FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB7909, 134 aa
  1>>>pF1KB7909 134 - 134 aa - 134 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.9258+/-0.000552; mu= 10.0604+/- 0.033
 mean_var=92.4177+/-18.603, 0's: 0 Z-trim(115.7): 3  B-trim: 0 in 0/53
 Lambda= 0.133413
 statistics sampled from 16298 (16299) to 16298 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.84), E-opt: 0.2 (0.501), width:  16
 Scan time:  1.880

The best scores are:                                      opt bits E(32554)
CCDS275.2 ZNF593 gene_id:51042|Hs108|chr1          ( 134)  917 184.9 1.2e-47


>>CCDS275.2 ZNF593 gene_id:51042|Hs108|chr1               (134 aa)
 initn: 917 init1: 917 opt: 917  Z-score: 968.6  bits: 184.9 E(32554): 1.2e-47
Smith-Waterman score: 917; 100.0% identity (100.0% similar) in 134 aa overlap (1-134:1-134)

               10        20        30        40        50        60
pF1KB7 MGRSRRTGAHRAHSLARQMKAKRRRPDLDEIHRELRPQGSARPQPDPNAEFDPDLPGGGL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS27 MGRSRRTGAHRAHSLARQMKAKRRRPDLDEIHRELRPQGSARPQPDPNAEFDPDLPGGGL
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB7 HRCLACARYFIDSTNLKTHFRSKDHKKRLKQLSVEPYSQEEAERAAGMGSYVPPRRLAVP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS27 HRCLACARYFIDSTNLKTHFRSKDHKKRLKQLSVEPYSQEEAERAAGMGSYVPPRRLAVP
               70        80        90       100       110       120

              130    
pF1KB7 TEVSTEVPEMDTST
       ::::::::::::::
CCDS27 TEVSTEVPEMDTST
              130    




134 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sat Nov  5 10:09:24 2016 done: Sat Nov  5 10:09:24 2016
 Total Scan time:  1.880 Total Display time: -0.030

Function used was FASTA [36.3.4 Apr, 2011]