Result of FASTA (omim) for pF1KB6607
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB6607, 409 aa
  1>>>pF1KB6607 409 - 409 aa - 409 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 11.0985+/-0.000401; mu= -7.7901+/- 0.025
 mean_var=329.3157+/-65.959, 0's: 0 Z-trim(121.8): 10  B-trim: 64 in 1/60
 Lambda= 0.070675
 statistics sampled from 38874 (38886) to 38874 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.745), E-opt: 0.2 (0.456), width:  16
 Scan time:  6.400

The best scores are:                                      opt bits E(85289)
NP_002865 (OMIM: 600062) UV excision repair protei ( 409) 2597 278.1 2.7e-74
NP_001231642 (OMIM: 600062) UV excision repair pro ( 388) 2459 264.0 4.5e-70
NP_001231653 (OMIM: 600062) UV excision repair pro ( 337) 2150 232.5 1.2e-60
NP_001257292 (OMIM: 600061) UV excision repair pro ( 308)  467 60.8 5.2e-09
NP_001257291 (OMIM: 600061) UV excision repair pro ( 362)  467 60.9 5.9e-09
NP_005044 (OMIM: 600061) UV excision repair protei ( 363)  467 60.9 5.9e-09


>>NP_002865 (OMIM: 600062) UV excision repair protein RA  (409 aa)
 initn: 2597 init1: 2597 opt: 2597  Z-score: 1454.7  bits: 278.1 E(85289): 2.7e-74
Smith-Waterman score: 2597; 100.0% identity (100.0% similar) in 409 aa overlap (1-409:1-409)

               10        20        30        40        50        60
pF1KB6 MQVTLKTLQQQTFKIDIDPEETVKALKEKIESEKGKDAFPVAGQKLIYAGKILNDDTALK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_002 MQVTLKTLQQQTFKIDIDPEETVKALKEKIESEKGKDAFPVAGQKLIYAGKILNDDTALK
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB6 EYKIDEKNFVVVMVTKPKAVSTPAPATTQQSAPASTTAVTSSTTTTVAQAPTPVPALAPT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_002 EYKIDEKNFVVVMVTKPKAVSTPAPATTQQSAPASTTAVTSSTTTTVAQAPTPVPALAPT
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB6 STPASITPASATASSEPAPASAAKQEKPAEKPAETPVATSPTATDSTSGDSSRSNLFEDA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_002 STPASITPASATASSEPAPASAAKQEKPAEKPAETPVATSPTATDSTSGDSSRSNLFEDA
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB6 TSALVTGQSYENMVTEIMSMGYEREQVIAALRASFNNPDRAVEYLLMGIPGDRESQAVVD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_002 TSALVTGQSYENMVTEIMSMGYEREQVIAALRASFNNPDRAVEYLLMGIPGDRESQAVVD
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB6 PPQAASTGAPQSSAVAAAAATTTATTTTTSSGGHPLEFLRNQPQFQQMRQIIQQNPSLLP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_002 PPQAASTGAPQSSAVAAAAATTTATTTTTSSGGHPLEFLRNQPQFQQMRQIIQQNPSLLP
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KB6 ALLQQIGRENPQLLQQISQHQEHFIQMLNEPVQEAGGQGGGGGGGSGGIAEAGSGHMNYI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_002 ALLQQIGRENPQLLQQISQHQEHFIQMLNEPVQEAGGQGGGGGGGSGGIAEAGSGHMNYI
              310       320       330       340       350       360

              370       380       390       400         
pF1KB6 QVTPQEKEAIERLKALGFPEGLVIQAYFACEKNENLAANFLLQQNFDED
       :::::::::::::::::::::::::::::::::::::::::::::::::
NP_002 QVTPQEKEAIERLKALGFPEGLVIQAYFACEKNENLAANFLLQQNFDED
              370       380       390       400         

>>NP_001231642 (OMIM: 600062) UV excision repair protein  (388 aa)
 initn: 2459 init1: 2459 opt: 2459  Z-score: 1379.0  bits: 264.0 E(85289): 4.5e-70
Smith-Waterman score: 2459; 100.0% identity (100.0% similar) in 387 aa overlap (23-409:2-388)

               10        20        30        40        50        60
pF1KB6 MQVTLKTLQQQTFKIDIDPEETVKALKEKIESEKGKDAFPVAGQKLIYAGKILNDDTALK
                             ::::::::::::::::::::::::::::::::::::::
NP_001                      MVKALKEKIESEKGKDAFPVAGQKLIYAGKILNDDTALK
                                    10        20        30         

               70        80        90       100       110       120
pF1KB6 EYKIDEKNFVVVMVTKPKAVSTPAPATTQQSAPASTTAVTSSTTTTVAQAPTPVPALAPT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 EYKIDEKNFVVVMVTKPKAVSTPAPATTQQSAPASTTAVTSSTTTTVAQAPTPVPALAPT
      40        50        60        70        80        90         

              130       140       150       160       170       180
pF1KB6 STPASITPASATASSEPAPASAAKQEKPAEKPAETPVATSPTATDSTSGDSSRSNLFEDA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 STPASITPASATASSEPAPASAAKQEKPAEKPAETPVATSPTATDSTSGDSSRSNLFEDA
     100       110       120       130       140       150         

              190       200       210       220       230       240
pF1KB6 TSALVTGQSYENMVTEIMSMGYEREQVIAALRASFNNPDRAVEYLLMGIPGDRESQAVVD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 TSALVTGQSYENMVTEIMSMGYEREQVIAALRASFNNPDRAVEYLLMGIPGDRESQAVVD
     160       170       180       190       200       210         

              250       260       270       280       290       300
pF1KB6 PPQAASTGAPQSSAVAAAAATTTATTTTTSSGGHPLEFLRNQPQFQQMRQIIQQNPSLLP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 PPQAASTGAPQSSAVAAAAATTTATTTTTSSGGHPLEFLRNQPQFQQMRQIIQQNPSLLP
     220       230       240       250       260       270         

              310       320       330       340       350       360
pF1KB6 ALLQQIGRENPQLLQQISQHQEHFIQMLNEPVQEAGGQGGGGGGGSGGIAEAGSGHMNYI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 ALLQQIGRENPQLLQQISQHQEHFIQMLNEPVQEAGGQGGGGGGGSGGIAEAGSGHMNYI
     280       290       300       310       320       330         

              370       380       390       400         
pF1KB6 QVTPQEKEAIERLKALGFPEGLVIQAYFACEKNENLAANFLLQQNFDED
       :::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 QVTPQEKEAIERLKALGFPEGLVIQAYFACEKNENLAANFLLQQNFDED
     340       350       360       370       380        

>>NP_001231653 (OMIM: 600062) UV excision repair protein  (337 aa)
 initn: 2150 init1: 2150 opt: 2150  Z-score: 1209.6  bits: 232.5 E(85289): 1.2e-60
Smith-Waterman score: 2150; 100.0% identity (100.0% similar) in 337 aa overlap (73-409:1-337)

             50        60        70        80        90       100  
pF1KB6 GQKLIYAGKILNDDTALKEYKIDEKNFVVVMVTKPKAVSTPAPATTQQSAPASTTAVTSS
                                     ::::::::::::::::::::::::::::::
NP_001                               MVTKPKAVSTPAPATTQQSAPASTTAVTSS
                                             10        20        30

            110       120       130       140       150       160  
pF1KB6 TTTTVAQAPTPVPALAPTSTPASITPASATASSEPAPASAAKQEKPAEKPAETPVATSPT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 TTTTVAQAPTPVPALAPTSTPASITPASATASSEPAPASAAKQEKPAEKPAETPVATSPT
               40        50        60        70        80        90

            170       180       190       200       210       220  
pF1KB6 ATDSTSGDSSRSNLFEDATSALVTGQSYENMVTEIMSMGYEREQVIAALRASFNNPDRAV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 ATDSTSGDSSRSNLFEDATSALVTGQSYENMVTEIMSMGYEREQVIAALRASFNNPDRAV
              100       110       120       130       140       150

            230       240       250       260       270       280  
pF1KB6 EYLLMGIPGDRESQAVVDPPQAASTGAPQSSAVAAAAATTTATTTTTSSGGHPLEFLRNQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 EYLLMGIPGDRESQAVVDPPQAASTGAPQSSAVAAAAATTTATTTTTSSGGHPLEFLRNQ
              160       170       180       190       200       210

            290       300       310       320       330       340  
pF1KB6 PQFQQMRQIIQQNPSLLPALLQQIGRENPQLLQQISQHQEHFIQMLNEPVQEAGGQGGGG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 PQFQQMRQIIQQNPSLLPALLQQIGRENPQLLQQISQHQEHFIQMLNEPVQEAGGQGGGG
              220       230       240       250       260       270

            350       360       370       380       390       400  
pF1KB6 GGGSGGIAEAGSGHMNYIQVTPQEKEAIERLKALGFPEGLVIQAYFACEKNENLAANFLL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 GGGSGGIAEAGSGHMNYIQVTPQEKEAIERLKALGFPEGLVIQAYFACEKNENLAANFLL
              280       290       300       310       320       330

              
pF1KB6 QQNFDED
       :::::::
NP_001 QQNFDED
              

>>NP_001257292 (OMIM: 600061) UV excision repair protein  (308 aa)
 initn: 965 init1: 409 opt: 467  Z-score: 282.7  bits: 60.8 E(85289): 5.2e-09
Smith-Waterman score: 1054; 50.9% identity (64.9% similar) in 407 aa overlap (3-409:5-308)

                 10        20        30        40        50        
pF1KB6   MQVTLKTLQQQTFKIDIDPEETVKALKEKIESEKGKDAFPVAGQKLIYAGKILNDDTA
           .:::::::::::: ..:.::::.::::::.:::.:::::::::::::::::.::. 
NP_001 MAVTITLKTLQQQTFKIRMEPDETVKVLKEKIEAEKGRDAFPVAGQKLIYAGKILSDDVP
               10        20        30        40        50        60

       60        70        80        90       100       110        
pF1KB6 LKEYKIDEKNFVVVMVTKPKAVSTPAPATTQQSAPASTTAVTSSTTTTVAQAPTPVPALA
       ...:.::::::::::::: ::           :::                 :   :. :
NP_001 IRDYRIDEKNFVVVMVTKTKA-------GQGTSAP-----------------PEASPTAA
               70        80                                90      

      120       130       140       150       160       170        
pF1KB6 PTSTPASITPASATASSEPAPASAAKQEKPAEKPAETPVATSPTATDSTSGDSSRSNLFE
       : :. .:. :: ... :.: :: : ....:.:. : :    : ...  .::.:.:    :
NP_001 PESS-TSFPPAPTSGMSHPPPA-AREDKSPSEESAPTTSPESVSGSVPSSGSSGRE---E
        100        110        120       130       140       150    

      180       190       200       210       220       230        
pF1KB6 DATSALVTGQSYENMVTEIMSMGYEREQVIAALRASFNNPDRAVEYLLMGIPGDRESQAV
       ::.:.::::. ::.:.:::::::::::.:.::::::.::: ::::::: ::::. :    
NP_001 DAASTLVTGSEYETMLTEIMSMGYERERVVAALRASYNNPHRAVEYLLTGIPGSPE----
             160       170       180       190       200           

      240       250       260       270       280       290        
pF1KB6 VDPPQAASTGAPQSSAVAAAAATTTATTTTTSSGGHPLEFLRNQPQFQQMRQIIQQNPSL
         : .    :. : : :.   :: .:       : .::::::.:::::.:::.:::::.:
NP_001 --PEH----GSVQESQVSEQPATEAA-------GENPLEFLRDQPQFQNMRQVIQQNPAL
         210           220              230       240       250    

      300       310       320       330       340       350        
pF1KB6 LPALLQQIGRENPQLLQQISQHQEHFIQMLNEPVQEAGGQGGGGGGGSGGIAEAGSGHMN
       :::::::.:.:::::::                                           
NP_001 LPALLQQLGQENPQLLQ-------------------------------------------
          260       270                                            

      360       370       380       390       400         
pF1KB6 YIQVTPQEKEAIERLKALGFPEGLVIQAYFACEKNENLAANFLLQQNFDED
                     ::::::::.:::::::::::::::::::::.::::..
NP_001 --------------LKALGFPESLVIQAYFACEKNENLAANFLLSQNFDDE
                           280       290       300        

>>NP_001257291 (OMIM: 600061) UV excision repair protein  (362 aa)
 initn: 1398 init1: 400 opt: 467  Z-score: 281.7  bits: 60.9 E(85289): 5.9e-09
Smith-Waterman score: 1355; 59.2% identity (75.2% similar) in 407 aa overlap (3-409:5-362)

                 10        20        30        40        50        
pF1KB6   MQVTLKTLQQQTFKIDIDPEETVKALKEKIESEKGKDAFPVAGQKLIYAGKILNDDTA
           .:::::::::::: ..:.::::.::::::.:::.:::::::::::::::::.::. 
NP_001 MAVTITLKTLQQQTFKIRMEPDETVKVLKEKIEAEKGRDAFPVAGQKLIYAGKILSDDVP
               10        20        30        40        50        60

       60        70        80        90       100       110        
pF1KB6 LKEYKIDEKNFVVVMVTKPKAVSTPAPATTQQSAPASTTAVTSSTTTTVAQAPTPVPALA
       ...:.::::::::::::: ::           :::                 :   :. :
NP_001 IRDYRIDEKNFVVVMVTKTKA-------GQGTSAP-----------------PEASPTAA
               70        80                                90      

      120       130       140       150       160       170        
pF1KB6 PTSTPASITPASATASSEPAPASAAKQEKPAEKPAETPVATSPTATDSTSGDSSRSNLFE
       : :. .:. :: ... :.: :: : ....:.:. : :    : ...  .::.:.:    :
NP_001 PESS-TSFPPAPTSGMSHPPPA-AREDKSPSEESAPTTSPESVSGSVPSSGSSGRE---E
        100        110        120       130       140       150    

      180       190       200       210       220       230        
pF1KB6 DATSALVTGQSYENMVTEIMSMGYEREQVIAALRASFNNPDRAVEYLLMGIPGDRESQAV
       ::.:.::::. ::.:.:::::::::::.:.::::::.::: ::::::: ::::. :    
NP_001 DAASTLVTGSEYETMLTEIMSMGYERERVVAALRASYNNPHRAVEYLLTGIPGSPE----
             160       170       180       190       200           

      240       250       260       270       280       290        
pF1KB6 VDPPQAASTGAPQSSAVAAAAATTTATTTTTSSGGHPLEFLRNQPQFQQMRQIIQQNPSL
         : .    :. : : :.   :        : .: .::::::.:::::.:::.:::::.:
NP_001 --PEH----GSVQESQVSEQPA--------TEAGENPLEFLRDQPQFQNMRQVIQQNPAL
         210           220               230       240       250   

      300       310       320       330       340       350        
pF1KB6 LPALLQQIGRENPQLLQQISQHQEHFIQMLNEPVQEAGGQGGGGGGGSGGIAEAGSGHMN
       :::::::.:.::::::::::.:::.::::::::  : .  .   :   :.:.: .  .::
NP_001 LPALLQQLGQENPQLLQQISRHQEQFIQMLNEPPGELADISDVEGE-VGAIGEEAP-QMN
           260       270       280       290        300        310 

      360       370       380       390       400         
pF1KB6 YIQVTPQEKEAIERLKALGFPEGLVIQAYFACEKNENLAANFLLQQNFDED
       ::::::::::::::::::::::.:::::::::::::::::::::.::::..
NP_001 YIQVTPQEKEAIERLKALGFPESLVIQAYFACEKNENLAANFLLSQNFDDE
             320       330       340       350       360  

>>NP_005044 (OMIM: 600061) UV excision repair protein RA  (363 aa)
 initn: 1399 init1: 400 opt: 467  Z-score: 281.7  bits: 60.9 E(85289): 5.9e-09
Smith-Waterman score: 1361; 59.5% identity (75.4% similar) in 407 aa overlap (3-409:5-363)

                 10        20        30        40        50        
pF1KB6   MQVTLKTLQQQTFKIDIDPEETVKALKEKIESEKGKDAFPVAGQKLIYAGKILNDDTA
           .:::::::::::: ..:.::::.::::::.:::.:::::::::::::::::.::. 
NP_005 MAVTITLKTLQQQTFKIRMEPDETVKVLKEKIEAEKGRDAFPVAGQKLIYAGKILSDDVP
               10        20        30        40        50        60

       60        70        80        90       100       110        
pF1KB6 LKEYKIDEKNFVVVMVTKPKAVSTPAPATTQQSAPASTTAVTSSTTTTVAQAPTPVPALA
       ...:.::::::::::::: ::           :::                 :   :. :
NP_005 IRDYRIDEKNFVVVMVTKTKA-------GQGTSAP-----------------PEASPTAA
               70        80                                90      

      120       130       140       150       160       170        
pF1KB6 PTSTPASITPASATASSEPAPASAAKQEKPAEKPAETPVATSPTATDSTSGDSSRSNLFE
       : :. .:. :: ... :.: :: : ....:.:. : :    : ...  .::.:.:    :
NP_005 PESS-TSFPPAPTSGMSHPPPA-AREDKSPSEESAPTTSPESVSGSVPSSGSSGRE---E
        100        110        120       130       140       150    

      180       190       200       210       220       230        
pF1KB6 DATSALVTGQSYENMVTEIMSMGYEREQVIAALRASFNNPDRAVEYLLMGIPGDRESQAV
       ::.:.::::. ::.:.:::::::::::.:.::::::.::: ::::::: ::::. :    
NP_005 DAASTLVTGSEYETMLTEIMSMGYERERVVAALRASYNNPHRAVEYLLTGIPGSPE----
             160       170       180       190       200           

      240       250       260       270       280       290        
pF1KB6 VDPPQAASTGAPQSSAVAAAAATTTATTTTTSSGGHPLEFLRNQPQFQQMRQIIQQNPSL
         : .    :. : : :.   :: .:       : .::::::.:::::.:::.:::::.:
NP_005 --PEH----GSVQESQVSEQPATEAA-------GENPLEFLRDQPQFQNMRQVIQQNPAL
         210           220              230       240       250    

      300       310       320       330       340       350        
pF1KB6 LPALLQQIGRENPQLLQQISQHQEHFIQMLNEPVQEAGGQGGGGGGGSGGIAEAGSGHMN
       :::::::.:.::::::::::.:::.::::::::  : .  .   :   :.:.: .  .::
NP_005 LPALLQQLGQENPQLLQQISRHQEQFIQMLNEPPGELADISDVEGE-VGAIGEEAP-QMN
          260       270       280       290       300         310  

      360       370       380       390       400         
pF1KB6 YIQVTPQEKEAIERLKALGFPEGLVIQAYFACEKNENLAANFLLQQNFDED
       ::::::::::::::::::::::.:::::::::::::::::::::.::::..
NP_005 YIQVTPQEKEAIERLKALGFPESLVIQAYFACEKNENLAANFLLSQNFDDE
            320       330       340       350       360   




409 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sat Nov  5 11:04:27 2016 done: Sat Nov  5 11:04:28 2016
 Total Scan time:  6.400 Total Display time:  0.010

Function used was FASTA [36.3.4 Apr, 2011]
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