Result of FASTA (omim) for pF1KB6956
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB6956, 238 aa
  1>>>pF1KB6956 238 - 238 aa - 238 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 8.4921+/-0.000419; mu= 2.1958+/- 0.027
 mean_var=310.5542+/-63.994, 0's: 0 Z-trim(122.1): 269  B-trim: 2311 in 2/59
 Lambda= 0.072779
 statistics sampled from 39411 (39757) to 39411 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.778), E-opt: 0.2 (0.466), width:  16
 Scan time:  6.710

The best scores are:                                      opt bits E(85289)
NP_001026854 (OMIM: 600572) serine/arginine-rich s ( 238) 1623 183.0 3.9e-46
XP_005264541 (OMIM: 600572) PREDICTED: serine/argi ( 235) 1584 178.9 6.6e-45
NP_001182375 (OMIM: 600572) serine/arginine-rich s ( 226) 1471 167.0 2.4e-41
XP_005264542 (OMIM: 600572) PREDICTED: serine/argi ( 223) 1432 162.9 4.1e-40
XP_011531334 (OMIM: 600572) PREDICTED: serine/argi ( 121)  710 86.8 1.8e-17
NP_003008 (OMIM: 603364) serine/arginine-rich spli ( 164)  557 70.9 1.5e-12
XP_016880431 (OMIM: 600813) PREDICTED: serine/argi ( 221)  436 58.4 1.2e-08
NP_001182356 (OMIM: 600813) serine/arginine-rich s ( 221)  436 58.4 1.2e-08
NP_003007 (OMIM: 600813) serine/arginine-rich spli ( 221)  436 58.4 1.2e-08
NP_001177934 (OMIM: 605221) serine/arginine-rich s ( 261)  395 54.1 2.7e-07
NP_473357 (OMIM: 605221) serine/arginine-rich spli ( 262)  389 53.5 4.1e-07
NP_115285 (OMIM: 603269) serine/arginine-rich spli ( 282)  376 52.2 1.1e-06
XP_016872631 (OMIM: 603269) PREDICTED: serine/argi ( 282)  376 52.2 1.1e-06
NP_001287866 (OMIM: 605221) serine/arginine-rich s ( 217)  348 49.1 7.3e-06
NP_001177936 (OMIM: 605221) serine/arginine-rich s ( 182)  314 45.4 7.8e-05
NP_001287865 (OMIM: 605221) serine/arginine-rich s ( 172)  310 45.0  0.0001
NP_006616 (OMIM: 605221) serine/arginine-rich spli ( 183)  308 44.8 0.00012
NP_001177935 (OMIM: 605221) serine/arginine-rich s ( 173)  304 44.4 0.00016
NP_008855 (OMIM: 600812) serine/arginine-rich spli ( 248)  299 44.0 0.00028
XP_016858320 (OMIM: 602010) PREDICTED: serine/argi ( 293)  295 43.7 0.00042
XP_016858319 (OMIM: 602010) PREDICTED: serine/argi ( 293)  295 43.7 0.00042
XP_016858323 (OMIM: 602010) PREDICTED: serine/argi ( 293)  295 43.7 0.00042
XP_016858321 (OMIM: 602010) PREDICTED: serine/argi ( 293)  295 43.7 0.00042
XP_016858322 (OMIM: 602010) PREDICTED: serine/argi ( 293)  295 43.7 0.00042
XP_016858315 (OMIM: 602010) PREDICTED: serine/argi ( 294)  295 43.7 0.00042
XP_016858313 (OMIM: 602010) PREDICTED: serine/argi ( 294)  295 43.7 0.00042
XP_016858314 (OMIM: 602010) PREDICTED: serine/argi ( 294)  295 43.7 0.00042
XP_016858312 (OMIM: 602010) PREDICTED: serine/argi ( 294)  295 43.7 0.00042
XP_016858318 (OMIM: 602010) PREDICTED: serine/argi ( 294)  295 43.7 0.00042
XP_016858317 (OMIM: 602010) PREDICTED: serine/argi ( 294)  295 43.7 0.00042
XP_016858316 (OMIM: 602010) PREDICTED: serine/argi ( 294)  295 43.7 0.00042
XP_016858311 (OMIM: 602010) PREDICTED: serine/argi ( 294)  295 43.7 0.00042
XP_016858302 (OMIM: 602010) PREDICTED: serine/argi ( 483)  295 44.0 0.00057
NP_001177916 (OMIM: 602010) serine/arginine-rich s ( 483)  295 44.0 0.00057
XP_016858301 (OMIM: 602010) PREDICTED: serine/argi ( 484)  295 44.0 0.00057
XP_011540729 (OMIM: 602010) PREDICTED: serine/argi ( 484)  295 44.0 0.00057
NP_004759 (OMIM: 602010) serine/arginine-rich spli ( 484)  295 44.0 0.00057
NP_005617 (OMIM: 601940) serine/arginine-rich spli ( 494)  289 43.4 0.00089
NP_001177938 (OMIM: 605221) serine/arginine-rich s ( 165)  275 41.3  0.0012
XP_016864544 (OMIM: 609268) PREDICTED: splicing re ( 503)  279 42.3  0.0019
NP_006266 (OMIM: 601944) serine/arginine-rich spli ( 344)  274 41.6  0.0021
XP_016858310 (OMIM: 602010) PREDICTED: serine/argi ( 300)  261 40.1   0.005
XP_016858309 (OMIM: 602010) PREDICTED: serine/argi ( 300)  261 40.1   0.005
XP_016858307 (OMIM: 602010) PREDICTED: serine/argi ( 301)  261 40.1   0.005
XP_016858306 (OMIM: 602010) PREDICTED: serine/argi ( 301)  261 40.1   0.005
XP_016858308 (OMIM: 602010) PREDICTED: serine/argi ( 301)  261 40.1   0.005
XP_016858305 (OMIM: 602010) PREDICTED: serine/argi ( 301)  261 40.1   0.005
XP_011540730 (OMIM: 602010) PREDICTED: serine/argi ( 431)  261 40.3  0.0063
XP_016858304 (OMIM: 602010) PREDICTED: serine/argi ( 431)  261 40.3  0.0063
XP_011540733 (OMIM: 602010) PREDICTED: serine/argi ( 431)  261 40.3  0.0063


>>NP_001026854 (OMIM: 600572) serine/arginine-rich splic  (238 aa)
 initn: 1623 init1: 1623 opt: 1623  Z-score: 949.3  bits: 183.0 E(85289): 3.9e-46
Smith-Waterman score: 1623; 100.0% identity (100.0% similar) in 238 aa overlap (1-238:1-238)

               10        20        30        40        50        60
pF1KB6 MSRYGRYGGETKVYVGNLGTGAGKGELERAFSYYGPLRTVWIARNPPGFAFVEFEDPRDA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MSRYGRYGGETKVYVGNLGTGAGKGELERAFSYYGPLRTVWIARNPPGFAFVEFEDPRDA
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB6 EDAVRGLDGKVICGSRVRVELSTGMPRRSRFDRPPARRPFDPNDRCYECGEKGHYAYDCH
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 EDAVRGLDGKVICGSRVRVELSTGMPRRSRFDRPPARRPFDPNDRCYECGEKGHYAYDCH
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB6 RYSRRRRSRSRSRSHSRSRGRRYSRSRSRSRGRRSRSASPRRSRSISLRRSRSASLRRSR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 RYSRRRRSRSRSRSHSRSRGRRYSRSRSRSRGRRSRSASPRRSRSISLRRSRSASLRRSR
              130       140       150       160       170       180

              190       200       210       220       230        
pF1KB6 SGSIKGSRYFQSPSRSRSRSRSISRPRSSRSKSRSPSPKRSRSPSGSPRRSASPERMD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 SGSIKGSRYFQSPSRSRSRSRSISRPRSSRSKSRSPSPKRSRSPSGSPRRSASPERMD
              190       200       210       220       230        

>>XP_005264541 (OMIM: 600572) PREDICTED: serine/arginine  (235 aa)
 initn: 1668 init1: 1293 opt: 1584  Z-score: 927.2  bits: 178.9 E(85289): 6.6e-45
Smith-Waterman score: 1584; 98.7% identity (98.7% similar) in 238 aa overlap (1-238:1-235)

               10        20        30        40        50        60
pF1KB6 MSRYGRYGGETKVYVGNLGTGAGKGELERAFSYYGPLRTVWIARNPPGFAFVEFEDPRDA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 MSRYGRYGGETKVYVGNLGTGAGKGELERAFSYYGPLRTVWIARNPPGFAFVEFEDPRDA
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB6 EDAVRGLDGKVICGSRVRVELSTGMPRRSRFDRPPARRPFDPNDRCYECGEKGHYAYDCH
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 EDAVRGLDGKVICGSRVRVELSTGMPRRSRFDRPPARRPFDPNDRCYECGEKGHYAYDCH
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB6 RYSRRRRSRSRSRSHSRSRGRRYSRSRSRSRGRRSRSASPRRSRSISLRRSRSASLRRSR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 RYSRRRRSRSRSRSHSRSRGRRYSRSRSRSRGRRSRSASPRRSRSISLRRSRSASLRRSR
              130       140       150       160       170       180

              190       200       210       220       230        
pF1KB6 SGSIKGSRYFQSPSRSRSRSRSISRPRSSRSKSRSPSPKRSRSPSGSPRRSASPERMD
       ::::::::   :::::::::::::::::::::::::::::::::::::::::::::::
XP_005 SGSIKGSR---SPSRSRSRSRSISRPRSSRSKSRSPSPKRSRSPSGSPRRSASPERMD
                 190       200       210       220       230     

>>NP_001182375 (OMIM: 600572) serine/arginine-rich splic  (226 aa)
 initn: 1894 init1: 1456 opt: 1471  Z-score: 863.3  bits: 167.0 E(85289): 2.4e-41
Smith-Waterman score: 1511; 95.0% identity (95.0% similar) in 238 aa overlap (1-238:1-226)

               10        20        30        40        50        60
pF1KB6 MSRYGRYGGETKVYVGNLGTGAGKGELERAFSYYGPLRTVWIARNPPGFAFVEFEDPRDA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MSRYGRYGGETKVYVGNLGTGAGKGELERAFSYYGPLRTVWIARNPPGFAFVEFEDPRDA
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB6 EDAVRGLDGKVICGSRVRVELSTGMPRRSRFDRPPARRPFDPNDRCYECGEKGHYAYDCH
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 EDAVRGLDGKVICGSRVRVELSTGMPRRSRFDRPPARRPFDPNDRCYECGEKGHYAYDCH
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB6 RYSRRRRSRSRSRSHSRSRGRRYSRSRSRSRGRRSRSASPRRSRSISLRRSRSASLRRSR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 RYSRRRRSRSRSRSHSRSRGRRYSRSRSRSRGRRSRSASPRRSRSISLRRSRSASLRRSR
              130       140       150       160       170       180

              190       200       210       220       230        
pF1KB6 SGSIKGSRYFQSPSRSRSRSRSISRPRSSRSKSRSPSPKRSRSPSGSPRRSASPERMD
       :::::::::::::::::::::::::::::::            :::::::::::::::
NP_001 SGSIKGSRYFQSPSRSRSRSRSISRPRSSRS------------PSGSPRRSASPERMD
              190       200       210                   220      

>>XP_005264542 (OMIM: 600572) PREDICTED: serine/arginine  (223 aa)
 initn: 1487 init1: 1293 opt: 1432  Z-score: 841.2  bits: 162.9 E(85289): 4.1e-40
Smith-Waterman score: 1472; 93.7% identity (93.7% similar) in 238 aa overlap (1-238:1-223)

               10        20        30        40        50        60
pF1KB6 MSRYGRYGGETKVYVGNLGTGAGKGELERAFSYYGPLRTVWIARNPPGFAFVEFEDPRDA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 MSRYGRYGGETKVYVGNLGTGAGKGELERAFSYYGPLRTVWIARNPPGFAFVEFEDPRDA
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB6 EDAVRGLDGKVICGSRVRVELSTGMPRRSRFDRPPARRPFDPNDRCYECGEKGHYAYDCH
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 EDAVRGLDGKVICGSRVRVELSTGMPRRSRFDRPPARRPFDPNDRCYECGEKGHYAYDCH
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB6 RYSRRRRSRSRSRSHSRSRGRRYSRSRSRSRGRRSRSASPRRSRSISLRRSRSASLRRSR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 RYSRRRRSRSRSRSHSRSRGRRYSRSRSRSRGRRSRSASPRRSRSISLRRSRSASLRRSR
              130       140       150       160       170       180

              190       200       210       220       230        
pF1KB6 SGSIKGSRYFQSPSRSRSRSRSISRPRSSRSKSRSPSPKRSRSPSGSPRRSASPERMD
       ::::::::   ::::::::::::::::::::            :::::::::::::::
XP_005 SGSIKGSR---SPSRSRSRSRSISRPRSSRS------------PSGSPRRSASPERMD
                 190       200                   210       220   

>>XP_011531334 (OMIM: 600572) PREDICTED: serine/arginine  (121 aa)
 initn: 705 init1: 705 opt: 710  Z-score: 434.5  bits: 86.8 E(85289): 1.8e-17
Smith-Waterman score: 710; 94.1% identity (96.6% similar) in 119 aa overlap (120-238:3-121)

      90       100       110       120       130       140         
pF1KB6 RFDRPPARRPFDPNDRCYECGEKGHYAYDCHRYSRRRRSRSRSRSHSRSRGRRYSRSRSR
                                     .: :  . .:::::::::::::::::::::
XP_011                             MGQRGSTCKLARSRSRSHSRSRGRRYSRSRSR
                                           10        20        30  

     150       160       170       180       190       200         
pF1KB6 SRGRRSRSASPRRSRSISLRRSRSASLRRSRSGSIKGSRYFQSPSRSRSRSRSISRPRSS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 SRGRRSRSASPRRSRSISLRRSRSASLRRSRSGSIKGSRYFQSPSRSRSRSRSISRPRSS
             40        50        60        70        80        90  

     210       220       230        
pF1KB6 RSKSRSPSPKRSRSPSGSPRRSASPERMD
       :::::::::::::::::::::::::::::
XP_011 RSKSRSPSPKRSRSPSGSPRRSASPERMD
            100       110       120 

>>NP_003008 (OMIM: 603364) serine/arginine-rich splicing  (164 aa)
 initn: 769 init1: 427 opt: 557  Z-score: 346.2  bits: 70.9 E(85289): 1.5e-12
Smith-Waterman score: 557; 60.0% identity (72.7% similar) in 165 aa overlap (10-170:9-163)

               10        20        30        40        50        60
pF1KB6 MSRYGRYGGETKVYVGNLGTGAGKGELERAFSYYGPLRTVWIARNPPGFAFVEFEDPRDA
                . ::::::::....: ::::::.::::::.::.::::::::::::::::::
NP_003  MHRDSCPLDCKVYVGNLGNNGNKTELERAFGYYGPLRSVWVARNPPGFAFVEFEDPRDA
                10        20        30        40        50         

               70        80        90          100       110       
pF1KB6 EDAVRGLDGKVICGSRVRVELSTGMPRRSRFDRPP---ARRPFDPNDRCYECGEKGHYAY
        :::: :::...:: :::::::.:  .:::   ::   .::: :   :          . 
NP_003 ADAVRELDGRTLCGCRVRVELSNG-EKRSRNRGPPPSWGRRPRDDYRR---------RSP
      60        70        80         90       100                  

       120       130       140       150        160       170      
pF1KB6 DCHRYSRRRRSRSRSRSHSRSRGRRYSRSRSRSRGRR-SRSASPRRSRSISLRRSRSASL
         .: : :::: :::::.: :: ::  :: :: :... ::: :  :::: : .:      
NP_003 PPRRRSPRRRSFSRSRSRSLSRDRRRERSLSRERNHKPSRSFSRSRSRSRSNERK     
     110       120       130       140       150       160         

        180       190       200       210       220       230      
pF1KB6 RRSRSGSIKGSRYFQSPSRSRSRSRSISRPRSSRSKSRSPSPKRSRSPSGSPRRSASPER

>>XP_016880431 (OMIM: 600813) PREDICTED: serine/arginine  (221 aa)
 initn: 442 init1: 243 opt: 436  Z-score: 276.1  bits: 58.4 E(85289): 1.2e-08
Smith-Waterman score: 459; 44.1% identity (59.7% similar) in 238 aa overlap (4-227:3-218)

                   10        20        30        40             50 
pF1KB6 MSRYGR----YGGETKVYVGNLGTGAGKGELERAFSYYGPLRTVWIARN-----PPGFAF
          :::      : :.. : ::   ..   :.:.:  :: .  :.: :.       ::::
XP_016  MSYGRPPPDVEGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAF
                10        20        30        40        50         

              60        70        80        90           100       
pF1KB6 VEFEDPRDAEDAVRGLDGKVICGSRVRVELSTGMPRRSRFDRPP----ARRPFDPNDRCY
       :.:.: ::::::. ..:: :. : ..::...       :. :::    .::   :  : :
XP_016 VRFHDKRDAEDAMDAMDGAVLDGRELRVQMA-------RYGRPPDSHHSRR--GPPPRRY
      60        70        80        90              100         110

       110       120       130       140        150       160      
pF1KB6 ECGEKGHYAYDCHRYSRRRRSRSRSRSHSRSRGR-RYSRSRSRSRGRRSRSASPRRSRSI
         :  : :.   .   :::::::::::.::::.: :::::.::::  :::: :  .::: 
XP_016 --G-GGGYGRRSRSPRRRRRSRSRSRSRSRSRSRSRYSRSKSRSR-TRSRSRSTSKSRSA
                 120       130       140       150        160      

        170       180       190       200       210       220      
pF1KB6 SLRRSRSASLRRSRSGSIKGSRYFQSPSRSRSRSRSISRPRSSRSKSRSPSPKRSRSPSG
          .:.:.:. ::::         .: :::::::      : :.:.::: :: .:    :
XP_016 RRSKSKSSSVSRSRS---------RSRSRSRSRSPPPVSKRESKSRSRSKSPPKSPEEEG
        170       180                190       200       210       

        230        
pF1KB6 SPRRSASPERMD
       .           
XP_016 AVSS        
       220         

>>NP_001182356 (OMIM: 600813) serine/arginine-rich splic  (221 aa)
 initn: 442 init1: 243 opt: 436  Z-score: 276.1  bits: 58.4 E(85289): 1.2e-08
Smith-Waterman score: 459; 44.1% identity (59.7% similar) in 238 aa overlap (4-227:3-218)

                   10        20        30        40             50 
pF1KB6 MSRYGR----YGGETKVYVGNLGTGAGKGELERAFSYYGPLRTVWIARN-----PPGFAF
          :::      : :.. : ::   ..   :.:.:  :: .  :.: :.       ::::
NP_001  MSYGRPPPDVEGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAF
                10        20        30        40        50         

              60        70        80        90           100       
pF1KB6 VEFEDPRDAEDAVRGLDGKVICGSRVRVELSTGMPRRSRFDRPP----ARRPFDPNDRCY
       :.:.: ::::::. ..:: :. : ..::...       :. :::    .::   :  : :
NP_001 VRFHDKRDAEDAMDAMDGAVLDGRELRVQMA-------RYGRPPDSHHSRR--GPPPRRY
      60        70        80        90              100         110

       110       120       130       140        150       160      
pF1KB6 ECGEKGHYAYDCHRYSRRRRSRSRSRSHSRSRGR-RYSRSRSRSRGRRSRSASPRRSRSI
         :  : :.   .   :::::::::::.::::.: :::::.::::  :::: :  .::: 
NP_001 --G-GGGYGRRSRSPRRRRRSRSRSRSRSRSRSRSRYSRSKSRSR-TRSRSRSTSKSRSA
                 120       130       140       150        160      

        170       180       190       200       210       220      
pF1KB6 SLRRSRSASLRRSRSGSIKGSRYFQSPSRSRSRSRSISRPRSSRSKSRSPSPKRSRSPSG
          .:.:.:. ::::         .: :::::::      : :.:.::: :: .:    :
NP_001 RRSKSKSSSVSRSRS---------RSRSRSRSRSPPPVSKRESKSRSRSKSPPKSPEEEG
        170       180                190       200       210       

        230        
pF1KB6 SPRRSASPERMD
       .           
NP_001 AVSS        
       220         

>>NP_003007 (OMIM: 600813) serine/arginine-rich splicing  (221 aa)
 initn: 442 init1: 243 opt: 436  Z-score: 276.1  bits: 58.4 E(85289): 1.2e-08
Smith-Waterman score: 459; 44.1% identity (59.7% similar) in 238 aa overlap (4-227:3-218)

                   10        20        30        40             50 
pF1KB6 MSRYGR----YGGETKVYVGNLGTGAGKGELERAFSYYGPLRTVWIARN-----PPGFAF
          :::      : :.. : ::   ..   :.:.:  :: .  :.: :.       ::::
NP_003  MSYGRPPPDVEGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAF
                10        20        30        40        50         

              60        70        80        90           100       
pF1KB6 VEFEDPRDAEDAVRGLDGKVICGSRVRVELSTGMPRRSRFDRPP----ARRPFDPNDRCY
       :.:.: ::::::. ..:: :. : ..::...       :. :::    .::   :  : :
NP_003 VRFHDKRDAEDAMDAMDGAVLDGRELRVQMA-------RYGRPPDSHHSRR--GPPPRRY
      60        70        80        90              100         110

       110       120       130       140        150       160      
pF1KB6 ECGEKGHYAYDCHRYSRRRRSRSRSRSHSRSRGR-RYSRSRSRSRGRRSRSASPRRSRSI
         :  : :.   .   :::::::::::.::::.: :::::.::::  :::: :  .::: 
NP_003 --G-GGGYGRRSRSPRRRRRSRSRSRSRSRSRSRSRYSRSKSRSR-TRSRSRSTSKSRSA
                 120       130       140       150        160      

        170       180       190       200       210       220      
pF1KB6 SLRRSRSASLRRSRSGSIKGSRYFQSPSRSRSRSRSISRPRSSRSKSRSPSPKRSRSPSG
          .:.:.:. ::::         .: :::::::      : :.:.::: :: .:    :
NP_003 RRSKSKSSSVSRSRS---------RSRSRSRSRSPPPVSKRESKSRSRSKSPPKSPEEEG
        170       180                190       200       210       

        230        
pF1KB6 SPRRSASPERMD
       .           
NP_003 AVSS        
       220         

>>NP_001177934 (OMIM: 605221) serine/arginine-rich splic  (261 aa)
 initn: 453 init1: 149 opt: 395  Z-score: 252.0  bits: 54.1 E(85289): 2.7e-07
Smith-Waterman score: 404; 37.2% identity (60.2% similar) in 266 aa overlap (1-231:1-259)

               10        20        30        40             50     
pF1KB6 MSRYGRYGGETKVYVGNLGTGAGKGELERAFSYYGPLRTVWI-----ARNPPGFAFVEFE
       :::: :   .:...: :..  . . .:.: :. :::.  :..     .: : :::.:.::
NP_001 MSRYLR-PPNTSLFVRNVADDTRSEDLRREFGRYGPIVDVYVPLDFYTRRPRGFAYVQFE
                10        20        30        40        50         

          60        70        80                       90       100
pF1KB6 DPRDAEDAVRGLDGKVICGSRVRVELSTG---MPRR------------SRFDRPPARRPF
       : ::::::...:: : ::: ....... :    : .            ::.:     :  
NP_001 DVRDAEDALHNLDRKWICGRQIEIQFAQGDRKTPNQMKAKEGRNVYSSSRYDDYDRYR--
      60        70        80        90       100       110         

              110        120       130                 140         
pF1KB6 DPNDRCYECGEKGHYAYD-CHRYSRRRRSRS-----RSRSHS-----RSRGRRYSRSRSR
          .: ::  ..   ..:  .: :   :.:      ::::::     . :.: .:::.: 
NP_001 RSRSRSYERRRSRSRSFDYNYRRSYSPRNRPTGRPRRSRSHSDNDRFKHRNRSFSRSKSN
       120       130       140       150       160       170       

     150       160       170       180        190       200        
pF1KB6 SRGRRSRSASPRRSRSISLRRSRSASLRRSRSGSIKGSR-YFQSPSRSRSRSRSISRPRS
       ::.: :.:   .. .. :  ::::::  ..:. :   :. ...: :: ...::.   :::
NP_001 SRSR-SKSQPKKEMKAKS--RSRSASHTKTRGTSKTDSKTHYKSGSRYEKESRKKEPPRS
       180        190         200       210       220       230    

         210       220       230        
pF1KB6 ---SRSKSRSPSPKRSRSPSGSPRRSASPERMD
          :::.::: : .:::: . ::. :       
NP_001 KSQSRSQSRSRSKSRSRSWT-SPKSSGH     
          240       250        260      




238 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sat Nov  5 14:31:27 2016 done: Sat Nov  5 14:31:28 2016
 Total Scan time:  6.710 Total Display time: -0.010

Function used was FASTA [36.3.4 Apr, 2011]
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