Result of FASTA (omim) for pF1KB5909
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB5909, 504 aa
  1>>>pF1KB5909 504 - 504 aa - 504 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 6.3243+/-0.000445; mu= 14.5015+/- 0.028
 mean_var=173.4687+/-36.973, 0's: 0 Z-trim(114.6): 429  B-trim: 652 in 1/55
 Lambda= 0.097379
 statistics sampled from 23954 (24539) to 23954 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.646), E-opt: 0.2 (0.288), width:  16
 Scan time:  8.490

The best scores are:                                      opt bits E(85289)
NP_055317 (OMIM: 608330) pre-mRNA-processing facto ( 504) 3297 476.2 9.6e-134
NP_001309196 (OMIM: 607795,615922) U4/U6 small nuc ( 279)  405 69.6 1.4e-11
NP_001309195 (OMIM: 607795,615922) U4/U6 small nuc ( 279)  405 69.6 1.4e-11
NP_001231855 (OMIM: 607795,615922) U4/U6 small nuc ( 521)  405 69.9   2e-11
NP_004688 (OMIM: 607795,615922) U4/U6 small nuclea ( 522)  405 69.9   2e-11
NP_008882 (OMIM: 601787) transcription initiation  ( 800)  397 69.0 5.6e-11
NP_758440 (OMIM: 614784,615973) POC1 centriolar pr ( 478)  382 66.7 1.8e-10
NP_001186706 (OMIM: 614784,615973) POC1 centriolar ( 436)  368 64.6 6.5e-10
NP_060058 (OMIM: 609012) WD repeat-containing prot ( 334)  353 62.4 2.4e-09
XP_005272220 (OMIM: 609012) PREDICTED: WD repeat-c ( 334)  353 62.4 2.4e-09
NP_438172 (OMIM: 609012) WD repeat-containing prot ( 334)  353 62.4 2.4e-09
XP_016860391 (OMIM: 612173) PREDICTED: sperm-assoc ( 323)  341 60.7 7.5e-09
XP_011510137 (OMIM: 612173) PREDICTED: sperm-assoc ( 323)  341 60.7 7.5e-09
XP_016860389 (OMIM: 612173) PREDICTED: sperm-assoc ( 323)  341 60.7 7.5e-09
XP_016860390 (OMIM: 612173) PREDICTED: sperm-assoc ( 323)  341 60.7 7.5e-09
XP_016860387 (OMIM: 612173) PREDICTED: sperm-assoc ( 390)  341 60.8 8.5e-09
XP_011531865 (OMIM: 614783,614813) PREDICTED: POC1 ( 246)  338 60.1 8.5e-09
XP_011531867 (OMIM: 614783,614813) PREDICTED: POC1 ( 246)  338 60.1 8.5e-09
XP_011531866 (OMIM: 614783,614813) PREDICTED: POC1 ( 246)  338 60.1 8.5e-09
XP_016860385 (OMIM: 612173) PREDICTED: sperm-assoc ( 512)  341 60.9   1e-08
XP_016860386 (OMIM: 612173) PREDICTED: sperm-assoc ( 512)  341 60.9   1e-08
XP_011510125 (OMIM: 612173) PREDICTED: sperm-assoc ( 528)  341 61.0   1e-08
XP_011510124 (OMIM: 612173) PREDICTED: sperm-assoc ( 528)  341 61.0   1e-08
XP_011510123 (OMIM: 612173) PREDICTED: sperm-assoc ( 537)  341 61.0   1e-08
XP_011510121 (OMIM: 612173) PREDICTED: sperm-assoc ( 577)  341 61.0 1.1e-08
XP_011510116 (OMIM: 612173) PREDICTED: sperm-assoc ( 600)  341 61.0 1.1e-08
NP_078808 (OMIM: 612173) sperm-associated antigen  ( 631)  341 61.0 1.1e-08
NP_005877 (OMIM: 602703,616212) katanin p80 WD40 r ( 655)  332 59.8 2.8e-08
XP_016878353 (OMIM: 602703,616212) PREDICTED: kata ( 655)  332 59.8 2.8e-08
XP_016878352 (OMIM: 602703,616212) PREDICTED: kata ( 655)  332 59.8 2.8e-08
XP_006721186 (OMIM: 602703,616212) PREDICTED: kata ( 658)  332 59.8 2.8e-08
XP_016878351 (OMIM: 602703,616212) PREDICTED: kata ( 672)  332 59.8 2.8e-08
XP_005255829 (OMIM: 602703,616212) PREDICTED: kata ( 672)  332 59.8 2.8e-08
XP_016878350 (OMIM: 602703,616212) PREDICTED: kata ( 672)  332 59.8 2.8e-08
XP_016878349 (OMIM: 602703,616212) PREDICTED: kata ( 675)  332 59.8 2.8e-08
XP_011521112 (OMIM: 602703,616212) PREDICTED: kata ( 675)  332 59.8 2.8e-08
XP_006721184 (OMIM: 602703,616212) PREDICTED: kata ( 675)  332 59.8 2.8e-08
XP_006721185 (OMIM: 602703,616212) PREDICTED: kata ( 675)  332 59.8 2.8e-08
XP_011530390 (OMIM: 606278) PREDICTED: F-box/WD re ( 540)  324 58.6 5.4e-08
NP_001013433 (OMIM: 606278) F-box/WD repeat-contai ( 589)  324 58.6 5.7e-08
NP_060785 (OMIM: 606278) F-box/WD repeat-containin ( 627)  324 58.7 5.9e-08
XP_011530389 (OMIM: 606278) PREDICTED: F-box/WD re ( 679)  324 58.7 6.2e-08
XP_011530388 (OMIM: 606278) PREDICTED: F-box/WD re ( 679)  324 58.7 6.2e-08
XP_016863851 (OMIM: 606278) PREDICTED: F-box/WD re ( 707)  324 58.7 6.4e-08
NP_361014 (OMIM: 606278) F-box/WD repeat-containin ( 707)  324 58.7 6.4e-08
XP_011530387 (OMIM: 606278) PREDICTED: F-box/WD re ( 707)  324 58.7 6.4e-08
XP_011530385 (OMIM: 606278) PREDICTED: F-box/WD re ( 707)  324 58.7 6.4e-08
XP_011530386 (OMIM: 606278) PREDICTED: F-box/WD re ( 707)  324 58.7 6.4e-08
NP_001269467 (OMIM: 139380,613065,616973) guanine  ( 240)  307 55.7 1.7e-07
NP_001269468 (OMIM: 139380,613065,616973) guanine  ( 340)  307 55.9 2.1e-07


>>NP_055317 (OMIM: 608330) pre-mRNA-processing factor 19  (504 aa)
 initn: 3297 init1: 3297 opt: 3297  Z-score: 2522.1  bits: 476.2 E(85289): 9.6e-134
Smith-Waterman score: 3297; 100.0% identity (100.0% similar) in 504 aa overlap (1-504:1-504)

               10        20        30        40        50        60
pF1KB5 MSLICSISNEVPEHPCVSPVSNHVYERRLIEKYIAENGTDPINNQPLSEEQLIDIKVAHP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_055 MSLICSISNEVPEHPCVSPVSNHVYERRLIEKYIAENGTDPINNQPLSEEQLIDIKVAHP
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB5 IRPKPPSATSIPAILKALQDEWDAVMLHSFTLRQQLQTTRQELSHALYQHDAACRVIARL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_055 IRPKPPSATSIPAILKALQDEWDAVMLHSFTLRQQLQTTRQELSHALYQHDAACRVIARL
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB5 TKEVTAAREALATLKPQAGLIVPQAVPSSQPSVVGAGEPMDLGELVGMTPEIIQKLQDKA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_055 TKEVTAAREALATLKPQAGLIVPQAVPSSQPSVVGAGEPMDLGELVGMTPEIIQKLQDKA
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB5 TVLTTERKKRGKTVPEELVKPEELSKYRQVASHVGLHSASIPGILALDLCPSDTNKILTG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_055 TVLTTERKKRGKTVPEELVKPEELSKYRQVASHVGLHSASIPGILALDLCPSDTNKILTG
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB5 GADKNVVVFDKSSEQILATLKGHTKKVTSVVFHPSQDLVFSASPDATIRIWSVPNASCVQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_055 GADKNVVVFDKSSEQILATLKGHTKKVTSVVFHPSQDLVFSASPDATIRIWSVPNASCVQ
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KB5 VVRAHESAVTGLSLHATGDYLLSSSDDQYWAFSDIQTGRVLTKVTDETSGCSLTCAQFHP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_055 VVRAHESAVTGLSLHATGDYLLSSSDDQYWAFSDIQTGRVLTKVTDETSGCSLTCAQFHP
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KB5 DGLIFGTGTMDSQIKIWDLKERTNVANFPGHSGPITSIAFSENGYYLATAADDSSVKLWD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_055 DGLIFGTGTMDSQIKIWDLKERTNVANFPGHSGPITSIAFSENGYYLATAADDSSVKLWD
              370       380       390       400       410       420

              430       440       450       460       470       480
pF1KB5 LRKLKNFKTLQLDNNFEVKSLIFDQSGTYLALGGTDVQIYICKQWTEILHFTEHSGLTTG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_055 LRKLKNFKTLQLDNNFEVKSLIFDQSGTYLALGGTDVQIYICKQWTEILHFTEHSGLTTG
              430       440       450       460       470       480

              490       500    
pF1KB5 VAFGHHAKFIASTGMDRSLKFYSL
       ::::::::::::::::::::::::
NP_055 VAFGHHAKFIASTGMDRSLKFYSL
              490       500    

>>NP_001309196 (OMIM: 607795,615922) U4/U6 small nuclear  (279 aa)
 initn: 410 init1: 204 opt: 405  Z-score: 329.2  bits: 69.6 E(85289): 1.4e-11
Smith-Waterman score: 405; 27.1% identity (60.5% similar) in 258 aa overlap (256-502:22-276)

         230       240       250       260       270       280     
pF1KB5 ALDLCPSDTNKILTGGADKNVVVFDKSSEQILATLKGHTKKVTSVVFHPSQDLVF-----
                                     .: ::.::. .: ..::::.. . .     
NP_001          MLSFVFDRSGLCKLWSVPDCNLLHTLRGHNTNVGAIVFHPKSTVSLDPKDV
                        10        20        30        40        50 

                 290       300       310       320       330       
pF1KB5 ---SASPDATIRIWSVPNASCVQVVRAHESAVTGLSLHATGDYLLSSSDDQYWAFSDIQT
          : . :.....::. .   :  ...:   :. .  : .: .: ..  :. : . :...
NP_001 NLASCAADGSVKLWSLDSDEPVADIEGHTVRVARVMWHPSGRFLGTTCYDRSWRLWDLEA
              60        70        80        90       100       110 

       340       350       360       370       380       390       
pF1KB5 GRVLTKVTDETSGCSLTCAQFHPDGLIFGTGTMDSQIKIWDLKERTNVANFPGHSGPITS
        . . .   .. :  .    :: :: . ::: .:.  ..:::.    .  . ::   : .
NP_001 QEEILHQEGHSMG--VYDIAFHQDGSLAGTGGLDAFGRVWDLRTGRCIMFLEGHLKEIYG
             120         130       140       150       160         

       400       410       420       430       440        450      
pF1KB5 IAFSENGYYLATAADDSSVKLWDLRKLKNFKTLQLDNNFEVKSLIFDQ-SGTYLALGGTD
       : :: :::..::.. :.. :.::::. .   :.   .:. : .. :.   :..:  :. :
NP_001 INFSPNGYHIATGSGDNTCKVWDLRQRRCVYTIPAHQNL-VTGVKFEPIHGNFLLTGAYD
     170       180       190       200        210       220        

          460       470       480       490       500     
pF1KB5 --VQIYICKQWTEILHFTEHSGLTTGVAFGHHAKFIASTGMDRSLKFYSL 
         ..:.    :. .  .. : : . :. ..  ...::. ..::..:..   
NP_001 NTAKIWTHPGWSPLKTLAGHEGKVMGLDISSDGQLIATCSYDRTFKLWMAE
      230       240       250       260       270         

>>NP_001309195 (OMIM: 607795,615922) U4/U6 small nuclear  (279 aa)
 initn: 410 init1: 204 opt: 405  Z-score: 329.2  bits: 69.6 E(85289): 1.4e-11
Smith-Waterman score: 405; 27.1% identity (60.5% similar) in 258 aa overlap (256-502:22-276)

         230       240       250       260       270       280     
pF1KB5 ALDLCPSDTNKILTGGADKNVVVFDKSSEQILATLKGHTKKVTSVVFHPSQDLVF-----
                                     .: ::.::. .: ..::::.. . .     
NP_001          MLSFVFDRSGLCKLWSVPDCNLLHTLRGHNTNVGAIVFHPKSTVSLDPKDV
                        10        20        30        40        50 

                 290       300       310       320       330       
pF1KB5 ---SASPDATIRIWSVPNASCVQVVRAHESAVTGLSLHATGDYLLSSSDDQYWAFSDIQT
          : . :.....::. .   :  ...:   :. .  : .: .: ..  :. : . :...
NP_001 NLASCAADGSVKLWSLDSDEPVADIEGHTVRVARVMWHPSGRFLGTTCYDRSWRLWDLEA
              60        70        80        90       100       110 

       340       350       360       370       380       390       
pF1KB5 GRVLTKVTDETSGCSLTCAQFHPDGLIFGTGTMDSQIKIWDLKERTNVANFPGHSGPITS
        . . .   .. :  .    :: :: . ::: .:.  ..:::.    .  . ::   : .
NP_001 QEEILHQEGHSMG--VYDIAFHQDGSLAGTGGLDAFGRVWDLRTGRCIMFLEGHLKEIYG
             120         130       140       150       160         

       400       410       420       430       440        450      
pF1KB5 IAFSENGYYLATAADDSSVKLWDLRKLKNFKTLQLDNNFEVKSLIFDQ-SGTYLALGGTD
       : :: :::..::.. :.. :.::::. .   :.   .:. : .. :.   :..:  :. :
NP_001 INFSPNGYHIATGSGDNTCKVWDLRQRRCVYTIPAHQNL-VTGVKFEPIHGNFLLTGAYD
     170       180       190       200        210       220        

          460       470       480       490       500     
pF1KB5 --VQIYICKQWTEILHFTEHSGLTTGVAFGHHAKFIASTGMDRSLKFYSL 
         ..:.    :. .  .. : : . :. ..  ...::. ..::..:..   
NP_001 NTAKIWTHPGWSPLKTLAGHEGKVMGLDISSDGQLIATCSYDRTFKLWMAE
      230       240       250       260       270         

>>NP_001231855 (OMIM: 607795,615922) U4/U6 small nuclear  (521 aa)
 initn: 410 init1: 204 opt: 405  Z-score: 326.2  bits: 69.9 E(85289): 2e-11
Smith-Waterman score: 405; 27.1% identity (60.5% similar) in 258 aa overlap (256-502:264-518)

         230       240       250       260       270       280     
pF1KB5 ALDLCPSDTNKILTGGADKNVVVFDKSSEQILATLKGHTKKVTSVVFHPSQDLVF-----
                                     .: ::.::. .: ..::::.. . .     
NP_001 SYCHFSPNSKMLATACWSGLCKLWSVPDCNLLHTLRGHNTNVGAIVFHPKSTVSLDPKDV
           240       250       260       270       280       290   

                 290       300       310       320       330       
pF1KB5 ---SASPDATIRIWSVPNASCVQVVRAHESAVTGLSLHATGDYLLSSSDDQYWAFSDIQT
          : . :.....::. .   :  ...:   :. .  : .: .: ..  :. : . :...
NP_001 NLASCAADGSVKLWSLDSDEPVADIEGHTVRVARVMWHPSGRFLGTTCYDRSWRLWDLEA
           300       310       320       330       340       350   

       340       350       360       370       380       390       
pF1KB5 GRVLTKVTDETSGCSLTCAQFHPDGLIFGTGTMDSQIKIWDLKERTNVANFPGHSGPITS
        . . .   .. :  .    :: :: . ::: .:.  ..:::.    .  . ::   : .
NP_001 QEEILHQEGHSMG--VYDIAFHQDGSLAGTGGLDAFGRVWDLRTGRCIMFLEGHLKEIYG
           360         370       380       390       400       410 

       400       410       420       430       440        450      
pF1KB5 IAFSENGYYLATAADDSSVKLWDLRKLKNFKTLQLDNNFEVKSLIFDQ-SGTYLALGGTD
       : :: :::..::.. :.. :.::::. .   :.   .:. : .. :.   :..:  :. :
NP_001 INFSPNGYHIATGSGDNTCKVWDLRQRRCVYTIPAHQNL-VTGVKFEPIHGNFLLTGAYD
             420       430       440       450        460       470

          460       470       480       490       500     
pF1KB5 --VQIYICKQWTEILHFTEHSGLTTGVAFGHHAKFIASTGMDRSLKFYSL 
         ..:.    :. .  .. : : . :. ..  ...::. ..::..:..   
NP_001 NTAKIWTHPGWSPLKTLAGHEGKVMGLDISSDGQLIATCSYDRTFKLWMAE
              480       490       500       510       520 

>>NP_004688 (OMIM: 607795,615922) U4/U6 small nuclear ri  (522 aa)
 initn: 410 init1: 204 opt: 405  Z-score: 326.2  bits: 69.9 E(85289): 2e-11
Smith-Waterman score: 405; 27.1% identity (60.5% similar) in 258 aa overlap (256-502:265-519)

         230       240       250       260       270       280     
pF1KB5 ALDLCPSDTNKILTGGADKNVVVFDKSSEQILATLKGHTKKVTSVVFHPSQDLVF-----
                                     .: ::.::. .: ..::::.. . .     
NP_004 SYCHFSPNSKMLATACWSGLCKLWSVPDCNLLHTLRGHNTNVGAIVFHPKSTVSLDPKDV
          240       250       260       270       280       290    

                 290       300       310       320       330       
pF1KB5 ---SASPDATIRIWSVPNASCVQVVRAHESAVTGLSLHATGDYLLSSSDDQYWAFSDIQT
          : . :.....::. .   :  ...:   :. .  : .: .: ..  :. : . :...
NP_004 NLASCAADGSVKLWSLDSDEPVADIEGHTVRVARVMWHPSGRFLGTTCYDRSWRLWDLEA
          300       310       320       330       340       350    

       340       350       360       370       380       390       
pF1KB5 GRVLTKVTDETSGCSLTCAQFHPDGLIFGTGTMDSQIKIWDLKERTNVANFPGHSGPITS
        . . .   .. :  .    :: :: . ::: .:.  ..:::.    .  . ::   : .
NP_004 QEEILHQEGHSMG--VYDIAFHQDGSLAGTGGLDAFGRVWDLRTGRCIMFLEGHLKEIYG
          360         370       380       390       400       410  

       400       410       420       430       440        450      
pF1KB5 IAFSENGYYLATAADDSSVKLWDLRKLKNFKTLQLDNNFEVKSLIFDQ-SGTYLALGGTD
       : :: :::..::.. :.. :.::::. .   :.   .:. : .. :.   :..:  :. :
NP_004 INFSPNGYHIATGSGDNTCKVWDLRQRRCVYTIPAHQNL-VTGVKFEPIHGNFLLTGAYD
            420       430       440       450        460       470 

          460       470       480       490       500     
pF1KB5 --VQIYICKQWTEILHFTEHSGLTTGVAFGHHAKFIASTGMDRSLKFYSL 
         ..:.    :. .  .. : : . :. ..  ...::. ..::..:..   
NP_004 NTAKIWTHPGWSPLKTLAGHEGKVMGLDISSDGQLIATCSYDRTFKLWMAE
             480       490       500       510       520  

>>NP_008882 (OMIM: 601787) transcription initiation fact  (800 aa)
 initn: 380 init1: 225 opt: 397  Z-score: 318.0  bits: 69.0 E(85289): 5.6e-11
Smith-Waterman score: 397; 30.2% identity (59.9% similar) in 242 aa overlap (248-485:527-758)

       220       230       240       250       260       270       
pF1KB5 SASIPGILALDLCPSDTNKILTGGADKNVVVFDKSSEQILATLKGHTKKVTSVVFHPSQD
                                     ..:... . :  : ::.  : .. : :...
NP_008 WSVTPKKLRSVKQASDLSLIDKESDDVLERIMDEKTASELKILYGHSGPVYGASFSPDRN
        500       510       520       530       540       550      

       280       290       300       310       320          330    
pF1KB5 LVFSASPDATIRIWSVPNASCVQVVRAHESAVTGLSLHATGDYLLSSSDDQY---WAFSD
        ..:.: :.:.:.::. . .:.   ..:.  :   ..   : :..:.. :.    :: . 
NP_008 YLLSSSEDGTVRLWSLQTFTCLVGYKGHNYPVWDTQFSPYGYYFVSGGHDRVARLWATDH
        560       570       580       590       600       610      

          340        350       360       370       380       390   
pF1KB5 IQTGRVLT-KVTDETSGCSLTCAQFHPDGLIFGTGTMDSQIKIWDLKERTNVANFPGHSG
        :  :... ...:      ..:..:::..   .::. :  ...::. . . :  : ::.:
NP_008 YQPLRIFAGHLAD------VNCTRFHPNSNYVATGSADRTVRLWDVLNGNCVRIFTGHKG
        620             630       640       650       660       670

           400       410       420       430       440       450   
pF1KB5 PITSIAFSENGYYLATAADDSSVKLWDLRKLKNFKTLQLDNNFEVKSLIFDQSGTYLALG
       :: :..:: :: .:::.: :. : :::. .      :.  ..  : :: :...:  :: :
NP_008 PIHSLTFSPNGRFLATGATDGRVLLWDIGHGLMVGELKGHTD-TVCSLRFSRDGEILASG
              680       690       700       710        720         

           460       470       480       490       500             
pF1KB5 GTDVQIYICKQWTEILHFTEHSGLTTGVAFGHHAKFIASTGMDRSLKFYSL         
       . :  .   . :  :  : .       .: ::                            
NP_008 SMDNTV---RLWDAIKAFEDLETDDFTTATGHINLPENSQELLLGTYMTKSTPVVHLHFT
     730          740       750       760       770       780      

NP_008 RRNLVLAAGAYSPQ
        790       800

>>NP_758440 (OMIM: 614784,615973) POC1 centriolar protei  (478 aa)
 initn: 322 init1: 186 opt: 382  Z-score: 309.1  bits: 66.7 E(85289): 1.8e-10
Smith-Waterman score: 382; 29.3% identity (59.1% similar) in 276 aa overlap (224-496:21-291)

           200       210       220       230       240       250   
pF1KB5 VPEELVKPEELSKYRQVASHVGLHSASIPGILALDLCPSDTNKILTGGADKNVVVFDKSS
                                     : .::: :.  ... :.. :  ..... . 
NP_758           MASATEDPVLERYFKGHKAAITSLDLSPNG-KQLATASWDTFLMLWNFKP
                         10        20        30         40         

           260       270       280       290        300       310  
pF1KB5 EQILATLKGHTKKVTSVVFHPSQDLVFSASPDATIRIWSVPNA-SCVQVVRAHESAVTGL
       .       ::   :::: : :  .:. ::: : :.:.: .:.  .  .  .:: . : ..
NP_758 HARAYRYVGHKDVVTSVQFSPHGNLLASASRDRTVRLW-IPDKRGKFSEFKAHTAPVRSV
      50        60        70        80         90       100        

            320       330       340       350       360       370  
pF1KB5 SLHATGDYLLSSSDDQYWAFSDIQTGRVLTKVTDETSGCSLTCAQFHPDGLIFGTGTMDS
       .. : :..: ..:.:.     ..   : : ..  .:    . ::.: ::: .. . . :.
NP_758 DFSADGQFLATASEDKSIKVWSMYRQRFLYSLYRHTHW--VRCAKFSPDGRLIVSCSEDK
      110       120       130       140         150       160      

            380       390       400       410       420       430  
pF1KB5 QIKIWDLKERTNVANFPGHSGPITSIAFSENGYYLATAADDSSVKLWDLRKLKNFKTLQL
        :::::  ..  : ::    :  . . :. .:  .:.:..:..::.::.:  : ..  :.
NP_758 TIKIWDTTNKQCVNNFSDSVGFANFVDFNPSGTCIASAGSDQTVKVWDVRVNKLLQHYQV
        170       180       190       200       210       220      

            440       450       460       470         480       490
pF1KB5 DNNFEVKSLIFDQSGTYLALGGTDVQIYICKQWTEILHFTE--HSGLTTGVAFGHHAKFI
        ..  :. . :  ::.::  ...:  . :       : .:   :.: .  :.:.. ....
NP_758 HSG-GVNCISFHPSGNYLITASSDGTLKILDLLEGRLIYTLQGHTGPVFTVSFSKGGELF
         230       240       250       260       270       280     

              500                                                  
pF1KB5 ASTGMDRSLKFYSL                                              
       :: : :                                                      
NP_758 ASGGADTQVLLWRTNFDELHCKGLTKRNLKRLHFDSPPHLLDIYPRTPHPHEEKVETVEI
         290       300       310       320       330       340     

>>NP_001186706 (OMIM: 614784,615973) POC1 centriolar pro  (436 aa)
 initn: 322 init1: 186 opt: 368  Z-score: 298.9  bits: 64.6 E(85289): 6.5e-10
Smith-Waterman score: 368; 31.1% identity (59.7% similar) in 238 aa overlap (262-496:16-249)

             240       250       260       270       280       290 
pF1KB5 SDTNKILTGGADKNVVVFDKSSEQILATLKGHTKKVTSVVFHPSQDLVFSASPDATIRIW
                                     ::   :::: : :  .:. ::: : :.:.:
NP_001                MLWNFKPHARAYRYVGHKDVVTSVQFSPHGNLLASASRDRTVRLW
                              10        20        30        40     

              300       310       320       330       340       350
pF1KB5 SVPNA-SCVQVVRAHESAVTGLSLHATGDYLLSSSDDQYWAFSDIQTGRVLTKVTDETSG
        .:.  .  .  .:: . : .... : :..: ..:.:.     ..   : : ..  .:  
NP_001 -IPDKRGKFSEFKAHTAPVRSVDFSADGQFLATASEDKSIKVWSMYRQRFLYSLYRHTHW
           50        60        70        80        90       100    

              360       370       380       390       400       410
pF1KB5 CSLTCAQFHPDGLIFGTGTMDSQIKIWDLKERTNVANFPGHSGPITSIAFSENGYYLATA
         . ::.: ::: .. . . :. :::::  ..  : ::    :  . . :. .:  .:.:
NP_001 --VRCAKFSPDGRLIVSCSEDKTIKIWDTTNKQCVNNFSDSVGFANFVDFNPSGTCIASA
            110       120       130       140       150       160  

              420       430       440       450       460       470
pF1KB5 ADDSSVKLWDLRKLKNFKTLQLDNNFEVKSLIFDQSGTYLALGGTDVQIYICKQWTEILH
       ..:..::.::.:  : ..  :. ..  :. . :  ::.::  ...:  . :       : 
NP_001 GSDQTVKVWDVRVNKLLQHYQVHSG-GVNCISFHPSGNYLITASSDGTLKILDLLEGRLI
            170       180        190       200       210       220 

                480       490       500                            
pF1KB5 FTE--HSGLTTGVAFGHHAKFIASTGMDRSLKFYSL                        
       .:   :.: .  :.:.. ....:: : :                                
NP_001 YTLQGHTGPVFTVSFSKGGELFASGGADTQVLLWRTNFDELHCKGLTKRNLKRLHFDSPP
             230       240       250       260       270       280 

>>NP_060058 (OMIM: 609012) WD repeat-containing protein   (334 aa)
 initn: 458 init1: 229 opt: 353  Z-score: 288.8  bits: 62.4 E(85289): 2.4e-09
Smith-Waterman score: 375; 27.1% identity (65.7% similar) in 207 aa overlap (259-465:40-241)

      230       240       250       260       270       280        
pF1KB5 LCPSDTNKILTGGADKNVVVFDKSSEQILATLKGHTKKVTSVVFHPSQDLVFSASPDATI
                                     :: :::: :.:: : :. . . :.: :  :
NP_060 TEAARAQPTPSSSATQSKPTPVKPNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLI
      10        20        30        40        50        60         

      290       300       310       320       330       340        
pF1KB5 RIWSVPNASCVQVVRAHESAVTGLSLHATGDYLLSSSDDQYWAFSDIQTGRVLTKVTDET
       .::.. ...  ... .:. ... ..  . .. :.:.:::.   . :...:. :  .  ..
NP_060 KIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHS
      70        80        90       100       110       120         

      350       360       370       380       390       400        
pF1KB5 SGCSLTCAQFHPDGLIFGTGTMDSQIKIWDLKERTNVANFPGHSGPITSIAFSENGYYLA
       .   . : .:.:.. .. .:..: ...:::.:    . ..:.:: :.... :...:  ..
NP_060 N--YVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIV
     130         140       150       160       170       180       

      410       420       430       440       450       460        
pF1KB5 TAADDSSVKLWDLRKLKNFKTLQLDNNFEVKSLIFDQSGTYLALGGTDVQIYICKQWTEI
       ... :.  ..::  . . .:::  :.:  :. . :. .: :.  .  :  .   : :   
NP_060 SSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTL---KLWDYS
       190       200       210       220       230          240    

      470       480       490       500                            
pF1KB5 LHFTEHSGLTTGVAFGHHAKFIASTGMDRSLKFYSL                        
                                                                   
NP_060 KGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVV
          250       260       270       280       290       300    

>>XP_005272220 (OMIM: 609012) PREDICTED: WD repeat-conta  (334 aa)
 initn: 458 init1: 229 opt: 353  Z-score: 288.8  bits: 62.4 E(85289): 2.4e-09
Smith-Waterman score: 375; 27.1% identity (65.7% similar) in 207 aa overlap (259-465:40-241)

      230       240       250       260       270       280        
pF1KB5 LCPSDTNKILTGGADKNVVVFDKSSEQILATLKGHTKKVTSVVFHPSQDLVFSASPDATI
                                     :: :::: :.:: : :. . . :.: :  :
XP_005 TEAARAQPTPSSSATQSKPTPVKPNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLI
      10        20        30        40        50        60         

      290       300       310       320       330       340        
pF1KB5 RIWSVPNASCVQVVRAHESAVTGLSLHATGDYLLSSSDDQYWAFSDIQTGRVLTKVTDET
       .::.. ...  ... .:. ... ..  . .. :.:.:::.   . :...:. :  .  ..
XP_005 KIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHS
      70        80        90       100       110       120         

      350       360       370       380       390       400        
pF1KB5 SGCSLTCAQFHPDGLIFGTGTMDSQIKIWDLKERTNVANFPGHSGPITSIAFSENGYYLA
       .   . : .:.:.. .. .:..: ...:::.:    . ..:.:: :.... :...:  ..
XP_005 N--YVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIV
     130         140       150       160       170       180       

      410       420       430       440       450       460        
pF1KB5 TAADDSSVKLWDLRKLKNFKTLQLDNNFEVKSLIFDQSGTYLALGGTDVQIYICKQWTEI
       ... :.  ..::  . . .:::  :.:  :. . :. .: :.  .  :  .   : :   
XP_005 SSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTL---KLWDYS
       190       200       210       220       230          240    

      470       480       490       500                            
pF1KB5 LHFTEHSGLTTGVAFGHHAKFIASTGMDRSLKFYSL                        
                                                                   
XP_005 KGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVV
          250       260       270       280       290       300    




504 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sat Nov  5 10:39:33 2016 done: Sat Nov  5 10:39:34 2016
 Total Scan time:  8.490 Total Display time:  0.020

Function used was FASTA [36.3.4 Apr, 2011]
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