Result of FASTA (ccds) for pF1KB5284
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB5284, 189 aa
  1>>>pF1KB5284 189 - 189 aa - 189 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 8.0372+/-0.0009; mu= 1.8570+/- 0.054
 mean_var=189.1288+/-37.227, 0's: 0 Z-trim(112.0): 18  B-trim: 15 in 1/52
 Lambda= 0.093260
 statistics sampled from 12808 (12820) to 12808 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.75), E-opt: 0.2 (0.394), width:  16
 Scan time:  2.270

The best scores are:                                      opt bits E(32554)
CCDS64852.1 STMN4 gene_id:81551|Hs108|chr8         ( 189) 1219 175.4 1.8e-44
CCDS64851.1 STMN4 gene_id:81551|Hs108|chr8         ( 167) 1052 152.9 9.8e-38
CCDS6055.1 STMN4 gene_id:81551|Hs108|chr8          ( 216)  985 144.0 6.1e-35
CCDS64854.1 STMN4 gene_id:81551|Hs108|chr8         ( 203)  871 128.6 2.4e-30
CCDS269.1 STMN1 gene_id:3925|Hs108|chr1            ( 149)  623 95.1 2.1e-20
CCDS43748.1 STMN2 gene_id:11075|Hs108|chr8         ( 179)  601 92.2 1.9e-19
CCDS63330.1 STMN3 gene_id:50861|Hs108|chr20        ( 169)  562 87.0 6.9e-18
CCDS13529.1 STMN3 gene_id:50861|Hs108|chr20        ( 180)  562 87.0 7.3e-18
CCDS44090.1 STMN1 gene_id:3925|Hs108|chr1          ( 174)  542 84.3 4.6e-17
CCDS56542.1 STMN2 gene_id:11075|Hs108|chr8         ( 187)  529 82.6 1.6e-16


>>CCDS64852.1 STMN4 gene_id:81551|Hs108|chr8              (189 aa)
 initn: 1219 init1: 1219 opt: 1219  Z-score: 911.7  bits: 175.4 E(32554): 1.8e-44
Smith-Waterman score: 1219; 100.0% identity (100.0% similar) in 189 aa overlap (1-189:1-189)

               10        20        30        40        50        60
pF1KB5 MTLAAYKEKMKELPLVSLFCSCFLADPLNKSSYKYEADTVDLNWCVISDMEVIELNKCTS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS64 MTLAAYKEKMKELPLVSLFCSCFLADPLNKSSYKYEADTVDLNWCVISDMEVIELNKCTS
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB5 GQSFEVILKPPSFDGVPEFNASLPRRRDPSLEEIQKKLEAAEERRKYQEAELLKHLAEKR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS64 GQSFEVILKPPSFDGVPEFNASLPRRRDPSLEEIQKKLEAAEERRKYQEAELLKHLAEKR
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB5 EHEREVIQKAIEENNNFIKMAKEKLAQKMESNKENREAHLAAMLERLQEKDKHAEEVRKN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS64 EHEREVIQKAIEENNNFIKMAKEKLAQKMESNKENREAHLAAMLERLQEKDKHAEEVRKN
              130       140       150       160       170       180

                
pF1KB5 KELKEEASR
       :::::::::
CCDS64 KELKEEASR
                

>>CCDS64851.1 STMN4 gene_id:81551|Hs108|chr8              (167 aa)
 initn: 1052 init1: 1052 opt: 1052  Z-score: 791.0  bits: 152.9 E(32554): 9.8e-38
Smith-Waterman score: 1052; 98.2% identity (98.8% similar) in 165 aa overlap (10-174:1-165)

               10        20        30        40        50        60
pF1KB5 MTLAAYKEKMKELPLVSLFCSCFLADPLNKSSYKYEADTVDLNWCVISDMEVIELNKCTS
                :::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS64          MKELPLVSLFCSCFLADPLNKSSYKYEADTVDLNWCVISDMEVIELNKCTS
                        10        20        30        40        50 

               70        80        90       100       110       120
pF1KB5 GQSFEVILKPPSFDGVPEFNASLPRRRDPSLEEIQKKLEAAEERRKYQEAELLKHLAEKR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS64 GQSFEVILKPPSFDGVPEFNASLPRRRDPSLEEIQKKLEAAEERRKYQEAELLKHLAEKR
              60        70        80        90       100       110 

              130       140       150       160       170       180
pF1KB5 EHEREVIQKAIEENNNFIKMAKEKLAQKMESNKENREAHLAAMLERLQEKDKHAEEVRKN
       ::::::::::::::::::::::::::::::::::::::::::::::::::.  :      
CCDS64 EHEREVIQKAIEENNNFIKMAKEKLAQKMESNKENREAHLAAMLERLQEKEPPAAR    
             120       130       140       150       160           

                
pF1KB5 KELKEEASR

>>CCDS6055.1 STMN4 gene_id:81551|Hs108|chr8               (216 aa)
 initn: 984 init1: 984 opt: 985  Z-score: 740.7  bits: 144.0 E(32554): 6.1e-35
Smith-Waterman score: 1155; 87.5% identity (87.5% similar) in 216 aa overlap (1-189:1-216)

               10        20        30                              
pF1KB5 MTLAAYKEKMKELPLVSLFCSCFLADPLNKSSYKYE------------------------
       ::::::::::::::::::::::::::::::::::::                        
CCDS60 MTLAAYKEKMKELPLVSLFCSCFLADPLNKSSYKYEGWCGRQCRRKDESQRKDSADWRER
               10        20        30        40        50        60

            40        50        60        70        80        90   
pF1KB5 ---ADTVDLNWCVISDMEVIELNKCTSGQSFEVILKPPSFDGVPEFNASLPRRRDPSLEE
          :::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS60 RAQADTVDLNWCVISDMEVIELNKCTSGQSFEVILKPPSFDGVPEFNASLPRRRDPSLEE
               70        80        90       100       110       120

           100       110       120       130       140       150   
pF1KB5 IQKKLEAAEERRKYQEAELLKHLAEKREHEREVIQKAIEENNNFIKMAKEKLAQKMESNK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS60 IQKKLEAAEERRKYQEAELLKHLAEKREHEREVIQKAIEENNNFIKMAKEKLAQKMESNK
              130       140       150       160       170       180

           160       170       180         
pF1KB5 ENREAHLAAMLERLQEKDKHAEEVRKNKELKEEASR
       ::::::::::::::::::::::::::::::::::::
CCDS60 ENREAHLAAMLERLQEKDKHAEEVRKNKELKEEASR
              190       200       210      

>>CCDS64854.1 STMN4 gene_id:81551|Hs108|chr8              (203 aa)
 initn: 1091 init1: 867 opt: 871  Z-score: 658.2  bits: 128.6 E(32554): 2.4e-30
Smith-Waterman score: 1041; 85.1% identity (85.6% similar) in 201 aa overlap (1-174:1-201)

               10        20        30                              
pF1KB5 MTLAAYKEKMKELPLVSLFCSCFLADPLNKSSYKYE------------------------
       ::::::::::::::::::::::::::::::::::::                        
CCDS64 MTLAAYKEKMKELPLVSLFCSCFLADPLNKSSYKYEGWCGRQCRRKDESQRKDSADWRER
               10        20        30        40        50        60

            40        50        60        70        80        90   
pF1KB5 ---ADTVDLNWCVISDMEVIELNKCTSGQSFEVILKPPSFDGVPEFNASLPRRRDPSLEE
          :::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS64 RAQADTVDLNWCVISDMEVIELNKCTSGQSFEVILKPPSFDGVPEFNASLPRRRDPSLEE
               70        80        90       100       110       120

           100       110       120       130       140       150   
pF1KB5 IQKKLEAAEERRKYQEAELLKHLAEKREHEREVIQKAIEENNNFIKMAKEKLAQKMESNK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS64 IQKKLEAAEERRKYQEAELLKHLAEKREHEREVIQKAIEENNNFIKMAKEKLAQKMESNK
              130       140       150       160       170       180

           160       170       180         
pF1KB5 ENREAHLAAMLERLQEKDKHAEEVRKNKELKEEASR
       :::::::::::::::::.  :               
CCDS64 ENREAHLAAMLERLQEKEPPAAR             
              190       200                

>>CCDS269.1 STMN1 gene_id:3925|Hs108|chr1                 (149 aa)
 initn: 711 init1: 623 opt: 623  Z-score: 479.7  bits: 95.1 E(32554): 2.1e-20
Smith-Waterman score: 623; 72.1% identity (90.0% similar) in 140 aa overlap (48-187:4-143)

        20        30        40        50        60        70       
pF1KB5 LFCSCFLADPLNKSSYKYEADTVDLNWCVISDMEVIELNKCTSGQSFEVILKPPSFDGVP
                                     ::..: ::.: .:::.::.::.: : ..::
CCDS26                            MASSDIQVKELEKRASGQAFELILSPRSKESVP
                                          10        20        30   

        80        90       100       110       120       130       
pF1KB5 EFNASLPRRRDPSLEEIQKKLEAAEERRKYQEAELLKHLAEKREHEREVIQKAIEENNNF
       ::  : :...: ::::::::::::::::: .:::.::.::::::::.::.::::::::::
CCDS26 EFPLSPPKKKDLSLEEIQKKLEAAEERRKSHEAEVLKQLAEKREHEKEVLQKAIEENNNF
            40        50        60        70        80        90   

       140       150       160       170       180             
pF1KB5 IKMAKEKLAQKMESNKENREAHLAAMLERLQEKDKHAEEVRKNKELKEEASR    
        :::.:::..:::.:::::::..:: ::::.::::: :::::::: :. :      
CCDS26 SKMAEEKLTHKMEANKENREAQMAAKLERLREKDKHIEEVRKNKESKDPADETEAD
           100       110       120       130       140         

>>CCDS43748.1 STMN2 gene_id:11075|Hs108|chr8              (179 aa)
 initn: 755 init1: 590 opt: 601  Z-score: 462.6  bits: 92.2 E(32554): 1.9e-19
Smith-Waterman score: 698; 63.3% identity (80.3% similar) in 188 aa overlap (2-188:4-178)

                 10        20        30        40        50        
pF1KB5   MTLAAYKEKMKELPLVSLFCSCFLADPLNKSSYKYEADTVDLNWCVISDMEVIELNKC
          :  ::::::::: ..::.::::  .: : . : :.            :::: ..:: 
CCDS43 MAKTAMAYKEKMKELSMLSLICSCFYPEPRNINIYTYD------------DMEVKQINKR
               10        20        30                    40        

       60        70         80        90       100       110       
pF1KB5 TSGQSFEVILKPPS-FDGVPEFNASLPRRRDPSLEEIQKKLEAAEERRKYQEAELLKHLA
       .:::.::.:::::: .. .:.  :: :...: ::::::::::::::::: :::..::.::
CCDS43 ASGQAFELILKPPSPISEAPRTLAS-PKKKDLSLEEIQKKLEAAEERRKSQEAQVLKQLA
       50        60        70         80        90       100       

       120       130       140       150       160       170       
pF1KB5 EKREHEREVIQKAIEENNNFIKMAKEKLAQKMESNKENREAHLAAMLERLQEKDKHAEEV
       :::::::::.:::.:::::: :::.:::  :::. ::::::.:::..::::::..:: ::
CCDS43 EKREHEREVLQKALEENNNFSKMAEEKLILKMEQIKENREANLAAIIERLQEKERHAAEV
       110       120       130       140       150       160       

       180         
pF1KB5 RKNKELKEEASR
       :.::::. : : 
CCDS43 RRNKELQVELSG
       170         

>>CCDS63330.1 STMN3 gene_id:50861|Hs108|chr20             (169 aa)
 initn: 661 init1: 438 opt: 562  Z-score: 434.6  bits: 87.0 E(32554): 6.9e-18
Smith-Waterman score: 624; 59.1% identity (78.5% similar) in 181 aa overlap (10-188:1-168)

               10        20        30        40        50        60
pF1KB5 MTLAAYKEKMKELPLVSLFCSCFLADPLNKSSYKYEADTVDLNWCVISDMEVIELNKCTS
                :::: ..::.:::: ..:  .. :.:            .:::: .:.: .:
CCDS63          MKELSVLSLICSCFYTQPHPNTVYQY------------GDMEVKQLDKRAS
                        10        20                    30         

               70          80        90       100       110        
pF1KB5 GQSFEVILKPPSFDGVPE--FNASLPRRRDPSLEEIQKKLEAAEERRKYQEAELLKHLAE
       ::::::::: :: :  ::  . .: :...: ::::.::.::::::::: :::..::.:::
CCDS63 GQSFEVILKSPS-DLSPESPMLSSPPKKKDTSLEELQKRLEAAEERRKTQEAQVLKQLAE
      40        50         60        70        80        90        

      120       130       140       150       160       170        
pF1KB5 KREHEREVIQKAIEENNNFIKMAKEKLAQKMESNKENREAHLAAMLERLQEKDKHAEEVR
       .:::::::..::.:::::: ..:.:::  ::: .:: :::::::. :::.::. :: :::
CCDS63 RREHEREVLHKALEENNNFSRQAEEKLNYKMELSKEIREAHLAALRERLREKELHAAEVR
      100       110       120       130       140       150        

      180         
pF1KB5 KNKELKEEASR
       .::: .:: : 
CCDS63 RNKEQREEMSG
      160         

>>CCDS13529.1 STMN3 gene_id:50861|Hs108|chr20             (180 aa)
 initn: 700 init1: 438 opt: 562  Z-score: 434.2  bits: 87.0 E(32554): 7.3e-18
Smith-Waterman score: 663; 59.8% identity (79.4% similar) in 189 aa overlap (2-188:4-179)

                 10        20        30        40        50        
pF1KB5   MTLAAYKEKMKELPLVSLFCSCFLADPLNKSSYKYEADTVDLNWCVISDMEVIELNKC
          :..::::::::: ..::.:::: ..:  .. :.:            .:::: .:.: 
CCDS13 MASTISAYKEKMKELSVLSLICSCFYTQPHPNTVYQY------------GDMEVKQLDKR
               10        20        30                    40        

       60        70          80        90       100       110      
pF1KB5 TSGQSFEVILKPPSFDGVPE--FNASLPRRRDPSLEEIQKKLEAAEERRKYQEAELLKHL
       .:::::::::: :: :  ::  . .: :...: ::::.::.::::::::: :::..::.:
CCDS13 ASGQSFEVILKSPS-DLSPESPMLSSPPKKKDTSLEELQKRLEAAEERRKTQEAQVLKQL
       50        60         70        80        90       100       

        120       130       140       150       160       170      
pF1KB5 AEKREHEREVIQKAIEENNNFIKMAKEKLAQKMESNKENREAHLAAMLERLQEKDKHAEE
       ::.:::::::..::.:::::: ..:.:::  ::: .:: :::::::. :::.::. :: :
CCDS13 AERREHEREVLHKALEENNNFSRQAEEKLNYKMELSKEIREAHLAALRERLREKELHAAE
       110       120       130       140       150       160       

        180         
pF1KB5 VRKNKELKEEASR
       ::.::: .:: : 
CCDS13 VRRNKEQREEMSG
       170       180

>>CCDS44090.1 STMN1 gene_id:3925|Hs108|chr1               (174 aa)
 initn: 542 init1: 542 opt: 542  Z-score: 419.9  bits: 84.3 E(32554): 4.6e-17
Smith-Waterman score: 542; 71.5% identity (91.1% similar) in 123 aa overlap (48-170:4-126)

        20        30        40        50        60        70       
pF1KB5 LFCSCFLADPLNKSSYKYEADTVDLNWCVISDMEVIELNKCTSGQSFEVILKPPSFDGVP
                                     ::..: ::.: .:::.::.::.: : ..::
CCDS44                            MASSDIQVKELEKRASGQAFELILSPRSKESVP
                                          10        20        30   

        80        90       100       110       120       130       
pF1KB5 EFNASLPRRRDPSLEEIQKKLEAAEERRKYQEAELLKHLAEKREHEREVIQKAIEENNNF
       ::  : :...: ::::::::::::::::: .:::.::.::::::::.::.::::::::::
CCDS44 EFPLSPPKKKDLSLEEIQKKLEAAEERRKSHEAEVLKQLAEKREHEKEVLQKAIEENNNF
            40        50        60        70        80        90   

       140       150       160       170       180                 
pF1KB5 IKMAKEKLAQKMESNKENREAHLAAMLERLQEKDKHAEEVRKNKELKEEASR        
        :::.:::..:::.:::::::..:: ::::.::                           
CCDS44 SKMAEEKLTHKMEANKENREAQMAAKLERLREKMYFWTHGPGAHPAQISAEQSCLHSVPA
           100       110       120       130       140       150   

CCDS44 LCPALGLQSALITWSDLSHHH
           160       170    

>>CCDS56542.1 STMN2 gene_id:11075|Hs108|chr8              (187 aa)
 initn: 625 init1: 518 opt: 529  Z-score: 410.0  bits: 82.6 E(32554): 1.6e-16
Smith-Waterman score: 626; 63.5% identity (80.0% similar) in 170 aa overlap (2-170:4-160)

                 10        20        30        40        50        
pF1KB5   MTLAAYKEKMKELPLVSLFCSCFLADPLNKSSYKYEADTVDLNWCVISDMEVIELNKC
          :  ::::::::: ..::.::::  .: : . : :.            :::: ..:: 
CCDS56 MAKTAMAYKEKMKELSMLSLICSCFYPEPRNINIYTYD------------DMEVKQINKR
               10        20        30                    40        

       60        70         80        90       100       110       
pF1KB5 TSGQSFEVILKPPS-FDGVPEFNASLPRRRDPSLEEIQKKLEAAEERRKYQEAELLKHLA
       .:::.::.:::::: .. .:.  :: :...: ::::::::::::::::: :::..::.::
CCDS56 ASGQAFELILKPPSPISEAPRTLAS-PKKKDLSLEEIQKKLEAAEERRKSQEAQVLKQLA
       50        60        70         80        90       100       

       120       130       140       150       160       170       
pF1KB5 EKREHEREVIQKAIEENNNFIKMAKEKLAQKMESNKENREAHLAAMLERLQEKDKHAEEV
       :::::::::.:::.:::::: :::.:::  :::. ::::::.:::..::::::       
CCDS56 EKREHEREVLQKALEENNNFSKMAEEKLILKMEQIKENREANLAAIIERLQEKLVKFISS
       110       120       130       140       150       160       

       180                 
pF1KB5 RKNKELKEEASR        
                           
CCDS56 ELKESIESQFLELQREGEKQ
       170       180       




189 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sat Nov  5 12:24:07 2016 done: Sat Nov  5 12:24:08 2016
 Total Scan time:  2.270 Total Display time:  0.000

Function used was FASTA [36.3.4 Apr, 2011]
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