Result of FASTA (ccds) for pF1KB5808
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB5808, 454 aa
  1>>>pF1KB5808 454 - 454 aa - 454 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 7.3916+/-0.000699; mu= 10.1566+/- 0.043
 mean_var=143.3517+/-28.637, 0's: 0 Z-trim(115.3): 123  B-trim: 16 in 1/54
 Lambda= 0.107121
 statistics sampled from 15733 (15857) to 15733 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.797), E-opt: 0.2 (0.487), width:  16
 Scan time:  3.290

The best scores are:                                      opt bits E(32554)
CCDS8850.1 RARG gene_id:5916|Hs108|chr12           ( 454) 3103 490.5 1.5e-138
CCDS41790.1 RARG gene_id:5916|Hs108|chr12          ( 443) 2700 428.2 8.1e-120
CCDS58236.1 RARG gene_id:5916|Hs108|chr12          ( 382) 2618 415.5 4.7e-116
CCDS58237.1 RARG gene_id:5916|Hs108|chr12          ( 432) 2325 370.3 2.2e-102
CCDS2642.1 RARB gene_id:5915|Hs108|chr3            ( 448) 2199 350.8 1.7e-96
CCDS11366.1 RARA gene_id:5914|Hs108|chr17          ( 462) 2167 345.9 5.2e-95
CCDS42317.1 RARA gene_id:5914|Hs108|chr17          ( 457) 2124 339.2 5.2e-93
CCDS46775.1 RARB gene_id:5915|Hs108|chr3           ( 336) 1777 285.5 5.7e-77
CCDS45671.1 RARA gene_id:5914|Hs108|chr17          ( 365) 1460 236.5 3.4e-62
CCDS35172.1 RXRA gene_id:6256|Hs108|chr9           ( 462)  739 125.2 1.4e-28
CCDS8818.1 NR4A1 gene_id:3164|Hs108|chr12          ( 598)  725 123.1 7.8e-28
CCDS4768.1 RXRB gene_id:6257|Hs108|chr6            ( 533)  724 122.9 7.9e-28
CCDS55828.1 NR4A1 gene_id:3164|Hs108|chr12         ( 611)  725 123.1 7.9e-28
CCDS73471.1 NR4A1 gene_id:3164|Hs108|chr12         ( 652)  725 123.1 8.4e-28
CCDS1517.1 ESRRG gene_id:2104|Hs108|chr1           ( 435)  712 121.0 2.4e-27
CCDS41468.1 ESRRG gene_id:2104|Hs108|chr1          ( 458)  712 121.0 2.5e-27
CCDS59007.1 RXRB gene_id:6257|Hs108|chr6           ( 537)  712 121.0 2.9e-27
CCDS2201.1 NR4A2 gene_id:4929|Hs108|chr2           ( 598)  709 120.6 4.3e-27
CCDS58061.1 ESRRG gene_id:2104|Hs108|chr1          ( 470)  701 119.3 8.4e-27
CCDS9850.2 ESRRB gene_id:2103|Hs108|chr14          ( 508)  669 114.4 2.8e-25
CCDS6743.1 NR4A3 gene_id:8013|Hs108|chr9           ( 626)  657 112.6 1.2e-24
CCDS6742.1 NR4A3 gene_id:8013|Hs108|chr9           ( 637)  657 112.6 1.2e-24
CCDS12352.1 NR2F6 gene_id:2063|Hs108|chr19         ( 404)  615 106.0 7.5e-23
CCDS10375.1 NR2F2 gene_id:7026|Hs108|chr15         ( 414)  608 104.9 1.6e-22
CCDS4068.1 NR2F1 gene_id:7025|Hs108|chr5           ( 423)  599 103.5 4.3e-22
CCDS60830.1 ESRRA gene_id:2101|Hs108|chr11         ( 422)  545 95.2 1.4e-19
CCDS42316.1 THRA gene_id:7067|Hs108|chr17          ( 410)  530 92.8 6.8e-19
CCDS2641.1 THRB gene_id:7068|Hs108|chr3            ( 461)  497 87.8 2.6e-17
CCDS58546.1 THRA gene_id:7067|Hs108|chr17          ( 451)  448 80.2 4.8e-15
CCDS11360.1 THRA gene_id:7067|Hs108|chr17          ( 490)  446 79.9 6.4e-15
CCDS58673.1 NR1H2 gene_id:7376|Hs108|chr19         ( 363)  443 79.4 6.9e-15
CCDS42593.1 NR1H2 gene_id:7376|Hs108|chr19         ( 460)  443 79.4 8.3e-15
CCDS1248.1 RXRG gene_id:6258|Hs108|chr1            ( 463)  430 77.4 3.4e-14
CCDS72970.1 RXRG gene_id:6258|Hs108|chr1           ( 340)  422 76.1 6.2e-14
CCDS10177.1 RORA gene_id:6095|Hs108|chr15          ( 523)  419 75.8 1.2e-13
CCDS45271.1 RORA gene_id:6095|Hs108|chr15          ( 468)  415 75.1 1.7e-13
CCDS10178.1 RORA gene_id:6095|Hs108|chr15          ( 548)  415 75.2 1.9e-13
CCDS10179.1 RORA gene_id:6095|Hs108|chr15          ( 556)  415 75.2 1.9e-13
CCDS33718.1 NR1D2 gene_id:9975|Hs108|chr3          ( 579)  412 74.7 2.8e-13
CCDS41821.1 NR2C1 gene_id:7181|Hs108|chr12         ( 467)  410 74.3 2.9e-13
CCDS44953.1 NR2C1 gene_id:7181|Hs108|chr12         ( 483)  410 74.3   3e-13
CCDS1004.1 RORC gene_id:6097|Hs108|chr1            ( 518)  410 74.4 3.1e-13
CCDS9051.1 NR2C1 gene_id:7181|Hs108|chr12          ( 603)  410 74.4 3.5e-13
CCDS74905.1 NR2C2 gene_id:7182|Hs108|chr3          ( 596)  406 73.8 5.4e-13
CCDS6646.1 RORB gene_id:6096|Hs108|chr9            ( 459)  404 73.4 5.4e-13
CCDS2621.1 NR2C2 gene_id:7182|Hs108|chr3           ( 615)  406 73.8 5.5e-13
CCDS30856.1 RORC gene_id:6097|Hs108|chr1           ( 497)  403 73.3 6.4e-13
CCDS6744.1 NR4A3 gene_id:8013|Hs108|chr9           ( 443)  402 73.1 6.5e-13
CCDS58060.1 ESRRG gene_id:2104|Hs108|chr1          ( 396)  396 72.1 1.1e-12
CCDS47298.1 NR3C1 gene_id:2908|Hs108|chr5          ( 742)  399 72.8 1.4e-12


>>CCDS8850.1 RARG gene_id:5916|Hs108|chr12                (454 aa)
 initn: 3103 init1: 3103 opt: 3103  Z-score: 2601.0  bits: 490.5 E(32554): 1.5e-138
Smith-Waterman score: 3103; 100.0% identity (100.0% similar) in 454 aa overlap (1-454:1-454)

               10        20        30        40        50        60
pF1KB5 MATNKERLFAAGALGPGSGYPGAGFPFAFPGALRGSPPFEMLSPSFRGLGQPDLPKEMAS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS88 MATNKERLFAAGALGPGSGYPGAGFPFAFPGALRGSPPFEMLSPSFRGLGQPDLPKEMAS
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB5 LSVETQSTSSEEMVPSSPSPPPPPRVYKPCFVCNDKSSGYHYGVSSCEGCKGFFRRSIQK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS88 LSVETQSTSSEEMVPSSPSPPPPPRVYKPCFVCNDKSSGYHYGVSSCEGCKGFFRRSIQK
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB5 NMVYTCHRDKNCIINKVTRNRCQYCRLQKCFEVGMSKEAVRNDRNKKKKEVKEEGSPDSY
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS88 NMVYTCHRDKNCIINKVTRNRCQYCRLQKCFEVGMSKEAVRNDRNKKKKEVKEEGSPDSY
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB5 ELSPQLEELITKVSKAHQETFPSLCQLGKYTTNSSADHRVQLDLGLWDKFSELATKCIIK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS88 ELSPQLEELITKVSKAHQETFPSLCQLGKYTTNSSADHRVQLDLGLWDKFSELATKCIIK
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB5 IVEFAKRLPGFTGLSIADQITLLKAACLDILMLRICTRYTPEQDTMTFSDGLTLNRTQMH
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS88 IVEFAKRLPGFTGLSIADQITLLKAACLDILMLRICTRYTPEQDTMTFSDGLTLNRTQMH
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KB5 NAGFGPLTDLVFAFAGQLLPLEMDDTETGLLSAICLICGDRMDLEEPEKVDKLQEPLLEA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS88 NAGFGPLTDLVFAFAGQLLPLEMDDTETGLLSAICLICGDRMDLEEPEKVDKLQEPLLEA
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KB5 LRLYARRRRPSQPYMFPRMLMKITDLRGISTKGAERAITLKMEIPGPMPPLIREMLENPE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS88 LRLYARRRRPSQPYMFPRMLMKITDLRGISTKGAERAITLKMEIPGPMPPLIREMLENPE
              370       380       390       400       410       420

              430       440       450    
pF1KB5 MFEDDSSQPGPHPNASSEDEVPGGQGKGGLKSPA
       ::::::::::::::::::::::::::::::::::
CCDS88 MFEDDSSQPGPHPNASSEDEVPGGQGKGGLKSPA
              430       440       450    

>>CCDS41790.1 RARG gene_id:5916|Hs108|chr12               (443 aa)
 initn: 2724 init1: 2692 opt: 2700  Z-score: 2264.6  bits: 428.2 E(32554): 8.1e-120
Smith-Waterman score: 2700; 92.3% identity (93.7% similar) in 442 aa overlap (13-454:9-443)

               10        20        30        40        50        60
pF1KB5 MATNKERLFAAGALGPGSGYPGAGFPFAFPGALRGSPPFEMLSPSFRGLGQPDLPKEMAS
                   : ::   : .:: : :  : :: .      .  : :: .   :.  . 
CCDS41     MYDCMETFAPGPRRLYGAAG-PGA--GLLRRATG----GSCFAGLESFAWPQPASL
                   10        20           30            40         

               70        80        90       100       110       120
pF1KB5 LSVETQSTSSEEMVPSSPSPPPPPRVYKPCFVCNDKSSGYHYGVSSCEGCKGFFRRSIQK
        :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS41 QSVETQSTSSEEMVPSSPSPPPPPRVYKPCFVCNDKSSGYHYGVSSCEGCKGFFRRSIQK
      50        60        70        80        90       100         

              130       140       150       160       170       180
pF1KB5 NMVYTCHRDKNCIINKVTRNRCQYCRLQKCFEVGMSKEAVRNDRNKKKKEVKEEGSPDSY
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS41 NMVYTCHRDKNCIINKVTRNRCQYCRLQKCFEVGMSKEAVRNDRNKKKKEVKEEGSPDSY
     110       120       130       140       150       160         

              190       200       210       220       230       240
pF1KB5 ELSPQLEELITKVSKAHQETFPSLCQLGKYTTNSSADHRVQLDLGLWDKFSELATKCIIK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS41 ELSPQLEELITKVSKAHQETFPSLCQLGKYTTNSSADHRVQLDLGLWDKFSELATKCIIK
     170       180       190       200       210       220         

              250       260       270       280       290       300
pF1KB5 IVEFAKRLPGFTGLSIADQITLLKAACLDILMLRICTRYTPEQDTMTFSDGLTLNRTQMH
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS41 IVEFAKRLPGFTGLSIADQITLLKAACLDILMLRICTRYTPEQDTMTFSDGLTLNRTQMH
     230       240       250       260       270       280         

              310       320       330       340       350       360
pF1KB5 NAGFGPLTDLVFAFAGQLLPLEMDDTETGLLSAICLICGDRMDLEEPEKVDKLQEPLLEA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS41 NAGFGPLTDLVFAFAGQLLPLEMDDTETGLLSAICLICGDRMDLEEPEKVDKLQEPLLEA
     290       300       310       320       330       340         

              370       380       390       400       410       420
pF1KB5 LRLYARRRRPSQPYMFPRMLMKITDLRGISTKGAERAITLKMEIPGPMPPLIREMLENPE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS41 LRLYARRRRPSQPYMFPRMLMKITDLRGISTKGAERAITLKMEIPGPMPPLIREMLENPE
     350       360       370       380       390       400         

              430       440       450    
pF1KB5 MFEDDSSQPGPHPNASSEDEVPGGQGKGGLKSPA
       ::::::::::::::::::::::::::::::::::
CCDS41 MFEDDSSQPGPHPNASSEDEVPGGQGKGGLKSPA
     410       420       430       440   

>>CCDS58236.1 RARG gene_id:5916|Hs108|chr12               (382 aa)
 initn: 2618 init1: 2618 opt: 2618  Z-score: 2197.0  bits: 415.5 E(32554): 4.7e-116
Smith-Waterman score: 2618; 100.0% identity (100.0% similar) in 382 aa overlap (73-454:1-382)

             50        60        70        80        90       100  
pF1KB5 SPSFRGLGQPDLPKEMASLSVETQSTSSEEMVPSSPSPPPPPRVYKPCFVCNDKSSGYHY
                                     ::::::::::::::::::::::::::::::
CCDS58                               MVPSSPSPPPPPRVYKPCFVCNDKSSGYHY
                                             10        20        30

            110       120       130       140       150       160  
pF1KB5 GVSSCEGCKGFFRRSIQKNMVYTCHRDKNCIINKVTRNRCQYCRLQKCFEVGMSKEAVRN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS58 GVSSCEGCKGFFRRSIQKNMVYTCHRDKNCIINKVTRNRCQYCRLQKCFEVGMSKEAVRN
               40        50        60        70        80        90

            170       180       190       200       210       220  
pF1KB5 DRNKKKKEVKEEGSPDSYELSPQLEELITKVSKAHQETFPSLCQLGKYTTNSSADHRVQL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS58 DRNKKKKEVKEEGSPDSYELSPQLEELITKVSKAHQETFPSLCQLGKYTTNSSADHRVQL
              100       110       120       130       140       150

            230       240       250       260       270       280  
pF1KB5 DLGLWDKFSELATKCIIKIVEFAKRLPGFTGLSIADQITLLKAACLDILMLRICTRYTPE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS58 DLGLWDKFSELATKCIIKIVEFAKRLPGFTGLSIADQITLLKAACLDILMLRICTRYTPE
              160       170       180       190       200       210

            290       300       310       320       330       340  
pF1KB5 QDTMTFSDGLTLNRTQMHNAGFGPLTDLVFAFAGQLLPLEMDDTETGLLSAICLICGDRM
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS58 QDTMTFSDGLTLNRTQMHNAGFGPLTDLVFAFAGQLLPLEMDDTETGLLSAICLICGDRM
              220       230       240       250       260       270

            350       360       370       380       390       400  
pF1KB5 DLEEPEKVDKLQEPLLEALRLYARRRRPSQPYMFPRMLMKITDLRGISTKGAERAITLKM
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS58 DLEEPEKVDKLQEPLLEALRLYARRRRPSQPYMFPRMLMKITDLRGISTKGAERAITLKM
              280       290       300       310       320       330

            410       420       430       440       450    
pF1KB5 EIPGPMPPLIREMLENPEMFEDDSSQPGPHPNASSEDEVPGGQGKGGLKSPA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS58 EIPGPMPPLIREMLENPEMFEDDSSQPGPHPNASSEDEVPGGQGKGGLKSPA
              340       350       360       370       380  

>>CCDS58237.1 RARG gene_id:5916|Hs108|chr12               (432 aa)
 initn: 2325 init1: 2325 opt: 2325  Z-score: 1951.5  bits: 370.3 E(32554): 2.2e-102
Smith-Waterman score: 2325; 99.7% identity (100.0% similar) in 345 aa overlap (110-454:88-432)

      80        90       100       110       120       130         
pF1KB5 PPPPPRVYKPCFVCNDKSSGYHYGVSSCEGCKGFFRRSIQKNMVYTCHRDKNCIINKVTR
                                     :.::::::::::::::::::::::::::::
CCDS58 PGPGPACCAEPPAAPVSPDLNLLPGRNPPACNGFFRRSIQKNMVYTCHRDKNCIINKVTR
        60        70        80        90       100       110       

     140       150       160       170       180       190         
pF1KB5 NRCQYCRLQKCFEVGMSKEAVRNDRNKKKKEVKEEGSPDSYELSPQLEELITKVSKAHQE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS58 NRCQYCRLQKCFEVGMSKEAVRNDRNKKKKEVKEEGSPDSYELSPQLEELITKVSKAHQE
       120       130       140       150       160       170       

     200       210       220       230       240       250         
pF1KB5 TFPSLCQLGKYTTNSSADHRVQLDLGLWDKFSELATKCIIKIVEFAKRLPGFTGLSIADQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS58 TFPSLCQLGKYTTNSSADHRVQLDLGLWDKFSELATKCIIKIVEFAKRLPGFTGLSIADQ
       180       190       200       210       220       230       

     260       270       280       290       300       310         
pF1KB5 ITLLKAACLDILMLRICTRYTPEQDTMTFSDGLTLNRTQMHNAGFGPLTDLVFAFAGQLL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS58 ITLLKAACLDILMLRICTRYTPEQDTMTFSDGLTLNRTQMHNAGFGPLTDLVFAFAGQLL
       240       250       260       270       280       290       

     320       330       340       350       360       370         
pF1KB5 PLEMDDTETGLLSAICLICGDRMDLEEPEKVDKLQEPLLEALRLYARRRRPSQPYMFPRM
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS58 PLEMDDTETGLLSAICLICGDRMDLEEPEKVDKLQEPLLEALRLYARRRRPSQPYMFPRM
       300       310       320       330       340       350       

     380       390       400       410       420       430         
pF1KB5 LMKITDLRGISTKGAERAITLKMEIPGPMPPLIREMLENPEMFEDDSSQPGPHPNASSED
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS58 LMKITDLRGISTKGAERAITLKMEIPGPMPPLIREMLENPEMFEDDSSQPGPHPNASSED
       360       370       380       390       400       410       

     440       450    
pF1KB5 EVPGGQGKGGLKSPA
       :::::::::::::::
CCDS58 EVPGGQGKGGLKSPA
       420       430  

>>CCDS2642.1 RARB gene_id:5915|Hs108|chr3                 (448 aa)
 initn: 2230 init1: 2193 opt: 2199  Z-score: 1846.1  bits: 350.8 E(32554): 1.7e-96
Smith-Waterman score: 2199; 78.0% identity (90.6% similar) in 413 aa overlap (42-453:33-445)

              20        30        40        50        60        70 
pF1KB5 GALGPGSGYPGAGFPFAFPGALRGSPPFEMLSPSFRGLGQPDLPKEMASLSVETQSTSSE
                                     :.  : :: : .  .. .. :.::::::::
CCDS26 DCMDVLSVSPGQILDFYTASPSSCMLQEKALKACFSGLTQTEWQHRHTAQSIETQSTSSE
             10        20        30        40        50        60  

              80        90       100       110       120       130 
pF1KB5 EMVPSSPSPPPPPRVYKPCFVCNDKSSGYHYGVSSCEGCKGFFRRSIQKNMVYTCHRDKN
       :.::: ::: ::::::::::::.:::::::::::.::::::::::::::::.::::::::
CCDS26 ELVPSPPSPLPPPRVYKPCFVCQDKSSGYHYGVSACEGCKGFFRRSIQKNMIYTCHRDKN
             70        80        90       100       110       120  

             140       150       160       170       180       190 
pF1KB5 CIINKVTRNRCQYCRLQKCFEVGMSKEAVRNDRNKKKKEVKEEGSPDSYELSPQLEELIT
       :.:::::::::::::::::::::::::.:::::::::::....   .:::.. .:..:  
CCDS26 CVINKVTRNRCQYCRLQKCFEVGMSKESVRNDRNKKKKETSKQECTESYEMTAELDDLTE
            130       140       150       160       170       180  

             200       210       220       230       240       250 
pF1KB5 KVSKAHQETFPSLCQLGKYTTNSSADHRVQLDLGLWDKFSELATKCIIKIVEFAKRLPGF
       :. ::::::::::::::::::::::::::.::::::::::::::::::::::::::::::
CCDS26 KIRKAHQETFPSLCQLGKYTTNSSADHRVRLDLGLWDKFSELATKCIIKIVEFAKRLPGF
            190       200       210       220       230       240  

             260       270       280       290       300       310 
pF1KB5 TGLSIADQITLLKAACLDILMLRICTRYTPEQDTMTFSDGLTLNRTQMHNAGFGPLTDLV
       :::.::::::::::::::::.:::::::::::::::::::::::::::::::::::::::
CCDS26 TGLTIADQITLLKAACLDILILRICTRYTPEQDTMTFSDGLTLNRTQMHNAGFGPLTDLV
            250       260       270       280       290       300  

             320       330       340       350       360       370 
pF1KB5 FAFAGQLLPLEMDDTETGLLSAICLICGDRMDLEEPEKVDKLQEPLLEALRLYARRRRPS
       :.::.:::::::::::::::::::::::::.::::: :::::::::::::..: :.::::
CCDS26 FTFANQLLPLEMDDTETGLLSAICLICGDRQDLEEPTKVDKLQEPLLEALKIYIRKRRPS
            310       320       330       340       350       360  

             380       390       400       410       420       430 
pF1KB5 QPYMFPRMLMKITDLRGISTKGAERAITLKMEIPGPMPPLIREMLENPEMFEDDSSQPGP
       .:.:::..::::::::.::.:::::.::::::::: :::::.::::: :  :  . . . 
CCDS26 KPHMFPKILMKITDLRSISAKGAERVITLKMEIPGSMPPLIQEMLENSEGHEPLTPSSSG
            370       380       390       400       410       420  

             440       450       
pF1KB5 HPNASSEDEVPGGQGKGGL-KSPA  
       .    : .  :..  ..:. .::   
CCDS26 NTAEHSPSISPSSVENSGVSQSPLVQ
            430       440        

>>CCDS11366.1 RARA gene_id:5914|Hs108|chr17               (462 aa)
 initn: 2195 init1: 2121 opt: 2167  Z-score: 1819.2  bits: 345.9 E(32554): 5.2e-95
Smith-Waterman score: 2176; 72.1% identity (84.5% similar) in 458 aa overlap (1-453:1-440)

               10        20        30         40            50     
pF1KB5 MATNKERLFAAGALGPGSGYPGAGFPFAFPGALRG-SPPFEMLSPSFR----GLGQPDLP
       ::.:.    . :. :  .:::   . : ::  : : :::  . . . .    : . :. :
CCDS11 MASNSSSCPTPGG-GHLNGYPVPPYAFFFPPMLGGLSPPGALTTLQHQLPVSGYSTPS-P
               10         20        30        40        50         

          60        70        80        90       100       110     
pF1KB5 KEMASLSVETQSTSSEEMVPSSPSPPPPPRVYKPCFVCNDKSSGYHYGVSSCEGCKGFFR
             ..::::.::::.::: ::::: ::.:::::::.:::::::::::.:::::::::
CCDS11 A-----TIETQSSSSEEIVPSPPSPPPLPRIYKPCFVCQDKSSGYHYGVSACEGCKGFFR
            60        70        80        90       100       110   

         120       130       140       150       160       170     
pF1KB5 RSIQKNMVYTCHRDKNCIINKVTRNRCQYCRLQKCFEVGMSKEAVRNDRNKKKKEVKEEG
       :::::::::::::::::::::::::::::::::::::::::::.:::::::::::: .  
CCDS11 RSIQKNMVYTCHRDKNCIINKVTRNRCQYCRLQKCFEVGMSKESVRNDRNKKKKEVPKPE
           120       130       140       150       160       170   

         180       190       200       210       220       230     
pF1KB5 SPDSYELSPQLEELITKVSKAHQETFPSLCQLGKYTTNSSADHRVQLDLGLWDKFSELAT
         .:: :.:.. ::: :: ::::::::.::::::::::.:...::.::. ::::::::.:
CCDS11 CSESYTLTPEVGELIEKVRKAHQETFPALCQLGKYTTNNSSEQRVSLDIDLWDKFSELST
           180       190       200       210       220       230   

         240       250       260       270       280       290     
pF1KB5 KCIIKIVEFAKRLPGFTGLSIADQITLLKAACLDILMLRICTRYTPEQDTMTFSDGLTLN
       ::::: :::::.::::: :.::::::::::::::::.:::::::::::::::::::::::
CCDS11 KCIIKTVEFAKQLPGFTTLTIADQITLLKAACLDILILRICTRYTPEQDTMTFSDGLTLN
           240       250       260       270       280       290   

         300       310       320       330       340       350     
pF1KB5 RTQMHNAGFGPLTDLVFAFAGQLLPLEMDDTETGLLSAICLICGDRMDLEEPEKVDKLQE
       ::::::::::::::::::::.:::::::::.:::::::::::::::.:::.:..:: :::
CCDS11 RTQMHNAGFGPLTDLVFAFANQLLPLEMDDAETGLLSAICLICGDRQDLEQPDRVDMLQE
           300       310       320       330       340       350   

         360       370       380       390       400       410     
pF1KB5 PLLEALRLYARRRRPSQPYMFPRMLMKITDLRGISTKGAERAITLKMEIPGPMPPLIREM
       ::::::..:.:.::::.:.:::.:::::::::.::.:::::.::::::::: :::::.::
CCDS11 PLLEALKVYVRKRRPSRPHMFPKMLMKITDLRSISAKGAERVITLKMEIPGSMPPLIQEM
           360       370       380       390       400       410   

         420       430       440       450                         
pF1KB5 LENPEMFEDDSSQPGPHPNASSEDEVPGGQGKGGLKSPA                     
       ::: : ..  :.:::            ::.  :::  :                      
CCDS11 LENSEGLDTLSGQPGG-----------GGRDGGGLAPPPGSCSPSLSPSSNRSSPATHSP
           420                  430       440       450       460  

>>CCDS42317.1 RARA gene_id:5914|Hs108|chr17               (457 aa)
 initn: 2153 init1: 2124 opt: 2124  Z-score: 1783.3  bits: 339.2 E(32554): 5.2e-93
Smith-Waterman score: 2134; 73.4% identity (85.2% similar) in 440 aa overlap (14-453:28-435)

                             10        20        30        40      
pF1KB5               MATNKERLFAAGALGPGSGYPGAGFPFAFPGALRGSPPFEMLSPSF
                                  : : .: :. : :.. :  ::        .: .
CCDS42 MYESVEVGGPTPNPFLVVDFYNQNRACLLPEKGLPAPG-PYSTP--LR--------TPLW
               10        20        30         40                   

         50        60        70        80        90       100      
pF1KB5 RGLGQPDLPKEMASLSVETQSTSSEEMVPSSPSPPPPPRVYKPCFVCNDKSSGYHYGVSS
        :          .. :.::::.::::.::: ::::: ::.:::::::.:::::::::::.
CCDS42 NG----------SNHSIETQSSSSEEIVPSPPSPPPLPRIYKPCFVCQDKSSGYHYGVSA
      50                  60        70        80        90         

        110       120       130       140       150       160      
pF1KB5 CEGCKGFFRRSIQKNMVYTCHRDKNCIINKVTRNRCQYCRLQKCFEVGMSKEAVRNDRNK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::.:::::::
CCDS42 CEGCKGFFRRSIQKNMVYTCHRDKNCIINKVTRNRCQYCRLQKCFEVGMSKESVRNDRNK
     100       110       120       130       140       150         

        170       180       190       200       210       220      
pF1KB5 KKKEVKEEGSPDSYELSPQLEELITKVSKAHQETFPSLCQLGKYTTNSSADHRVQLDLGL
       ::::: .    .:: :.:.. ::: :: ::::::::.::::::::::.:...::.::. :
CCDS42 KKKEVPKPECSESYTLTPEVGELIEKVRKAHQETFPALCQLGKYTTNNSSEQRVSLDIDL
     160       170       180       190       200       210         

        230       240       250       260       270       280      
pF1KB5 WDKFSELATKCIIKIVEFAKRLPGFTGLSIADQITLLKAACLDILMLRICTRYTPEQDTM
       :::::::.:::::: :::::.::::: :.::::::::::::::::.::::::::::::::
CCDS42 WDKFSELSTKCIIKTVEFAKQLPGFTTLTIADQITLLKAACLDILILRICTRYTPEQDTM
     220       230       240       250       260       270         

        290       300       310       320       330       340      
pF1KB5 TFSDGLTLNRTQMHNAGFGPLTDLVFAFAGQLLPLEMDDTETGLLSAICLICGDRMDLEE
       :::::::::::::::::::::::::::::.:::::::::.:::::::::::::::.:::.
CCDS42 TFSDGLTLNRTQMHNAGFGPLTDLVFAFANQLLPLEMDDAETGLLSAICLICGDRQDLEQ
     280       290       300       310       320       330         

        350       360       370       380       390       400      
pF1KB5 PEKVDKLQEPLLEALRLYARRRRPSQPYMFPRMLMKITDLRGISTKGAERAITLKMEIPG
       :..:: :::::::::..:.:.::::.:.:::.:::::::::.::.:::::.:::::::::
CCDS42 PDRVDMLQEPLLEALKVYVRKRRPSRPHMFPKMLMKITDLRSISAKGAERVITLKMEIPG
     340       350       360       370       380       390         

        410       420       430       440       450                
pF1KB5 PMPPLIREMLENPEMFEDDSSQPGPHPNASSEDEVPGGQGKGGLKSPA            
        :::::.::::: : ..  :.:::            ::.  :::  :             
CCDS42 SMPPLIQEMLENSEGLDTLSGQPGG-----------GGRDGGGLAPPPGSCSPSLSPSSN
     400       410       420                  430       440        

CCDS42 RSSPATHSP
      450       

>>CCDS46775.1 RARB gene_id:5915|Hs108|chr3                (336 aa)
 initn: 1784 init1: 1760 opt: 1777  Z-score: 1495.4  bits: 285.5 E(32554): 5.7e-77
Smith-Waterman score: 1777; 79.0% identity (91.6% similar) in 333 aa overlap (122-453:1-333)

             100       110       120       130       140       150 
pF1KB5 VCNDKSSGYHYGVSSCEGCKGFFRRSIQKNMVYTCHRDKNCIINKVTRNRCQYCRLQKCF
                                     :.:::::::::.::::::::::::::::::
CCDS46                               MIYTCHRDKNCVINKVTRNRCQYCRLQKCF
                                             10        20        30

             160       170       180       190       200       210 
pF1KB5 EVGMSKEAVRNDRNKKKKEVKEEGSPDSYELSPQLEELITKVSKAHQETFPSLCQLGKYT
       :::::::.:::::::::::....   .:::.. .:..:  :. :::::::::::::::::
CCDS46 EVGMSKESVRNDRNKKKKETSKQECTESYEMTAELDDLTEKIRKAHQETFPSLCQLGKYT
               40        50        60        70        80        90

             220       230       240       250       260       270 
pF1KB5 TNSSADHRVQLDLGLWDKFSELATKCIIKIVEFAKRLPGFTGLSIADQITLLKAACLDIL
       :::::::::.:::::::::::::::::::::::::::::::::.::::::::::::::::
CCDS46 TNSSADHRVRLDLGLWDKFSELATKCIIKIVEFAKRLPGFTGLTIADQITLLKAACLDIL
              100       110       120       130       140       150

             280       290       300       310       320       330 
pF1KB5 MLRICTRYTPEQDTMTFSDGLTLNRTQMHNAGFGPLTDLVFAFAGQLLPLEMDDTETGLL
       .::::::::::::::::::::::::::::::::::::::::.::.:::::::::::::::
CCDS46 ILRICTRYTPEQDTMTFSDGLTLNRTQMHNAGFGPLTDLVFTFANQLLPLEMDDTETGLL
              160       170       180       190       200       210

             340       350       360       370       380       390 
pF1KB5 SAICLICGDRMDLEEPEKVDKLQEPLLEALRLYARRRRPSQPYMFPRMLMKITDLRGIST
       ::::::::::.::::: :::::::::::::..: :.::::.:.:::..::::::::.::.
CCDS46 SAICLICGDRQDLEEPTKVDKLQEPLLEALKIYIRKRRPSKPHMFPKILMKITDLRSISA
              220       230       240       250       260       270

             400       410       420       430       440       450 
pF1KB5 KGAERAITLKMEIPGPMPPLIREMLENPEMFEDDSSQPGPHPNASSEDEVPGGQGKGGL-
       :::::.::::::::: :::::.::::: :  :  . . . .    : .  :..  ..:. 
CCDS46 KGAERVITLKMEIPGSMPPLIQEMLENSEGHEPLTPSSSGNTAEHSPSISPSSVENSGVS
              280       290       300       310       320       330

             
pF1KB5 KSPA  
       .::   
CCDS46 QSPLVQ
             

>>CCDS45671.1 RARA gene_id:5914|Hs108|chr17               (365 aa)
 initn: 1533 init1: 1460 opt: 1460  Z-score: 1230.1  bits: 236.5 E(32554): 3.4e-62
Smith-Waterman score: 1469; 75.2% identity (87.9% similar) in 298 aa overlap (156-453:57-343)

         130       140       150       160       170       180     
pF1KB5 CHRDKNCIINKVTRNRCQYCRLQKCFEVGMSKEAVRNDRNKKKKEVKEEGSPDSYELSPQ
                                     :  .:::::::::::: .    .:: :.:.
CCDS45 FFPPMLGGLSPPGALTTLQHQLPVSGYSTPSPATVRNDRNKKKKEVPKPECSESYTLTPE
         30        40        50        60        70        80      

         190       200       210       220       230       240     
pF1KB5 LEELITKVSKAHQETFPSLCQLGKYTTNSSADHRVQLDLGLWDKFSELATKCIIKIVEFA
       . ::: :: ::::::::.::::::::::.:...::.::. ::::::::.:::::: ::::
CCDS45 VGELIEKVRKAHQETFPALCQLGKYTTNNSSEQRVSLDIDLWDKFSELSTKCIIKTVEFA
         90       100       110       120       130       140      

         250       260       270       280       290       300     
pF1KB5 KRLPGFTGLSIADQITLLKAACLDILMLRICTRYTPEQDTMTFSDGLTLNRTQMHNAGFG
       :.::::: :.::::::::::::::::.:::::::::::::::::::::::::::::::::
CCDS45 KQLPGFTTLTIADQITLLKAACLDILILRICTRYTPEQDTMTFSDGLTLNRTQMHNAGFG
        150       160       170       180       190       200      

         310       320       330       340       350       360     
pF1KB5 PLTDLVFAFAGQLLPLEMDDTETGLLSAICLICGDRMDLEEPEKVDKLQEPLLEALRLYA
       ::::::::::.:::::::::.:::::::::::::::.:::.:..:: :::::::::..:.
CCDS45 PLTDLVFAFANQLLPLEMDDAETGLLSAICLICGDRQDLEQPDRVDMLQEPLLEALKVYV
        210       220       230       240       250       260      

         370       380       390       400       410       420     
pF1KB5 RRRRPSQPYMFPRMLMKITDLRGISTKGAERAITLKMEIPGPMPPLIREMLENPEMFEDD
       :.::::.:.:::.:::::::::.::.:::::.::::::::: :::::.::::: : ..  
CCDS45 RKRRPSRPHMFPKMLMKITDLRSISAKGAERVITLKMEIPGSMPPLIQEMLENSEGLDTL
        270       280       290       300       310       320      

         430       440       450                         
pF1KB5 SSQPGPHPNASSEDEVPGGQGKGGLKSPA                     
       :.:::            ::.  :::  :                      
CCDS45 SGQPGG-----------GGRDGGGLAPPPGSCSPSLSPSSNRSSPATHSP
        330                  340       350       360     

>>CCDS35172.1 RXRA gene_id:6256|Hs108|chr9                (462 aa)
 initn: 770 init1: 406 opt: 739  Z-score: 626.5  bits: 125.2 E(32554): 1.4e-28
Smith-Waterman score: 756; 32.6% identity (60.4% similar) in 432 aa overlap (13-419:36-458)

                                 10        20          30          
pF1KB5                   MATNKERLFAAGALGPGSGYPGAGF-PFA-FPGALRG-SPPF
                                     .:::: : ::    :.. . . . : .:::
CCDS35 FLPLDFSTQVNSSLTSPTGRGSMAAPSLHPSLGPGIGSPGQLHSPISTLSSPINGMGPPF
          10        20        30        40        50        60     

      40          50        60              70                   80
pF1KB5 EMLSPSF--RGLGQPDLPKEMASLSVETQST------SSEEM-----------VPSSPSP
        ..:  .  .... :  :    : .    :.      :::..           ::. :: 
CCDS35 SVISSPMGPHSMSVPTTPTLGFSTGSPQLSSPMNPVSSSEDIKPPLGLNGVLKVPAHPSG
          70        80        90       100       110       120     

               90       100       110       120       130       140
pF1KB5 PPPPRVYKPCFVCNDKSSGYHYGVSSCEGCKGFFRRSIQKNMVYTCHRDKNCIINKVTRN
            . . : .:.:.::: :::: :::::::::.:...:...:::. .:.:.:.:  ::
CCDS35 NMASFTKHICAICGDRSSGKHYGVYSCEGCKGFFKRTVRKDLTYTCRDNKDCLIDKRQRN
         130       140       150       160       170       180     

              150       160         170       180       190        
pF1KB5 RCQYCRLQKCFEVGMSKEAVRNDRN--KKKKEVKEEGSPDSYELSPQLEELITKVSKAHQ
       :::::: :::. .::..:::...:.  : ..: . :.. .. :  :   : : ..  : .
CCDS35 RCQYCRYQKCLAMGMKREAVQEERQRGKDRNENEVESTSSANEDMPV--ERILEAELAVE
         190       200       210       220       230         240   

      200       210       220       230       240       250        
pF1KB5 ETFPSLCQLGKYTTNSSADHRVQLDLGLWDKFSELATKCIIKIVEFAKRLPGFTGLSIAD
           .  . .   . :: .  :        .. . : : .. .::.:::.: :. : . :
CCDS35 PKTETYVEANMGLNPSSPNDPV-------TNICQAADKQLFTLVEWAKRIPHFSELPLDD
           250       260              270       280       290      

      260       270       280       290       300       310        
pF1KB5 QITLLKAACLDILMLRICTRYTPEQDTMTFSDGLTLNRTQMHNAGFGPLTDLVFA-FAGQ
       :. ::.:.  ..:.  .  :    .: . .. :: ..:.. :.:: : . : :.. ....
CCDS35 QVILLRAGWNELLIASFSHRSIAVKDGILLATGLHVHRNSAHSAGVGAIFDRVLTELVSK
        300       310       320       330       340       350      

       320       330       340       350       360       370       
pF1KB5 LLPLEMDDTETGLLSAICLICGDRMDLEEPEKVDKLQEPLLEALRLYARRRRPSQPYMFP
       .  ..:: :: : : :: :.  :   : .: .:. :.: .  .:. : ... : ::  : 
CCDS35 MRDMQMDKTELGCLRAIVLFNPDSKGLSNPAEVEALREKVYASLEAYCKHKYPEQPGRFA
        360       370       380       390       400       410      

       380       390       400       410       420       430       
pF1KB5 RMLMKITDLRGISTKGAERAITLKMEIPGPMPPLIREMLENPEMFEDDSSQPGPHPNASS
       ..:...  ::.:. :  :. . .:.    :.  .. :::: :                  
CCDS35 KLLLRLPALRSIGLKCLEHLFFFKLIGDTPIDTFLMEMLEAPHQMT              
        420       430       440       450       460                

       440       450    
pF1KB5 EDEVPGGQGKGGLKSPA




454 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sat Nov  5 10:23:39 2016 done: Sat Nov  5 10:23:39 2016
 Total Scan time:  3.290 Total Display time:  0.070

Function used was FASTA [36.3.4 Apr, 2011]
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