Result of FASTA (ccds) for
pF1KB6643
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB6643, 387 aa
1>>>pF1KB6643 387 - 387 aa - 387 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 10.6070+/-0.00107; mu= -2.6257+/- 0.065
mean_var=455.5308+/-93.624, 0's: 0 Z-trim(117.0): 110 B-trim: 458 in 1/53
Lambda= 0.060092
statistics sampled from 17555 (17665) to 17555 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.797), E-opt: 0.2 (0.543), width: 16
Scan time: 3.220
The best scores are: opt bits E(32554)
CCDS54183.1 SS18 gene_id:6760|Hs108|chr18 ( 387) 2899 265.0 8.3e-71
CCDS32807.1 SS18 gene_id:6760|Hs108|chr18 ( 418) 2371 219.2 5.3e-57
CCDS77168.1 SS18 gene_id:6760|Hs108|chr18 ( 395) 2224 206.5 3.5e-53
CCDS13491.1 SS18L1 gene_id:26039|Hs108|chr20 ( 396) 825 85.2 1.1e-16
>>CCDS54183.1 SS18 gene_id:6760|Hs108|chr18 (387 aa)
initn: 2899 init1: 2899 opt: 2899 Z-score: 1384.7 bits: 265.0 E(32554): 8.3e-71
Smith-Waterman score: 2899; 100.0% identity (100.0% similar) in 387 aa overlap (1-387:1-387)
10 20 30 40 50 60
pF1KB6 MSVAFAAPRQRGKGEITPAAIQKMLDDNNHLIQCIMDSQNKGKTSECSQYQQMLHTNLVY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS54 MSVAFAAPRQRGKGEITPAAIQKMLDDNNHLIQCIMDSQNKGKTSECSQYQQMLHTNLVY
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB6 LATIADSNQNMQSLLPAPPTQNMPMGPGGMNQSGPPPPPRSHNMPSDGMVGGGPPAPHMQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS54 LATIADSNQNMQSLLPAPPTQNMPMGPGGMNQSGPPPPPRSHNMPSDGMVGGGPPAPHMQ
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB6 NQMNGQMPGPNHMPMQGPGPNQLNMTNSSMNMPSSSHGSMGGYNHSVPSSQSMPVQNQMT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS54 NQMNGQMPGPNHMPMQGPGPNQLNMTNSSMNMPSSSHGSMGGYNHSVPSSQSMPVQNQMT
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB6 MSQGQPMGNYGPRPNMSMQPNQGPMMHQQPPSQQYNMPQGGGQHYQGQQPPMGMMGQVNQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS54 MSQGQPMGNYGPRPNMSMQPNQGPMMHQQPPSQQYNMPQGGGQHYQGQQPPMGMMGQVNQ
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB6 GNHMMGQRQIPPYRPPQQGPPQQYSGQEDYYGDQYSHGGQGPPEGMNQQYYPDGNSQYGQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS54 GNHMMGQRQIPPYRPPQQGPPQQYSGQEDYYGDQYSHGGQGPPEGMNQQYYPDGNSQYGQ
250 260 270 280 290 300
310 320 330 340 350 360
pF1KB6 QQDAYQGPPPQQGYPPQQQQYPGQQGYPGQQQGYGPSQGGPGPQYPNYPQGQGQQYGGYR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS54 QQDAYQGPPPQQGYPPQQQQYPGQQGYPGQQQGYGPSQGGPGPQYPNYPQGQGQQYGGYR
310 320 330 340 350 360
370 380
pF1KB6 PTQPGPPQPPQQRPYGYDQGQYGNYQQ
:::::::::::::::::::::::::::
CCDS54 PTQPGPPQPPQQRPYGYDQGQYGNYQQ
370 380
>>CCDS32807.1 SS18 gene_id:6760|Hs108|chr18 (418 aa)
initn: 2222 init1: 2222 opt: 2371 Z-score: 1136.9 bits: 219.2 E(32554): 5.3e-57
Smith-Waterman score: 2827; 92.6% identity (92.6% similar) in 418 aa overlap (1-387:1-418)
10 20 30 40 50 60
pF1KB6 MSVAFAAPRQRGKGEITPAAIQKMLDDNNHLIQCIMDSQNKGKTSECSQYQQMLHTNLVY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 MSVAFAAPRQRGKGEITPAAIQKMLDDNNHLIQCIMDSQNKGKTSECSQYQQMLHTNLVY
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB6 LATIADSNQNMQSLLPAPPTQNMPMGPGGMNQSGPPPPPRSHNMPSDGMVGGGPPAPHMQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 LATIADSNQNMQSLLPAPPTQNMPMGPGGMNQSGPPPPPRSHNMPSDGMVGGGPPAPHMQ
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB6 NQMNGQMPGPNHMPMQGPGPNQLNMTNSSMNMPSSSHGSMGGYNHSVPSSQSMPVQNQMT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 NQMNGQMPGPNHMPMQGPGPNQLNMTNSSMNMPSSSHGSMGGYNHSVPSSQSMPVQNQMT
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB6 MSQGQPMGNYGPRPNMSMQPNQGPMMHQQPPSQQYNMPQGGGQHYQGQQPPMGMMGQVNQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 MSQGQPMGNYGPRPNMSMQPNQGPMMHQQPPSQQYNMPQGGGQHYQGQQPPMGMMGQVNQ
190 200 210 220 230 240
250 260 270 280 290
pF1KB6 GNHMMGQRQIPPYRPPQQGPPQQYSGQEDYYGDQYSHGGQGPPEGMNQQYYPDG------
::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 GNHMMGQRQIPPYRPPQQGPPQQYSGQEDYYGDQYSHGGQGPPEGMNQQYYPDGHNDYGY
250 260 270 280 290 300
300 310 320
pF1KB6 -------------------------NSQYGQQQDAYQGPPPQQGYPPQQQQYPGQQGYPG
:::::::::::::::::::::::::::::::::::
CCDS32 QQPSYPEQGYDRPYEDSSQHYYEGGNSQYGQQQDAYQGPPPQQGYPPQQQQYPGQQGYPG
310 320 330 340 350 360
330 340 350 360 370 380
pF1KB6 QQQGYGPSQGGPGPQYPNYPQGQGQQYGGYRPTQPGPPQPPQQRPYGYDQGQYGNYQQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 QQQGYGPSQGGPGPQYPNYPQGQGQQYGGYRPTQPGPPQPPQQRPYGYDQGQYGNYQQ
370 380 390 400 410
>>CCDS77168.1 SS18 gene_id:6760|Hs108|chr18 (395 aa)
initn: 2075 init1: 2075 opt: 2224 Z-score: 1068.3 bits: 206.5 E(32554): 3.5e-53
Smith-Waterman score: 2680; 92.2% identity (92.2% similar) in 395 aa overlap (24-387:1-395)
10 20 30 40 50 60
pF1KB6 MSVAFAAPRQRGKGEITPAAIQKMLDDNNHLIQCIMDSQNKGKTSECSQYQQMLHTNLVY
:::::::::::::::::::::::::::::::::::::
CCDS77 MLDDNNHLIQCIMDSQNKGKTSECSQYQQMLHTNLVY
10 20 30
70 80 90 100 110 120
pF1KB6 LATIADSNQNMQSLLPAPPTQNMPMGPGGMNQSGPPPPPRSHNMPSDGMVGGGPPAPHMQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS77 LATIADSNQNMQSLLPAPPTQNMPMGPGGMNQSGPPPPPRSHNMPSDGMVGGGPPAPHMQ
40 50 60 70 80 90
130 140 150 160 170 180
pF1KB6 NQMNGQMPGPNHMPMQGPGPNQLNMTNSSMNMPSSSHGSMGGYNHSVPSSQSMPVQNQMT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS77 NQMNGQMPGPNHMPMQGPGPNQLNMTNSSMNMPSSSHGSMGGYNHSVPSSQSMPVQNQMT
100 110 120 130 140 150
190 200 210 220 230 240
pF1KB6 MSQGQPMGNYGPRPNMSMQPNQGPMMHQQPPSQQYNMPQGGGQHYQGQQPPMGMMGQVNQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS77 MSQGQPMGNYGPRPNMSMQPNQGPMMHQQPPSQQYNMPQGGGQHYQGQQPPMGMMGQVNQ
160 170 180 190 200 210
250 260 270 280 290
pF1KB6 GNHMMGQRQIPPYRPPQQGPPQQYSGQEDYYGDQYSHGGQGPPEGMNQQYYPDG------
::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS77 GNHMMGQRQIPPYRPPQQGPPQQYSGQEDYYGDQYSHGGQGPPEGMNQQYYPDGHNDYGY
220 230 240 250 260 270
300 310 320
pF1KB6 -------------------------NSQYGQQQDAYQGPPPQQGYPPQQQQYPGQQGYPG
:::::::::::::::::::::::::::::::::::
CCDS77 QQPSYPEQGYDRPYEDSSQHYYEGGNSQYGQQQDAYQGPPPQQGYPPQQQQYPGQQGYPG
280 290 300 310 320 330
330 340 350 360 370 380
pF1KB6 QQQGYGPSQGGPGPQYPNYPQGQGQQYGGYRPTQPGPPQPPQQRPYGYDQGQYGNYQQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS77 QQQGYGPSQGGPGPQYPNYPQGQGQQYGGYRPTQPGPPQPPQQRPYGYDQGQYGNYQQ
340 350 360 370 380 390
>>CCDS13491.1 SS18L1 gene_id:26039|Hs108|chr20 (396 aa)
initn: 932 init1: 561 opt: 825 Z-score: 412.8 bits: 85.2 E(32554): 1.1e-16
Smith-Waterman score: 1431; 54.7% identity (71.6% similar) in 419 aa overlap (1-387:1-396)
10 20 30 40 50 60
pF1KB6 MSVAFAAPRQRGKGEITPAAIQKMLDDNNHLIQCIMDSQNKGKTSECSQYQQMLHTNLVY
::::::. : :::::.: .::::::.:.::::::.. :.::::.::.::::.:: ::::
CCDS13 MSVAFASARPRGKGEVTQQTIQKMLDENHHLIQCILEYQSKGKTAECTQYQQILHRNLVY
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB6 LATIADSNQNMQSLLPAPPTQNMPMGPGGMNQSGPPPPPRSHNMPSDGMVGGGPPAPHMQ
::::::::::::::::::::::: .:::...::: .:.. ::.. : ::. .:
CCDS13 LATIADSNQNMQSLLPAPPTQNMNLGPGALTQSGSSQGLHSQGSLSDAISTGLPPSSLLQ
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB6 NQMNGQMPGPNHMPMQGPGPNQLNMTNSSMNMPSSSHGSMGGYNHSVPSSQSMPVQNQMT
.:... ::.:. :: .:: : :. :.. : ::.:. :.::..:.:.: :
CCDS13 GQIGN---GPSHVSMQQTAPNTLPTTSMSISGP--------GYSHAGPASQGVPMQGQGT
130 140 150 160
190 200 210 220 230 240
pF1KB6 MSQGQPMGNYGPRPNMSMQPNQGPMMHQQPPSQQYNMPQGGGQHYQGQQPPMGMMGQVNQ
.::: : :..:: : ::.:: ...:. :::.::::::. ..:::: .:
CCDS13 ------IGNYVSRTNINMQSNPVSMMQQQAATSHYSSAQGGSQHYQGQSS-IAMMGQGSQ
170 180 190 200 210 220
250 260 270 280 290
pF1KB6 GNHMMGQRQIPPYRPPQQGPPQQYSGQEDYYGDQYSHGGQGPPEGMNQQYYPDG------
:. ::::: . :::: ::: ::: :::.:::.::::. :: : :.:::::::
CCDS13 GSSMMGQRPMAPYRPSQQGSSQQYLGQEEYYGEQYSHS-QGAAEPMGQQYYPDGHGDYAY
230 240 250 260 270 280
300 310 320
pF1KB6 -------------------------NSQYGQQQDAYQ-GPPPQQGYPPQQQQYPGQQGYP
::::.::: .:: : :: : .:::::.::.::
CCDS13 QQSSYTEQSYDRSFEESTQHYYEGGNSQYSQQQAGYQQGAAQQQTY--SQQQYPSQQSYP
290 300 310 320 330
330 340 350 360 370 380
pF1KB6 GQQQGYGPSQGGPGPQYPNYPQGQGQQYGGYRPTQPGPPQPPQQRPYGYDQGQYGNYQQ
::::::: .::.:. :::.: ::::::::.:: : .: . :::::::.:::::::::
CCDS13 GQQQGYGSAQGAPS-QYPGYQQGQGQQYGSYRAPQTAP-SAQQQRPYGYEQGQYGNYQQ
340 350 360 370 380 390
387 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Sat Nov 5 11:13:32 2016 done: Sat Nov 5 11:13:33 2016
Total Scan time: 3.220 Total Display time: 0.000
Function used was FASTA [36.3.4 Apr, 2011]