Result of FASTA (ccds) for pF1KB9629
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB9629, 337 aa
  1>>>pF1KB9629 337 - 337 aa - 337 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 7.4999+/-0.000782; mu= 7.8451+/- 0.048
 mean_var=152.1036+/-30.396, 0's: 0 Z-trim(113.6): 45  B-trim: 0 in 0/54
 Lambda= 0.103993
 statistics sampled from 14210 (14255) to 14210 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.78), E-opt: 0.2 (0.438), width:  16
 Scan time:  2.190

The best scores are:                                      opt bits E(32554)
CCDS5434.1 NEUROD6 gene_id:63974|Hs108|chr7        ( 337) 2301 356.3   2e-98
CCDS2283.1 NEUROD1 gene_id:4760|Hs108|chr2         ( 356) 1011 162.8 3.9e-40
CCDS8886.1 NEUROD4 gene_id:58158|Hs108|chr12       ( 331)  827 135.2 7.5e-32
CCDS11338.1 NEUROD2 gene_id:4761|Hs108|chr17       ( 382)  788 129.4 4.8e-30


>>CCDS5434.1 NEUROD6 gene_id:63974|Hs108|chr7             (337 aa)
 initn: 2301 init1: 2301 opt: 2301  Z-score: 1880.4  bits: 356.3 E(32554): 2e-98
Smith-Waterman score: 2301; 100.0% identity (100.0% similar) in 337 aa overlap (1-337:1-337)

               10        20        30        40        50        60
pF1KB9 MLTLPFDESVVMPESQMCRKFSRECEDQKQIKKPESFSKQIVLRGKSIKRAPGEETEKEE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS54 MLTLPFDESVVMPESQMCRKFSRECEDQKQIKKPESFSKQIVLRGKSIKRAPGEETEKEE
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB9 EEEDREEEDENGLPRRRGLRKKKTTKLRLERVKFRRQEANARERNRMHGLNDALDNLRKV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS54 EEEDREEEDENGLPRRRGLRKKKTTKLRLERVKFRRQEANARERNRMHGLNDALDNLRKV
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB9 VPCYSKTQKLSKIETLRLAKNYIWALSEILRIGKRPDLLTFVQNLCKGLSQPTTNLVAGC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS54 VPCYSKTQKLSKIETLRLAKNYIWALSEILRIGKRPDLLTFVQNLCKGLSQPTTNLVAGC
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB9 LQLNARSFLMGQGGEAAHHTRSPYSTFYPPYHSPELTTPPGHGTLDNSKSMKPYNYCSAY
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS54 LQLNARSFLMGQGGEAAHHTRSPYSTFYPPYHSPELTTPPGHGTLDNSKSMKPYNYCSAY
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB9 ESFYESTSPECASPQFEGPLSPPPINYNGIFSLKQEETLDYGKNYNYGMHYCAVPPRGPL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS54 ESFYESTSPECASPQFEGPLSPPPINYNGIFSLKQEETLDYGKNYNYGMHYCAVPPRGPL
              250       260       270       280       290       300

              310       320       330       
pF1KB9 GQGAMFRLPTDSHFPYDLHLRSQSLTMQDELNAVFHN
       :::::::::::::::::::::::::::::::::::::
CCDS54 GQGAMFRLPTDSHFPYDLHLRSQSLTMQDELNAVFHN
              310       320       330       

>>CCDS2283.1 NEUROD1 gene_id:4760|Hs108|chr2              (356 aa)
 initn: 941 init1: 724 opt: 1011  Z-score: 834.1  bits: 162.8 E(32554): 3.9e-40
Smith-Waterman score: 1053; 49.9% identity (71.9% similar) in 359 aa overlap (2-337:1-356)

               10          20            30        40        50    
pF1KB9 MLTLPFDESVVM--PESQMCRKFSREC----EDQKQIKKPESFSKQIVLRGKSIKRAPGE
        .:  ..:: .:  :. :   ... ::    .....  : :.  . .  .  :.. .  :
CCDS22  MTKSYSESGLMGEPQPQGPPSWTDECLSSQDEEHEADKKEDDLETMNAEEDSLRNGGEE
                10        20        30        40        50         

             60        70        80        90       100       110  
pF1KB9 ETEKE--EEEEDREEEDENGLPRRRGLRKKKTTKLRLERVKFRRQEANARERNRMHGLND
       : : :  ::::..::::..  :.::: .::: :: :::: :.::..::::::::::::: 
CCDS22 EDEDEDLEEEEEEEEEDDDQKPKRRGPKKKKMTKARLERFKLRRMKANARERNRMHGLNA
      60        70        80        90       100       110         

            120       130       140       150       160       170  
pF1KB9 ALDNLRKVVPCYSKTQKLSKIETLRLAKNYIWALSEILRIGKRPDLLTFVQNLCKGLSQP
       ::::::::::::::::::::::::::::::::::::::: :: :::..:::.::::::::
CCDS22 ALDNLRKVVPCYSKTQKLSKIETLRLAKNYIWALSEILRSGKSPDLVSFVQTLCKGLSQP
     120       130       140       150       160       170         

            180       190       200          210       220         
pF1KB9 TTNLVAGCLQLNARSFLMGQGGEAAHHTRSPYSTF--YP-PYHSPELTTPPGHGTLDNSK
       :::::::::::: :.::  :. .   :  .  ..:  .:  :.:: : .:: .::.:.:.
CCDS22 TTNLVAGCLQLNPRTFLPEQNQDMPPHLPTASASFPVHPYSYQSPGLPSPP-YGTMDSSH
     180       190       200       210       220       230         

     230           240       250       260       270       280     
pF1KB9 SMK----PYNYCSAYESFYESTSPECASPQFEGPLSPPPINYNGIFSLKQEETLDYGKNY
        ..    :. : .: : :.::   .:.::.:.:::::: .. :: ::.:.: . .. :::
CCDS22 VFHVKPPPHAYSAALEPFFESPLTDCTSPSFDGPLSPP-LSINGNFSFKHEPSAEFEKNY
      240       250       260       270        280       290       

         290       300               310       320       330       
pF1KB9 NYGMHYCAVPPRGPLGQGAMF--------RLPTDSHFPYDLHLRSQSLTMQDELNAVFHN
        . ::: :.   :  ..:..:        ..: :. . .: : . . . :. .:::.::.
CCDS22 AFTMHYPAATLAGAQSHGSIFSGTAAPRCEIPIDNIMSFDSHSHHERV-MSAQLNAIFHD
       300       310       320       330       340        350      

>>CCDS8886.1 NEUROD4 gene_id:58158|Hs108|chr12            (331 aa)
 initn: 737 init1: 737 opt: 827  Z-score: 685.4  bits: 135.2 E(32554): 7.5e-32
Smith-Waterman score: 827; 51.3% identity (72.3% similar) in 267 aa overlap (54-318:49-307)

            30        40        50        60        70        80   
pF1KB9 ECEDQKQIKKPESFSKQIVLRGKSIKRAPGEETEKEEEEEDREEEDENGLPRRRGLRKKK
                                     :: .. ::::..::. :.  :.::: .:::
CCDS88 SWMDKGLGSQNEVKEEESRPGTYGMLSSLTEEHDSIEEEEEEEEDGEK--PKRRGPKKKK
       20        30        40        50        60          70      

            90       100       110       120       130       140   
pF1KB9 TTKLRLERVKFRRQEANARERNRMHGLNDALDNLRKVVPCYSKTQKLSKIETLRLAKNYI
        :: :::: . :: .::::::.:::::::::::::.:.::::::::::::::::::.:::
CCDS88 MTKARLERFRARRVKANARERTRMHGLNDALDNLRRVMPCYSKTQKLSKIETLRLARNYI
         80        90       100       110       120       130      

           150       160       170       180       190       200   
pF1KB9 WALSEILRIGKRPDLLTFVQNLCKGLSQPTTNLVAGCLQLNARSFLMGQGGEAAHHTRSP
       :::::.:. :. :.   ::. :::::::::.:::::::::. .: :. .  . .    : 
CCDS88 WALSEVLETGQTPEGKGFVEMLCKGLSQPTSNLVAGCLQLGPQSVLLEKHEDKSPICDSA
        140       150       160       170       180       190      

           210       220        230       240       250       260  
pF1KB9 YSTFYPPYHSPELTTPPGHGTLDNSK-SMKPYNYCSAYESFYESTSPECASPQFEGPLSP
        :.    :.:: : .:: .: ...    .::  . :  :: . :  :.:..: .::::.:
CCDS88 ISVHNFNYQSPGLPSPP-YGHMETHLLHLKPQVFKSLGESSFGSHLPDCSTPPYEGPLTP
        200       210        220       230       240       250     

            270       280       290       300       310        320 
pF1KB9 PPINYNGIFSLKQEETLDYGKNYNYGMHYCAVPPRGPLGQGAMFRLPTDSHFP-YDLHLR
       : .. .: :::::. . :  :.:..  ::    : . :..: .   : ..  : ::.   
CCDS88 P-LSISGNFSLKQDGSPDLEKSYSFMPHY----PSSSLSSGHVHSTPFQAGTPRYDVPID
          260       270       280           290       300       310

             330            
pF1KB9 SQSLTMQDELNAVFHN     
                            
CCDS88 MSYDSYPHHGIGTQLNTVFTE
              320       330 

>>CCDS11338.1 NEUROD2 gene_id:4761|Hs108|chr17            (382 aa)
 initn: 1037 init1: 696 opt: 788  Z-score: 652.9  bits: 129.4 E(32554): 4.8e-30
Smith-Waterman score: 1014; 51.7% identity (72.1% similar) in 333 aa overlap (34-337:51-382)

            10        20        30        40        50        60   
pF1KB9 LPFDESVVMPESQMCRKFSRECEDQKQIKKPESFSKQIVLRGKSIKRAPGEETEKEEE--
                                     :   .: . :::.   .:   :...: :  
CCDS11 WGDGEDDEPRSDKGDAPPPPPPAPGPGAPGPARAAKPVPLRGEEGTEATLAEVKEEGELG
               30        40        50        60        70        80

               70               80        90       100       110   
pF1KB9 -EEDREEEDENGL-------PRRRGLRKKKTTKLRLERVKFRRQEANARERNRMHGLNDA
        ::..:::.:.::       :..:: .:.: :: :::: :.:::.:::::::::: :: :
CCDS11 GEEEEEEEEEEGLDEAEGERPKKRGPKKRKMTKARLERSKLRRQKANARERNRMHDLNAA
               90       100       110       120       130       140

           120       130       140       150       160       170   
pF1KB9 LDNLRKVVPCYSKTQKLSKIETLRLAKNYIWALSEILRIGKRPDLLTFVQNLCKGLSQPT
       :::::::::::::::::::::::::::::::::::::: ::::::...::.:::::::::
CCDS11 LDNLRKVVPCYSKTQKLSKIETLRLAKNYIWALSEILRSGKRPDLVSYVQTLCKGLSQPT
              150       160       170       180       190       200

           180       190          200       210       220          
pF1KB9 TNLVAGCLQLNARSFLMGQGGEAA---HHTRSPYSTFYPPYHSPELTTPPGH--GTLDN-
       :::::::::::.:.::  ::...:   : . .:..    ::   .:.    .  : : . 
CCDS11 TNLVAGCLQLNSRNFLTEQGADGAGRFHGSGGPFAMHPYPYPCSRLAGAQCQAAGGLGGG
              210       220       230       240       250       260

        230       240            250       260       270       280 
pF1KB9 -SKSMKPYNYCSAYESFYEST-----SPECASPQFEGPLSPPPINYNGIFSLKQEETLDY
        ..... ..::.:::..: ..     ::.  : ..::::::: .  :: :::::. . :.
CCDS11 AAHALRTHGYCAAYETLYAAAGGGGASPDYNSSEYEGPLSPP-LCLNGNFSLKQDSSPDH
              270       280       290       300        310         

             290       300              310       320       330    
pF1KB9 GKNYNYGMHYCAVPPRGPLGQGAMFR-------LPTDSHFPYDLHLRSQSLTMQDELNAV
        :.:.:.::: :.:   : :.: .:        . ... . ::.::. .   : .:::: 
CCDS11 EKSYHYSMHYSALPGSRPTGHGLVFGSSAVRGGVHSENLLSYDMHLHHDRGPMYEELNAF
     320       330       340       350       360       370         

          
pF1KB9 FHN
       :::
CCDS11 FHN
     380  




337 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 17:49:13 2016 done: Fri Nov  4 17:49:14 2016
 Total Scan time:  2.190 Total Display time: -0.010

Function used was FASTA [36.3.4 Apr, 2011]
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