Result of FASTA (ccds) for pF1KB9810
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB9810, 247 aa
  1>>>pF1KB9810 247 - 247 aa - 247 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.5711+/-0.000806; mu= 12.8301+/- 0.048
 mean_var=65.1817+/-12.811, 0's: 0 Z-trim(107.5): 14  B-trim: 0 in 0/48
 Lambda= 0.158859
 statistics sampled from 9591 (9603) to 9591 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.69), E-opt: 0.2 (0.295), width:  16
 Scan time:  2.320

The best scores are:                                      opt bits E(32554)
CCDS7866.1 BDNF gene_id:627|Hs108|chr11            ( 247) 1652 387.1 5.8e-108
CCDS7865.1 BDNF gene_id:627|Hs108|chr11            ( 255) 1652 387.1 5.9e-108
CCDS41628.1 BDNF gene_id:627|Hs108|chr11           ( 262) 1652 387.1 6.1e-108
CCDS44558.1 BDNF gene_id:627|Hs108|chr11           ( 329) 1652 387.2 7.4e-108
CCDS8538.1 NTF3 gene_id:4908|Hs108|chr12           ( 257)  574 140.1 1.4e-33
CCDS44806.1 NTF3 gene_id:4908|Hs108|chr12          ( 270)  574 140.1 1.5e-33
CCDS882.1 NGF gene_id:4803|Hs108|chr1              ( 241)  496 122.2 3.2e-28
CCDS12754.1 NTF4 gene_id:4909|Hs108|chr19          ( 210)  475 117.4   8e-27


>>CCDS7866.1 BDNF gene_id:627|Hs108|chr11                 (247 aa)
 initn: 1652 init1: 1652 opt: 1652  Z-score: 2051.8  bits: 387.1 E(32554): 5.8e-108
Smith-Waterman score: 1652; 100.0% identity (100.0% similar) in 247 aa overlap (1-247:1-247)

               10        20        30        40        50        60
pF1KB9 MTILFLTMVISYFGCMKAAPMKEANIRGQGGLAYPGVRTHGTLESVNGPKAGSRGLTSLA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS78 MTILFLTMVISYFGCMKAAPMKEANIRGQGGLAYPGVRTHGTLESVNGPKAGSRGLTSLA
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB9 DTFEHVIEELLDEDQKVRPNEENNKDADLYTSRVMLSSQVPLEPPLLFLLEEYKNYLDAA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS78 DTFEHVIEELLDEDQKVRPNEENNKDADLYTSRVMLSSQVPLEPPLLFLLEEYKNYLDAA
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB9 NMSMRVRRHSDPARRGELSVCDSISEWVTAADKKTAVDMSGGTVTVLEKVPVSKGQLKQY
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS78 NMSMRVRRHSDPARRGELSVCDSISEWVTAADKKTAVDMSGGTVTVLEKVPVSKGQLKQY
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB9 FYETKCNPMGYTKEGCRGIDKRHWNSQCRTTQSYVRALTMDSKKRIGWRFIRIDTSCVCT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS78 FYETKCNPMGYTKEGCRGIDKRHWNSQCRTTQSYVRALTMDSKKRIGWRFIRIDTSCVCT
              190       200       210       220       230       240

              
pF1KB9 LTIKRGR
       :::::::
CCDS78 LTIKRGR
              

>>CCDS7865.1 BDNF gene_id:627|Hs108|chr11                 (255 aa)
 initn: 1652 init1: 1652 opt: 1652  Z-score: 2051.6  bits: 387.1 E(32554): 5.9e-108
Smith-Waterman score: 1652; 100.0% identity (100.0% similar) in 247 aa overlap (1-247:9-255)

                       10        20        30        40        50  
pF1KB9         MTILFLTMVISYFGCMKAAPMKEANIRGQGGLAYPGVRTHGTLESVNGPKAG
               ::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS78 MFHQVRRVMTILFLTMVISYFGCMKAAPMKEANIRGQGGLAYPGVRTHGTLESVNGPKAG
               10        20        30        40        50        60

             60        70        80        90       100       110  
pF1KB9 SRGLTSLADTFEHVIEELLDEDQKVRPNEENNKDADLYTSRVMLSSQVPLEPPLLFLLEE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS78 SRGLTSLADTFEHVIEELLDEDQKVRPNEENNKDADLYTSRVMLSSQVPLEPPLLFLLEE
               70        80        90       100       110       120

            120       130       140       150       160       170  
pF1KB9 YKNYLDAANMSMRVRRHSDPARRGELSVCDSISEWVTAADKKTAVDMSGGTVTVLEKVPV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS78 YKNYLDAANMSMRVRRHSDPARRGELSVCDSISEWVTAADKKTAVDMSGGTVTVLEKVPV
              130       140       150       160       170       180

            180       190       200       210       220       230  
pF1KB9 SKGQLKQYFYETKCNPMGYTKEGCRGIDKRHWNSQCRTTQSYVRALTMDSKKRIGWRFIR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS78 SKGQLKQYFYETKCNPMGYTKEGCRGIDKRHWNSQCRTTQSYVRALTMDSKKRIGWRFIR
              190       200       210       220       230       240

            240       
pF1KB9 IDTSCVCTLTIKRGR
       :::::::::::::::
CCDS78 IDTSCVCTLTIKRGR
              250     

>>CCDS41628.1 BDNF gene_id:627|Hs108|chr11                (262 aa)
 initn: 1652 init1: 1652 opt: 1652  Z-score: 2051.4  bits: 387.1 E(32554): 6.1e-108
Smith-Waterman score: 1652; 100.0% identity (100.0% similar) in 247 aa overlap (1-247:16-262)

                              10        20        30        40     
pF1KB9                MTILFLTMVISYFGCMKAAPMKEANIRGQGGLAYPGVRTHGTLES
                      :::::::::::::::::::::::::::::::::::::::::::::
CCDS41 MQSREEEWFHQVRRVMTILFLTMVISYFGCMKAAPMKEANIRGQGGLAYPGVRTHGTLES
               10        20        30        40        50        60

          50        60        70        80        90       100     
pF1KB9 VNGPKAGSRGLTSLADTFEHVIEELLDEDQKVRPNEENNKDADLYTSRVMLSSQVPLEPP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS41 VNGPKAGSRGLTSLADTFEHVIEELLDEDQKVRPNEENNKDADLYTSRVMLSSQVPLEPP
               70        80        90       100       110       120

         110       120       130       140       150       160     
pF1KB9 LLFLLEEYKNYLDAANMSMRVRRHSDPARRGELSVCDSISEWVTAADKKTAVDMSGGTVT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS41 LLFLLEEYKNYLDAANMSMRVRRHSDPARRGELSVCDSISEWVTAADKKTAVDMSGGTVT
              130       140       150       160       170       180

         170       180       190       200       210       220     
pF1KB9 VLEKVPVSKGQLKQYFYETKCNPMGYTKEGCRGIDKRHWNSQCRTTQSYVRALTMDSKKR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS41 VLEKVPVSKGQLKQYFYETKCNPMGYTKEGCRGIDKRHWNSQCRTTQSYVRALTMDSKKR
              190       200       210       220       230       240

         230       240       
pF1KB9 IGWRFIRIDTSCVCTLTIKRGR
       ::::::::::::::::::::::
CCDS41 IGWRFIRIDTSCVCTLTIKRGR
              250       260  

>>CCDS44558.1 BDNF gene_id:627|Hs108|chr11                (329 aa)
 initn: 1652 init1: 1652 opt: 1652  Z-score: 2049.8  bits: 387.2 E(32554): 7.4e-108
Smith-Waterman score: 1652; 100.0% identity (100.0% similar) in 247 aa overlap (1-247:83-329)

                                             10        20        30
pF1KB9                               MTILFLTMVISYFGCMKAAPMKEANIRGQG
                                     ::::::::::::::::::::::::::::::
CCDS44 GCAVYLHVSVEFNKLIPENGFIKFHQVRRVMTILFLTMVISYFGCMKAAPMKEANIRGQG
             60        70        80        90       100       110  

               40        50        60        70        80        90
pF1KB9 GLAYPGVRTHGTLESVNGPKAGSRGLTSLADTFEHVIEELLDEDQKVRPNEENNKDADLY
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 GLAYPGVRTHGTLESVNGPKAGSRGLTSLADTFEHVIEELLDEDQKVRPNEENNKDADLY
            120       130       140       150       160       170  

              100       110       120       130       140       150
pF1KB9 TSRVMLSSQVPLEPPLLFLLEEYKNYLDAANMSMRVRRHSDPARRGELSVCDSISEWVTA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 TSRVMLSSQVPLEPPLLFLLEEYKNYLDAANMSMRVRRHSDPARRGELSVCDSISEWVTA
            180       190       200       210       220       230  

              160       170       180       190       200       210
pF1KB9 ADKKTAVDMSGGTVTVLEKVPVSKGQLKQYFYETKCNPMGYTKEGCRGIDKRHWNSQCRT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 ADKKTAVDMSGGTVTVLEKVPVSKGQLKQYFYETKCNPMGYTKEGCRGIDKRHWNSQCRT
            240       250       260       270       280       290  

              220       230       240       
pF1KB9 TQSYVRALTMDSKKRIGWRFIRIDTSCVCTLTIKRGR
       :::::::::::::::::::::::::::::::::::::
CCDS44 TQSYVRALTMDSKKRIGWRFIRIDTSCVCTLTIKRGR
            300       310       320         

>>CCDS8538.1 NTF3 gene_id:4908|Hs108|chr12                (257 aa)
 initn: 512 init1: 414 opt: 574  Z-score: 716.3  bits: 140.1 E(32554): 1.4e-33
Smith-Waterman score: 582; 45.5% identity (74.2% similar) in 209 aa overlap (40-247:60-256)

      10        20        30        40        50        60         
pF1KB9 ISYFGCMKAAPMKEANIRGQGGLAYPGVRTHGTLESVNGPKAGSRGLTSLADTFEHVIEE
                                     ..:: ....:.   ::  .  ..:. ::  
CCDS85 SLNSLIIKLIQADILKNKLSKQMVDVKENYQSTLPKAEAPREPERGGPA-KSAFQPVIA-
      30        40        50        60        70         80        

      70        80        90       100       110       120         
pF1KB9 LLDEDQKVRPNEENNKDADLYTSRVMLSSQVPLEPPLLFLLEEYKNYLDAANMSMRVRRH
        .: .  .: ... :      . ::.::...::::: :.:.:.: .   .:: . : .:.
CCDS85 -MDTEL-LRQQRRYN------SPRVLLSDSTPLEPPPLYLMEDYVGSPVVANRTSRRKRY
         90        100             110       120       130         

     130        140       150       160       170       180        
pF1KB9 SD-PARRGELSVCDSISEWVTAADKKTAVDMSGGTVTVLEKVPVSKGQLKQYFYETKCNP
       ..  ..::: ::::: : :::  ::..:.:. :  :::: .. .... .:::::::.:. 
CCDS85 AEHKSHRGEYSVCDSESLWVT--DKSSAIDIRGHQVTVLGEIKTGNSPVKQYFYETRCKE
     140       150       160         170       180       190       

      190       200       210       220       230       240        
pF1KB9 MGYTKEGCRGIDKRHWNSQCRTTQSYVRALTMDSKKRIGWRFIRIDTSCVCTLTIKRGR 
          .:.:::::: .::::::.:.:.:::::: ...: .:::.:::::::::.:. : :: 
CCDS85 ARPVKNGCRGIDDKHWNSQCKTSQTYVRALTSENNKLVGWRWIRIDTSCVCALSRKIGRT
       200       210       220       230       240       250       

>>CCDS44806.1 NTF3 gene_id:4908|Hs108|chr12               (270 aa)
 initn: 512 init1: 414 opt: 574  Z-score: 716.0  bits: 140.1 E(32554): 1.5e-33
Smith-Waterman score: 582; 45.5% identity (74.2% similar) in 209 aa overlap (40-247:73-269)

      10        20        30        40        50        60         
pF1KB9 ISYFGCMKAAPMKEANIRGQGGLAYPGVRTHGTLESVNGPKAGSRGLTSLADTFEHVIEE
                                     ..:: ....:.   ::  .  ..:. ::  
CCDS44 SLNSLIIKLIQADILKNKLSKQMVDVKENYQSTLPKAEAPREPERGGPA-KSAFQPVIA-
             50        60        70        80        90        100 

      70        80        90       100       110       120         
pF1KB9 LLDEDQKVRPNEENNKDADLYTSRVMLSSQVPLEPPLLFLLEEYKNYLDAANMSMRVRRH
        .: .  .: ... :      . ::.::...::::: :.:.:.: .   .:: . : .:.
CCDS44 -MDTEL-LRQQRRYN------SPRVLLSDSTPLEPPPLYLMEDYVGSPVVANRTSRRKRY
                110             120       130       140       150  

     130        140       150       160       170       180        
pF1KB9 SD-PARRGELSVCDSISEWVTAADKKTAVDMSGGTVTVLEKVPVSKGQLKQYFYETKCNP
       ..  ..::: ::::: : :::  ::..:.:. :  :::: .. .... .:::::::.:. 
CCDS44 AEHKSHRGEYSVCDSESLWVT--DKSSAIDIRGHQVTVLGEIKTGNSPVKQYFYETRCKE
            160       170         180       190       200       210

      190       200       210       220       230       240        
pF1KB9 MGYTKEGCRGIDKRHWNSQCRTTQSYVRALTMDSKKRIGWRFIRIDTSCVCTLTIKRGR 
          .:.:::::: .::::::.:.:.:::::: ...: .:::.:::::::::.:. : :: 
CCDS44 ARPVKNGCRGIDDKHWNSQCKTSQTYVRALTSENNKLVGWRWIRIDTSCVCALSRKIGRT
              220       230       240       250       260       270

>>CCDS882.1 NGF gene_id:4803|Hs108|chr1                   (241 aa)
 initn: 435 init1: 272 opt: 496  Z-score: 620.1  bits: 122.2 E(32554): 3.2e-28
Smith-Waterman score: 496; 36.9% identity (64.3% similar) in 249 aa overlap (1-247:1-239)

               10        20        30        40        50        60
pF1KB9 MTILFLTMVISYFGCMKAAPMKEANIRGQGGLAYPGVRTHGTLESVNGPKAGSRGLTSLA
       :..:: :.. ...  ..: : .:.:.   .: . :  ..: :  . .   :  :. .. :
CCDS88 MSMLFYTLITAFLIGIQAEPHSESNV--PAGHTIP--QAHWTKLQHSLDTALRRARSAPA
               10        20          30          40        50      

               70        80        90       100       110       120
pF1KB9 DTFEHVIEELLDEDQKVRPNEENNKDADLYTSRVMLSSQVPLEPPLLFLLEEYKNYLDAA
        .   .  ..  . ...  . .  :   : . ::..:.: : :      :.   .     
CCDS88 AA---IAARVAGQTRNITVDPRLFKKRRLRSPRVLFSTQPPREAADTQDLDFEVGGAAPF
            60        70        80        90       100       110   

              130         140       150       160       170        
pF1KB9 NMSMRVRRHSD-PA-RRGELSVCDSISEWVTAADKKTAVDMSGGTVTVLEKVPVSKGQLK
       : . : .: :. :  .:::.:::::.: ::  .:: ::.:..:  : :: .: .... .:
CCDS88 NRTHRSKRSSSHPIFHRGEFSVCDSVSVWV--GDKTTATDIKGKEVMVLGEVNINNSVFK
           120       130       140         150       160       170 

      180       190       200       210       220       230        
pF1KB9 QYFYETKCNPMGYTKEGCRGIDKRHWNSQCRTTQSYVRALTMDSKKRIGWRFIRIDTSCV
       :::.::::   . .  ::::::..:::: : ::...:.:::::.:.  .::::::::.::
CCDS88 QYFFETKCRDPNPVDSGCRGIDSKHWNSYCTTTHTFVKALTMDGKQ-AAWRFIRIDTACV
             180       190       200       210        220       230

      240         
pF1KB9 CTLTIKRGR  
       :.:. :  :  
CCDS88 CVLSRKAVRRA
              240 

>>CCDS12754.1 NTF4 gene_id:4909|Hs108|chr19               (210 aa)
 initn: 480 init1: 284 opt: 475  Z-score: 595.1  bits: 117.4 E(32554): 8e-27
Smith-Waterman score: 547; 52.0% identity (71.1% similar) in 173 aa overlap (88-247:40-209)

        60        70        80        90       100       110       
pF1KB9 SLADTFEHVIEELLDEDQKVRPNEENNKDADLYTSRVMLSSQVPLEPPLLFLLEE--YKN
                                     :: . ::.::  .:  ::::::::   ...
CCDS12 PILLLFLLPSVPIESQPPPSTLPPFLAPEWDLLSPRVVLSRGAPAGPPLLFLLEAGAFRE
      10        20        30        40        50        60         

          120       130        140       150       160       170   
pF1KB9 YLDA-ANMSMRVRRHSDPA-RRGELSVCDSISEWVTAADKKTAVDMSGGTVTVLEKVPVS
          : :: : :   .. :: :::::.:::..: :::  :..::::. :  : :: .::..
CCDS12 SAGAPANRSRRGVSETAPASRRGELAVCDAVSGWVT--DRRTAVDLRGREVEVLGEVPAA
      70        80        90       100         110       120       

            180               190       200       210       220    
pF1KB9 KGQ-LKQYFYETKCN--------PMGYTKEGCRGIDKRHWNSQCRTTQSYVRALTMDSKK
        :. :.:::.::.:.        : :    ::::.:.::: :.:.. :::::::: :.. 
CCDS12 GGSPLRQYFFETRCKADNAEEGGP-GAGGGGCRGVDRRHWVSECKAKQSYVRALTADAQG
       130       140       150        160       170       180      

          230       240        
pF1KB9 RIGWRFIRIDTSCVCTLTIKRGR 
       :.:::.:::::.:::::  . :: 
CCDS12 RVGWRWIRIDTACVCTLLSRTGRA
        190       200       210




247 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 19:09:16 2016 done: Fri Nov  4 19:09:17 2016
 Total Scan time:  2.320 Total Display time:  0.010

Function used was FASTA [36.3.4 Apr, 2011]
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