310       320       330       340 




125 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sat Nov  5 15:01:46 2016 done: Sat Nov  5 15:01:46 2016
 Total Scan time:  4.150 Total Display time: -0.010

Function used was FASTA [36.3.4 Apr, 2011]
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