Result of FASTA (omim) for
pF1KB7927
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB7927, 200 aa
1>>>pF1KB7927 200 - 200 aa - 200 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 4.8578+/-0.000312; mu= 16.5197+/- 0.020
mean_var=67.4803+/-13.548, 0's: 0 Z-trim(116.6): 136 B-trim: 0 in 0/53
Lambda= 0.156130
statistics sampled from 27738 (27876) to 27738 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.707), E-opt: 0.2 (0.327), width: 16
Scan time: 6.190
The best scores are: opt bits E(85289)
NP_005330 (OMIM: 602846) ubiquitin-conjugating enz ( 200) 1310 303.3 1.7e-82
NP_001104582 (OMIM: 602846) ubiquitin-conjugating ( 157) 873 204.8 6.1e-53
NP_001104583 (OMIM: 602846) ubiquitin-conjugating ( 149) 836 196.4 1.9e-50
NP_001299576 (OMIM: 602846) ubiquitin-conjugating ( 97) 622 148.1 4.4e-36
NP_001299577 (OMIM: 602846) ubiquitin-conjugating ( 97) 622 148.1 4.4e-36
NP_001299575 (OMIM: 602846) ubiquitin-conjugating ( 139) 477 115.5 3.9e-26
NP_003339 (OMIM: 603679) ubiquitin-conjugating enz ( 152) 444 108.1 7.3e-24
NP_003329 (OMIM: 602961) ubiquitin-conjugating enz ( 147) 405 99.3 3.1e-21
NP_003330 (OMIM: 602962) ubiquitin-conjugating enz ( 147) 405 99.3 3.1e-21
NP_871621 (OMIM: 602963) ubiquitin-conjugating enz ( 148) 400 98.2 6.9e-21
NP_003331 (OMIM: 602963) ubiquitin-conjugating enz ( 147) 397 97.5 1.1e-20
NP_871615 (OMIM: 602963) ubiquitin-conjugating enz ( 147) 397 97.5 1.1e-20
NP_871619 (OMIM: 602963) ubiquitin-conjugating enz ( 147) 397 97.5 1.1e-20
NP_871618 (OMIM: 602963) ubiquitin-conjugating enz ( 147) 397 97.5 1.1e-20
NP_871617 (OMIM: 602963) ubiquitin-conjugating enz ( 147) 397 97.5 1.1e-20
NP_871616 (OMIM: 602963) ubiquitin-conjugating enz ( 147) 397 97.5 1.1e-20
NP_871620 (OMIM: 602963) ubiquitin-conjugating enz ( 147) 397 97.5 1.1e-20
XP_016865309 (OMIM: 602962) PREDICTED: ubiquitin-c ( 173) 387 95.3 5.9e-20
NP_862821 (OMIM: 602962) ubiquitin-conjugating enz ( 118) 383 94.3 8.2e-20
XP_016872098 (OMIM: 602961) PREDICTED: ubiquitin-c ( 110) 382 94.1 9.1e-20
NP_871622 (OMIM: 602963) ubiquitin-conjugating enz ( 149) 380 93.7 1.6e-19
NP_054895 (OMIM: 610538,616435) ubiquitin-conjugat ( 197) 381 94.0 1.7e-19
NP_001287724 (OMIM: 602963) ubiquitin-conjugating ( 118) 375 92.5 2.9e-19
XP_016864073 (OMIM: 602963) PREDICTED: ubiquitin-c ( 118) 375 92.5 2.9e-19
NP_001191809 (OMIM: 602961) ubiquitin-conjugating ( 109) 364 90.0 1.5e-18
NP_689866 (OMIM: 602163) ubiquitin-conjugating enz ( 201) 366 90.7 1.8e-18
XP_005265489 (OMIM: 602163) PREDICTED: ubiquitin-c ( 201) 366 90.7 1.8e-18
NP_001297255 (OMIM: 610538,616435) ubiquitin-conju ( 167) 364 90.1 2.1e-18
XP_005246301 (OMIM: 604151) PREDICTED: ubiquitin-c ( 207) 365 90.4 2.1e-18
NP_001265484 (OMIM: 604151) ubiquitin-conjugating ( 207) 365 90.4 2.1e-18
NP_001265483 (OMIM: 604151) ubiquitin-conjugating ( 207) 365 90.4 2.1e-18
NP_872619 (OMIM: 604151) ubiquitin-conjugating enz ( 207) 365 90.4 2.1e-18
NP_006348 (OMIM: 604151) ubiquitin-conjugating enz ( 207) 365 90.4 2.1e-18
NP_003332 (OMIM: 602916) ubiquitin-conjugating enz ( 193) 363 90.0 2.7e-18
NP_001189405 (OMIM: 602916) ubiquitin-conjugating ( 160) 359 89.0 4.4e-18
NP_872607 (OMIM: 602916) ubiquitin-conjugating enz ( 176) 358 88.8 5.5e-18
NP_055316 (OMIM: 610309) ubiquitin-conjugating enz ( 222) 320 80.3 2.5e-15
NP_003327 (OMIM: 300860,312180) ubiquitin-conjugat ( 152) 317 79.5 3e-15
NP_003328 (OMIM: 179095) ubiquitin-conjugating enz ( 152) 316 79.3 3.5e-15
NP_003335 (OMIM: 601082) ubiquitin-conjugating enz ( 183) 315 79.1 4.7e-15
XP_005265490 (OMIM: 602163) PREDICTED: ubiquitin-c ( 189) 314 78.9 5.6e-15
NP_008950 (OMIM: 605574) ubiquitin-conjugating enz ( 179) 309 77.8 1.2e-14
NP_861517 (OMIM: 605574) ubiquitin-conjugating enz ( 140) 307 77.2 1.3e-14
NP_001269090 (OMIM: 300860,312180) ubiquitin-conju ( 119) 301 75.8 3e-14
NP_003338 (OMIM: 603721) ubiquitin-conjugating enz ( 154) 296 74.8 8e-14
XP_005265488 (OMIM: 602916) PREDICTED: ubiquitin-c ( 167) 296 74.8 8.5e-14
NP_861516 (OMIM: 605574) ubiquitin-conjugating enz ( 150) 286 72.5 3.7e-13
NP_001243284 (OMIM: 603721) ubiquitin-conjugating ( 212) 282 71.8 9.1e-13
XP_016879129 (OMIM: 601661) PREDICTED: SUMO-conjug ( 158) 264 67.6 1.2e-11
NP_003336 (OMIM: 601661) SUMO-conjugating enzyme U ( 158) 264 67.6 1.2e-11
>>NP_005330 (OMIM: 602846) ubiquitin-conjugating enzyme (200 aa)
initn: 1310 init1: 1310 opt: 1310 Z-score: 1602.0 bits: 303.3 E(85289): 1.7e-82
Smith-Waterman score: 1310; 100.0% identity (100.0% similar) in 200 aa overlap (1-200:1-200)
10 20 30 40 50 60
pF1KB7 MANIAVQRIKREFKEVLKSEETSKNQIKVDLVDENFTELRGEIAGPPDTPYEGGRYQLEI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_005 MANIAVQRIKREFKEVLKSEETSKNQIKVDLVDENFTELRGEIAGPPDTPYEGGRYQLEI
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB7 KIPETYPFNPPKVRFITKIWHPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQALLAAA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_005 KIPETYPFNPPKVRFITKIWHPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQALLAAA
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB7 EPDDPQDAVVANQYKQNPEMFKQTARLWAHVYAGAPVSSPEYTKKIENLCAMGFDRNAVI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_005 EPDDPQDAVVANQYKQNPEMFKQTARLWAHVYAGAPVSSPEYTKKIENLCAMGFDRNAVI
130 140 150 160 170 180
190 200
pF1KB7 VALSSKSWDVETATELLLSN
::::::::::::::::::::
NP_005 VALSSKSWDVETATELLLSN
190 200
>>NP_001104582 (OMIM: 602846) ubiquitin-conjugating enzy (157 aa)
initn: 870 init1: 870 opt: 873 Z-score: 1071.4 bits: 204.8 E(85289): 6.1e-53
Smith-Waterman score: 914; 78.5% identity (78.5% similar) in 200 aa overlap (1-200:1-157)
10 20 30 40 50 60
pF1KB7 MANIAVQRIKREFKEVLKSEETSKNQIKVDLVDENFTELRGEIAGPPDTPYEGGRYQLEI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MANIAVQRIKREFKEVLKSEETSKNQIKVDLVDENFTELRGEIAGPPDTPYEGGRYQLEI
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB7 KIPETYPFNPPKVRFITKIWHPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQALLAAA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 KIPETYPFNPPKVRFITKIWHPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQALLAAA
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB7 EPDDPQDAVVANQYKQNPEMFKQTARLWAHVYAGAPVSSPEYTKKIENLCAMGFDRNAVI
::::::::::::: ::::
NP_001 EPDDPQDAVVANQ-------------------------------------------NAVI
130
190 200
pF1KB7 VALSSKSWDVETATELLLSN
::::::::::::::::::::
NP_001 VALSSKSWDVETATELLLSN
140 150
>>NP_001104583 (OMIM: 602846) ubiquitin-conjugating enzy (149 aa)
initn: 836 init1: 836 opt: 836 Z-score: 1026.7 bits: 196.4 E(85289): 1.9e-50
Smith-Waterman score: 848; 74.5% identity (74.5% similar) in 200 aa overlap (1-200:1-149)
10 20 30 40 50 60
pF1KB7 MANIAVQRIKREFKEVLKSEETSKNQIKVDLVDENFTELRGEIAGPPDTPYEGGRYQLEI
:::::::::::::::::::::
NP_001 MANIAVQRIKREFKEVLKSEE---------------------------------------
10 20
70 80 90 100 110 120
pF1KB7 KIPETYPFNPPKVRFITKIWHPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQALLAAA
::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 ------------VRFITKIWHPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQALLAAA
30 40 50 60
130 140 150 160 170 180
pF1KB7 EPDDPQDAVVANQYKQNPEMFKQTARLWAHVYAGAPVSSPEYTKKIENLCAMGFDRNAVI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 EPDDPQDAVVANQYKQNPEMFKQTARLWAHVYAGAPVSSPEYTKKIENLCAMGFDRNAVI
70 80 90 100 110 120
190 200
pF1KB7 VALSSKSWDVETATELLLSN
::::::::::::::::::::
NP_001 VALSSKSWDVETATELLLSN
130 140
>>NP_001299576 (OMIM: 602846) ubiquitin-conjugating enzy (97 aa)
initn: 622 init1: 622 opt: 622 Z-score: 768.7 bits: 148.1 E(85289): 4.4e-36
Smith-Waterman score: 622; 100.0% identity (100.0% similar) in 97 aa overlap (104-200:1-97)
80 90 100 110 120 130
pF1KB7 RFITKIWHPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQALLAAAEPDDPQDAVVANQ
::::::::::::::::::::::::::::::
NP_001 MTLRTVLLSLQALLAAAEPDDPQDAVVANQ
10 20 30
140 150 160 170 180 190
pF1KB7 YKQNPEMFKQTARLWAHVYAGAPVSSPEYTKKIENLCAMGFDRNAVIVALSSKSWDVETA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 YKQNPEMFKQTARLWAHVYAGAPVSSPEYTKKIENLCAMGFDRNAVIVALSSKSWDVETA
40 50 60 70 80 90
200
pF1KB7 TELLLSN
:::::::
NP_001 TELLLSN
>>NP_001299577 (OMIM: 602846) ubiquitin-conjugating enzy (97 aa)
initn: 622 init1: 622 opt: 622 Z-score: 768.7 bits: 148.1 E(85289): 4.4e-36
Smith-Waterman score: 622; 100.0% identity (100.0% similar) in 97 aa overlap (104-200:1-97)
80 90 100 110 120 130
pF1KB7 RFITKIWHPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQALLAAAEPDDPQDAVVANQ
::::::::::::::::::::::::::::::
NP_001 MTLRTVLLSLQALLAAAEPDDPQDAVVANQ
10 20 30
140 150 160 170 180 190
pF1KB7 YKQNPEMFKQTARLWAHVYAGAPVSSPEYTKKIENLCAMGFDRNAVIVALSSKSWDVETA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 YKQNPEMFKQTARLWAHVYAGAPVSSPEYTKKIENLCAMGFDRNAVIVALSSKSWDVETA
40 50 60 70 80 90
200
pF1KB7 TELLLSN
:::::::
NP_001 TELLLSN
>>NP_001299575 (OMIM: 602846) ubiquitin-conjugating enzy (139 aa)
initn: 497 init1: 477 opt: 477 Z-score: 590.1 bits: 115.5 E(85289): 3.9e-26
Smith-Waterman score: 783; 69.5% identity (69.5% similar) in 200 aa overlap (1-200:1-139)
10 20 30 40 50 60
pF1KB7 MANIAVQRIKREFKEVLKSEETSKNQIKVDLVDENFTELRGEIAGPPDTPYEGGRYQLEI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MANIAVQRIKREFKEVLKSEETSKNQIKVDLVDENFTELRGEIAGPPDTPYEGGRYQLEI
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB7 KIPETYPFNPPKVRFITKIWHPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQALLAAA
::::::::::::
NP_001 KIPETYPFNPPK------------------------------------------------
70
130 140 150 160 170 180
pF1KB7 EPDDPQDAVVANQYKQNPEMFKQTARLWAHVYAGAPVSSPEYTKKIENLCAMGFDRNAVI
:::::::::::::::::::::::::::::::::::::::::::::::
NP_001 -------------YKQNPEMFKQTARLWAHVYAGAPVSSPEYTKKIENLCAMGFDRNAVI
80 90 100 110
190 200
pF1KB7 VALSSKSWDVETATELLLSN
::::::::::::::::::::
NP_001 VALSSKSWDVETATELLLSN
120 130
>>NP_003339 (OMIM: 603679) ubiquitin-conjugating enzyme (152 aa)
initn: 439 init1: 244 opt: 444 Z-score: 549.4 bits: 108.1 E(85289): 7.3e-24
Smith-Waterman score: 444; 47.9% identity (72.9% similar) in 144 aa overlap (10-153:6-148)
10 20 30 40 50 60
pF1KB7 MANIAVQRIKREFKEVLKSEETSKNQIKVDLVDENFTELRGEIAGPPDTPYEGGRYQLEI
.: .::. . ::.. . : .. :::: :.:.::: ..::.
NP_003 MAGLPRRIIKETQRLLAEPVPGIKAEPDESNARYFHVVIAGPQDSPFEGGTFKLEL
10 20 30 40 50
70 80 90 100 110 120
pF1KB7 KIPETYPFNPPKVRFITKIWHPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQALLAAA
.:: ::. :::::.:::.:::.... : ::::::::.:. :. .::::::.::::.:
NP_003 FLPEEYPMAAPKVRFMTKIYHPNVDKL-GRICLDILKDKWSPALQIRTVLLSIQALLSAP
60 70 80 90 100 110
130 140 150 160 170 180
pF1KB7 EPDDPQDAVVANQYKQNPEMFKQTARLWAHVYAGAPVSSPEYTKKIENLCAMGFDRNAVI
.:::: ::.:.: : . .::: :...::
NP_003 NPDDPLANDVAEQWKTNEAQAIETARAWTRLYAMNNI
120 130 140 150
190 200
pF1KB7 VALSSKSWDVETATELLLSN
>>NP_003329 (OMIM: 602961) ubiquitin-conjugating enzyme (147 aa)
initn: 392 init1: 205 opt: 405 Z-score: 502.1 bits: 99.3 E(85289): 3.1e-21
Smith-Waterman score: 405; 40.0% identity (73.3% similar) in 150 aa overlap (4-153:1-146)
10 20 30 40 50 60
pF1KB7 MANIAVQRIKREFKEVLKSEETSKNQIKVDLVDENFTELRGEIAGPPDTPYEGGRYQLEI
.:..::..:.... .. . . .. : ... . .. : ::::. :.:: . : .
NP_003 MALKRIQKELSDLQRDPPA---HCSAGPVGDDLFHWQATIMGPPDSAYQGGVFFLTV
10 20 30 40 50
70 80 90 100 110 120
pF1KB7 KIPETYPFNPPKVRFITKIWHPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQALLAAA
..: :::.:::. : :::.::::.: .:.::::::..::. :.:. ::::. .::
NP_003 HFPTDYPFKPPKIAFTTKIYHPNINS-NGSICLDILRSQWSPALTVSKVLLSICSLLCDP
60 70 80 90 100 110
130 140 150 160 170 180
pF1KB7 EPDDPQDAVVANQYKQNPEMFKQTARLWAHVYAGAPVSSPEYTKKIENLCAMGFDRNAVI
.:::: .:. ::.. : ... :: :.. ::
NP_003 NPDDPLVPDIAQIYKSDKEKYNRHAREWTQKYAM
120 130 140
190 200
pF1KB7 VALSSKSWDVETATELLLSN
>>NP_003330 (OMIM: 602962) ubiquitin-conjugating enzyme (147 aa)
initn: 393 init1: 207 opt: 405 Z-score: 502.1 bits: 99.3 E(85289): 3.1e-21
Smith-Waterman score: 405; 41.3% identity (72.0% similar) in 150 aa overlap (4-153:1-146)
10 20 30 40 50 60
pF1KB7 MANIAVQRIKREFKEVLKSEETSKNQIKVDLVDENFTELRGEIAGPPDTPYEGGRYQLEI
.:..::..:.... .. . : .. : ... . .. : :: :.::.:: . : :
NP_003 MALKRIHKELNDLARDPPA---QCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTI
10 20 30 40 50
70 80 90 100 110 120
pF1KB7 KIPETYPFNPPKVRFITKIWHPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQALLAAA
..: :::.:::: : :.:.::::.: .:.::::::..::. :.:. ::::. .::
NP_003 HFPTDYPFKPPKVAFTTRIYHPNINS-NGSICLDILRSQWSPALTISKVLLSICSLLCDP
60 70 80 90 100 110
130 140 150 160 170 180
pF1KB7 EPDDPQDAVVANQYKQNPEMFKQTARLWAHVYAGAPVSSPEYTKKIENLCAMGFDRNAVI
.:::: .: :: . : ... :: :.. ::
NP_003 NPDDPLVPEIARIYKTDREKYNRIAREWTQKYAM
120 130 140
190 200
pF1KB7 VALSSKSWDVETATELLLSN
>>NP_871621 (OMIM: 602963) ubiquitin-conjugating enzyme (148 aa)
initn: 386 init1: 205 opt: 400 Z-score: 496.0 bits: 98.2 E(85289): 6.9e-21
Smith-Waterman score: 400; 40.7% identity (72.0% similar) in 150 aa overlap (4-153:1-146)
10 20 30 40 50 60
pF1KB7 MANIAVQRIKREFKEVLKSEETSKNQIKVDLVDENFTELRGEIAGPPDTPYEGGRYQLEI
.:..::..:.... .. . : .. : ... . .. : :: :.::.:: . : :
NP_871 MALKRINKELSDLARDPPA---QCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTI
10 20 30 40 50
70 80 90 100 110 120
pF1KB7 KIPETYPFNPPKVRFITKIWHPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQALLAAA
..: :::.:::: : :.:.::::.: .:.::::::..::. :.:. ::::. .::
NP_871 HFPTDYPFKPPKVAFTTRIYHPNINS-NGSICLDILRSQWSPALTISKVLLSICSLLCDP
60 70 80 90 100 110
130 140 150 160 170 180
pF1KB7 EPDDPQDAVVANQYKQNPEMFKQTARLWAHVYAGAPVSSPEYTKKIENLCAMGFDRNAVI
.:::: .: :: . . ... :: :.. ::
NP_871 NPDDPLVPEIARIYKTDRDKYNRLAREWTEKYAML
120 130 140
190 200
pF1KB7 VALSSKSWDVETATELLLSN
200 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Sat Nov 5 14:39:04 2016 done: Sat Nov 5 14:39:05 2016
Total Scan time: 6.190 Total Display time: 0.000
Function used was FASTA [36.3.4 Apr, 2011]