GENSCAN 1.0	Date run:  4-Nov-116	Time: 17:13:03

Sequence gi568815576r:28695549_28900524 : 204976 bp : 45.37% C+G : Isochore 2 (43 - 51 C+G%)

Parameter matrix: HumanIso.smat

Predicted genes/exons:

Gn.Ex Type S .Begin ...End .Len Fr Ph I/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

 1.09 Intr -   1439   1353   87  2  0   44  116    17 0.031   0.27
 1.08 Intr -   4389   4290  100  2  1  118   98   102 0.894  14.31
 1.07 Intr -   8018   7957   62  2  2   94   87    68 0.964   4.83
 1.06 Intr -  14511  14458   54  0  0   74  103    48 0.942   4.08
 1.05 Intr -  16469  16361  109  1  1  105   92    74 0.999   9.79
 1.04 Intr -  23937  23847   91  1  1   97   94    26 0.959   3.15
 1.03 Intr -  29576  29429  148  2  1   55   85    43 0.742   0.51
 1.02 Intr -  29819  29695  125  0  2   88   73   124 0.752  11.20
 1.01 Init -  39173  38855  319  2  1   63   91   176 0.864  12.90
 1.00 Prom -  39576  39537   40                              -4.66

 2.00 Prom +  40031  40070   40                              -4.46
 2.01 Init +  46548  46783  236  2  2   50   72   130 0.496   3.21
 2.02 Intr +  48334  48430   97  1  1   84   70    64 0.719   4.21
 2.03 Intr +  49067  49156   90  1  0   59   61   125 0.992   7.09
 2.04 Intr +  50316  50460  145  2  1   79   62   172 0.683  13.56
 2.05 Term +  61530  61621   92  1  2  101   32    63 0.082  -0.12
 2.06 PlyA +  61646  61651    6                               1.05

 3.00 Prom +  65849  65888   40                              -5.36
 3.01 Init +  77302  77486  185  0  2   72   89   146 0.996  10.50
 3.02 Intr +  78177  78230   54  0  0   99   80    76 0.976   5.99
 3.03 Intr +  85400  85624  225  2  0   99   99   133 0.978  12.60
 3.04 Intr +  87960  88097  138  0  0   46   92   125 0.863   8.28
 3.05 Term +  88208  88241   34  2  1   90   50     8 0.386  -5.74
 3.06 PlyA +  88480  88485    6                               1.05

 4.05 PlyA -  89550  89545    6                               1.05
 4.04 Term - 100184  99627  558  2  0   88   49   167 0.909   7.15
 4.03 Intr - 101657 101529  129  2  0   76   94   112 0.941  11.49
 4.02 Intr - 103605 103509   97  2  1  123   83   123 0.909  15.31
 4.01 Init - 104976 104750  227  0  2   74   64   246 0.978  17.21
 4.00 Prom - 107259 107220   40                              -5.26

 5.00 Prom + 107584 107623   40                              -4.36
 5.01 Sngl + 130559 130882  324  1  0   87   32   136 0.654   3.90
 5.02 PlyA + 134945 134950    6                               1.05

 6.00 Prom + 136172 136211   40                              -4.86
 6.01 Init + 138465 138708  244  2  1  103   74    97 0.530   7.70
 6.02 Term + 141461 141594  134  0  2  100   38    75 0.529   1.95
 6.03 PlyA + 143200 143205    6                               1.05

 7.00 Prom + 147011 147050   40                              -6.36
 7.01 Init + 148845 148978  134  2  2   56   56   466 0.407  39.81
 7.02 Intr + 188215 188518  304  1  1  107   70   496 0.572  46.29
 7.03 Term + 201566 201667  102  1  0   90   37    80 0.092   1.38
 7.04 PlyA + 203555 203560    6                               1.05


Suboptimal exons with probability > 0.800

Exnum Type S .Begin ...End .Len Fr Ph B/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------



Predicted peptide sequence(s):

Predicted coding sequence(s):


>gi568815576r:28695549_28900524|GENSCAN_predicted_peptide_1|365_aa
MSRESDVEAQQSHGSSACSQPHGSVTQSQGSSSQSQGISSSSTSTMPNSSQSSHSSSGTL
SSLETVSTQELYSIPEDQEPEDQEPEEPTPAPWARLWALQDGFANLECVNDNYWFGRDKS
CEYCFDEPLLKRTDKYRTYSKKHFRIFREVGPKNSYIAYIEDHSGNGTFVNTELVGKGKR
RPLNNNSEIALSLSRNKVFVFFDLTVDDQSVYPKALRDEYIMSKTLGSGACGEVKLAFER
KTCKKVAIKIISKRKFAIGSAREADPALNVETEIEILKKLNHPCIIKIKNFFDAEDYYIV
LELMEGGELFDKVVGNKRLKEATCKLYFYQMLLAVQYLHENGIIHRDLKPENVLLSSQEE
DCLIK

>gi568815576r:28695549_28900524|GENSCAN_predicted_CDS_1|1095_bp
atgtctcgggagtcggatgttgaggctcagcagtctcatggcagcagtgcctgttcacag
ccccatggcagcgttacccagtcccaaggctcctcctcacagtcccagggcatatccagc
tcctctaccagcacgatgccaaactccagccagtcctctcactccagctctgggacactg
agctccttagagacagtgtccactcaggaactctattctattcctgaggaccaagaacct
gaggaccaagaacctgaggagcctacccctgccccctgggctcgattatgggcccttcag
gatggatttgccaatcttgaatgtgtgaatgacaactactggtttgggagggacaaaagc
tgtgaatattgctttgatgaaccactgctgaaaagaacagataaataccgaacatacagc
aagaaacactttcggattttcagggaagtgggtcctaaaaactcttacattgcatacata
gaagatcacagtggcaatggaacctttgtaaatacagagcttgtagggaaaggaaaacgc
cgtcctttgaataacaattctgaaattgcactgtcactaagcagaaataaagtttttgtc
ttttttgatctgactgtagatgatcagtcagtttatcctaaggcattaagagatgaatac
atcatgtcaaaaactcttggaagtggtgcctgtggagaggtaaagctggctttcgagagg
aaaacatgtaagaaagtagccataaagatcatcagcaaaaggaagtttgctattggttca
gcaagagaggcagacccagctctcaatgttgaaacagaaatagaaattttgaaaaagcta
aatcatccttgcatcatcaagattaaaaacttttttgatgcagaagattattatattgtt
ttggaattgatggaagggggagagctgtttgacaaagtggtggggaataaacgcctgaaa
gaagctacctgcaagctctatttttaccagatgctcttggctgtgcagtaccttcatgaa
aacggtattatacaccgtgacttaaagccagagaatgttttactgtcatctcaagaagag
gactgtcttataaag

>gi568815576r:28695549_28900524|GENSCAN_predicted_peptide_2|219_aa
MWRGRAGALLRVWGFWPTGVPRRRPLSCDAASQAGSNYPRCWNCGGPWGPGREDRFFCPQ
CRALQAPDPTRDYFSLMDCNRSFRVDTAKLQHRYQQLQRLVHPDFFSQRSQTEKDFSEKH
STLVNDAYKTLLAPLSRGLYLLKLHGIEIPERTDYEMDRQFLIEIMEINEKLAEAESEAA
MKEIESIVKDDFEEAKEILTKMRYFSNIEEKIKLKKIPL

>gi568815576r:28695549_28900524|GENSCAN_predicted_CDS_2|660_bp
atgtggcgggggagagccggggctttgctccgggtgtgggggttttggccgacaggggtt
cccagaaggagaccgctaagctgcgatgctgcgtcgcaggcgggaagcaattatccccgc
tgttggaactgcggcggcccatggggccccgggcgggaggacaggttcttctgcccacag
tgccgagcgctgcaggcacctgaccccactcgagactacttcagccttatggactgcaac
cgttccttcagagttgatacagcgaagctccagcacaggtaccagcaactgcagcgtctt
gtccacccagatttcttcagccagaggtctcagactgaaaaggacttctcagagaagcat
tcgaccctggtgaatgatgcctataagaccctcctggcccccctgagcagaggactgtac
cttctaaagctccatggaatagagattcctgaaaggacagattatgaaatggacaggcaa
ttcctcatagaaataatggaaatcaatgaaaaactcgcagaagctgaaagtgaagctgcc
atgaaagagattgaatccattgtcaaagatgactttgaagaagccaaggaaattttgaca
aagatgagatacttttcaaatatagaagaaaagatcaagttaaagaagattcccctttaa

>gi568815576r:28695549_28900524|GENSCAN_predicted_peptide_3|211_aa
MAALGRPFSGLPLSGGSDFLQPPQPAFPGRAFPPGADGAELAPRPGPRAVPSSPAGSAAR
GRVSVHCKKKHKREEEEDDDCPVRKKRITEAELCAGPNDWILCAHQDVEGHGVNPSVSGL
SIPGILDVICEEMDQTTGEPQCEVARRKLQEIEDRIIDEDEEVEADRNVNHLPSLVLSDT
MKTGLKREFDEVFTKKMIESMQLEIGFFLVH

>gi568815576r:28695549_28900524|GENSCAN_predicted_CDS_3|636_bp
atggctgcgctcggccggcccttcagcggcctccctctgagcggcggctcggacttcctg
cagccgccgcagccggccttccccggccgggccttcccgccgggggctgacggcgccgag
ttggccccgcggccgggacctcgcgcagtccctagcagtcccgctgggagtgcggcgcgc
ggacgtgtttctgttcactgtaaaaagaaacacaagcgagaggaggaggaggatgatgat
tgtccagtaagaaagaaaaggataactgaagcagagctctgtgctggtcctaatgactgg
attctttgtgcacatcaggatgtagaggggcatggagtaaatcccagtgttagtggcctt
tccatacctgggatattagatgttatttgtgaagaaatggatcagacaactggagaacca
cagtgtgaagttgcccgaaggaagcttcaggagattgaggacaggataattgatgaagat
gaagaagttgaagctgacagaaatgttaaccatctccccagtcttgtcctttctgatacc
atgaaaacaggtttgaagagggaatttgatgaagtttttacaaagaaaatgattgagtct
atgcaattggagattggctttttcctagttcattag

>gi568815576r:28695549_28900524|GENSCAN_predicted_peptide_4|336_aa
MVVVAAAPNPADGTPKVLLLSGQPASAAGAPAGQALPLMVPAQRGASPEAASGGLPQARK
RQRLTHLSPEEKALRRKLKNRVAAQTARDRKKARMSELEQQVVDLEEENQKLLLENQLLR
EKTHGLVVENQELRQRLGMDALVAEEEAEAKSDILLGILDNLDPVMFFKCPSPEPASLEE
LPEVYPEGPSSLPASLSLSVGTSSAKLEAINELIRFDHIYTKPLVLEIPSETESQANVVV
KIEEAPLSPSENDHPEFIVSVKEEPVEDDLVPELGISNLLSSSHCPKPSSCLLDAYSDCG
YGGSLSPFSDMSSLLGVNHSWEDTFANELFPQLISV

>gi568815576r:28695549_28900524|GENSCAN_predicted_CDS_4|1011_bp
atggtggtggtggcagccgcgccgaacccggccgacgggacccctaaagttctgcttctg
tcggggcagcccgcctccgccgccggagccccggccggccaggccctgccgctcatggtg
ccagcccagagaggggccagcccggaggcagcgagcggggggctgccccaggcgcgcaag
cgacagcgcctcacgcacctgagccccgaggagaaggcgctgaggaggaaactgaaaaac
agagtagcagctcagactgccagagatcgaaagaaggctcgaatgagtgagctggaacag
caagtggtagatttagaagaagagaaccaaaaacttttgctagaaaatcagcttttacga
gagaaaactcatggccttgtagttgagaaccaggagttaagacagcgcttggggatggat
gccctggttgctgaagaggaggcggaagccaagtctgatatcctgttgggcattctggac
aacttggacccagtcatgttcttcaaatgcccttccccagagcctgccagcctggaggag
ctcccagaggtctacccagaaggacccagttccttaccagcctccctttctctgtcagtg
gggacgtcatcagccaagctggaagccattaatgaactaattcgttttgaccacatatat
accaagcccctagtcttagagataccctctgagacagagagccaagctaatgtggtagtg
aaaatcgaggaagcacctctcagcccctcagagaatgatcaccctgaattcattgtctca
gtgaaggaagaacctgtagaagatgacctcgttccggagctgggtatctcaaatctgctt
tcatccagccactgcccaaagccatcttcctgcctactggatgcttacagtgactgtgga
tacgggggttccctttccccattcagtgacatgtcctctctgcttggtgtaaaccattct
tgggaggacacttttgccaatgaactctttccccagctgattagtgtctaa

>gi568815576r:28695549_28900524|GENSCAN_predicted_peptide_5|107_aa
MDPFLTPYAKINSRWIKDLNVRPKTIKTLEENLGNTIQDIGMGKDFMSKTPKAMATKAKI
DKWDLIKLKSFCTAKETIIRVNRQPTEWEKIFTIYPSEKGLVSRIYK

>gi568815576r:28695549_28900524|GENSCAN_predicted_CDS_5|324_bp
atggatcccttccttacaccttatgcaaaaattaattctagatggattaaagacttaaat
gttagacctaaaaccataaaaaccctagaagaaaacctaggcaataccattcaggacata
ggcatgggcaaggacttcatgtctaaaacaccaaaagcaatggcaacaaaagccaaaatt
gacaaatgggatctaattaaactaaagagcttctgcacagcaaaagaaacgatcatcaga
gtgaacaggcaacctacagaatgggagaaaatttttacaatctacccatctgaaaaaggg
ctagtatccagaatctacaaataa

>gi568815576r:28695549_28900524|GENSCAN_predicted_peptide_6|125_aa
MPSVIGFSTGPAKELCEGDTLDRAYFLALGTDPWSSDAHLKSGLSCPHGMRNVSRQKGLD
LWGLLPFIPFILGEGPCQPPRNGFLHLAWENGKQLHLTLSLQLMILDEVKPPVSQFPYIK
PQRSL

>gi568815576r:28695549_28900524|GENSCAN_predicted_CDS_6|378_bp
atgcccagtgtcattggcttttctacaggacctgccaaagagctgtgtgaaggagatacc
ttagaccgagcatacttcctggccctgggcacagatccttggtcctcagacgcgcacttg
aagtccggcctcagctgcccacatgggatgaggaatgtgtcccgtcagaaaggtctagat
ctctgggggctactgccatttatcccttttattctgggagaaggtccatgtcagccacca
cgaaatggcttcctccacctggcctgggaaaatggcaagcagctccaccttacactgtcc
ttacagcttatgatcttagacgaagtgaagccccctgtttcccagtttccttatatcaag
cctcagagaagtctttga

>gi568815576r:28695549_28900524|GENSCAN_predicted_peptide_7|179_aa
MKKKKEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEQAMTMRPRSGGRPGATGR
RRRRLRRRPRGLRCSRLPPPPPLPLLLGLLLAAAGPGAARAKETAFVEVVLFESSPSGDY
TTYTTGLTGRFSRAGATLSAEGEIVQIHPSKVVFGHISLLIKIFRGVLLLTTELCEEVT

>gi568815576r:28695549_28900524|GENSCAN_predicted_CDS_7|540_bp
atgaagaagaagaaagaagaagaagaagaagaagaagaagaagaggaagaggaagaggaa
gaagaagaagaagaagaagaagaagaagaagaagaagaagaagaagaagaagaagaagaa
gaagaacaggccatgaccatgaggccgcgctcgggcgggcgcccaggggccacgggccgc
cgccgccgccgcctgcgccgccgcccccgcggcctccggtgcagccgcctgccgccgccg
ccgccgctgccgctgctgctcgggctgctgctggcggccgcggggcccggcgcggcgcgg
gccaaggagacggcgttcgtggaggtggtgctgttcgagtcgagcccaagcggcgattac
accacctacaccaccggcctcacgggccgcttctcgcgggccggggccacgctcagcgcc
gagggcgagatcgtgcagattcatccttctaaagtagtgtttggtcacatcagtctcttg
atcaaaatctttcgtggcgtcctgttgcttactactgagctgtgtgaagaggtgacctag