Result of FASTA (omim) for pF1KB9548
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB9548, 127 aa
  1>>>pF1KB9548 127 - 127 aa - 127 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.9854+/-0.000295; mu= 7.7370+/- 0.019
 mean_var=84.4987+/-16.862, 0's: 0 Z-trim(118.8): 7  B-trim: 869 in 1/52
 Lambda= 0.139524
 statistics sampled from 32030 (32036) to 32030 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.76), E-opt: 0.2 (0.376), width:  16
 Scan time:  4.960

The best scores are:                                      opt bits E(85289)
NP_068809 (OMIM: 604414) DNA-directed RNA polymera ( 127)  842 178.3 2.9e-45
NP_001288060 (OMIM: 604414) DNA-directed RNA polym ( 105)  654 140.4 6.1e-34
NP_001288059 (OMIM: 604414) DNA-directed RNA polym ( 158)  650 139.7 1.5e-33
XP_016884321 (OMIM: 604414) PREDICTED: DNA-directe ( 111)  638 137.2 5.9e-33
NP_001288058 (OMIM: 604414) DNA-directed RNA polym ( 118)  637 137.0 7.2e-33


>>NP_068809 (OMIM: 604414) DNA-directed RNA polymerases   (127 aa)
 initn: 842 init1: 842 opt: 842  Z-score: 933.7  bits: 178.3 E(85289): 2.9e-45
Smith-Waterman score: 842; 100.0% identity (100.0% similar) in 127 aa overlap (1-127:1-127)

               10        20        30        40        50        60
pF1KB9 MSDNEDNFDGDDFDDVEEDEGLDDLENAEEEGQENVEILPSGERPQANQKRITTPYMTKY
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_068 MSDNEDNFDGDDFDDVEEDEGLDDLENAEEEGQENVEILPSGERPQANQKRITTPYMTKY
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB9 ERARVLGTRALQIAMCAPVMVELEGETDPLLIAMKELKARKIPIIIRRYLPDGSYEDWGV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_068 ERARVLGTRALQIAMCAPVMVELEGETDPLLIAMKELKARKIPIIIRRYLPDGSYEDWGV
               70        80        90       100       110       120

              
pF1KB9 DELIITD
       :::::::
NP_068 DELIITD
              

>>NP_001288060 (OMIM: 604414) DNA-directed RNA polymeras  (105 aa)
 initn: 739 init1: 654 opt: 654  Z-score: 730.4  bits: 140.4 E(85289): 6.1e-34
Smith-Waterman score: 654; 97.1% identity (99.0% similar) in 102 aa overlap (1-102:1-102)

               10        20        30        40        50        60
pF1KB9 MSDNEDNFDGDDFDDVEEDEGLDDLENAEEEGQENVEILPSGERPQANQKRITTPYMTKY
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MSDNEDNFDGDDFDDVEEDEGLDDLENAEEEGQENVEILPSGERPQANQKRITTPYMTKY
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB9 ERARVLGTRALQIAMCAPVMVELEGETDPLLIAMKELKARKIPIIIRRYLPDGSYEDWGV
       :::::::::::::::::::::::::::::::::::::: :..                  
NP_001 ERARVLGTRALQIAMCAPVMVELEGETDPLLIAMKELKRRRLREE               
               70        80        90       100                    

              
pF1KB9 DELIITD

>>NP_001288059 (OMIM: 604414) DNA-directed RNA polymeras  (158 aa)
 initn: 650 init1: 650 opt: 650  Z-score: 723.4  bits: 139.7 E(85289): 1.5e-33
Smith-Waterman score: 650; 99.0% identity (100.0% similar) in 100 aa overlap (1-100:1-100)

               10        20        30        40        50        60
pF1KB9 MSDNEDNFDGDDFDDVEEDEGLDDLENAEEEGQENVEILPSGERPQANQKRITTPYMTKY
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MSDNEDNFDGDDFDDVEEDEGLDDLENAEEEGQENVEILPSGERPQANQKRITTPYMTKY
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB9 ERARVLGTRALQIAMCAPVMVELEGETDPLLIAMKELKARKIPIIIRRYLPDGSYEDWGV
       :::::::::::::::::::::::::::::::::::::.::                    
NP_001 ERARVLGTRALQIAMCAPVMVELEGETDPLLIAMKELNARSASEPPGEEPPWMDRGTRDE
               70        80        90       100       110       120

                                             
pF1KB9 DELIITD                               
                                             
NP_001 HLPSCPGCPAVASNTRCCPPAACLPGISLSRRRRLREE
              130       140       150        

>>XP_016884321 (OMIM: 604414) PREDICTED: DNA-directed RN  (111 aa)
 initn: 638 init1: 638 opt: 638  Z-score: 712.6  bits: 137.2 E(85289): 5.9e-33
Smith-Waterman score: 638; 100.0% identity (100.0% similar) in 97 aa overlap (1-97:1-97)

               10        20        30        40        50        60
pF1KB9 MSDNEDNFDGDDFDDVEEDEGLDDLENAEEEGQENVEILPSGERPQANQKRITTPYMTKY
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 MSDNEDNFDGDDFDDVEEDEGLDDLENAEEEGQENVEILPSGERPQANQKRITTPYMTKY
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB9 ERARVLGTRALQIAMCAPVMVELEGETDPLLIAMKELKARKIPIIIRRYLPDGSYEDWGV
       :::::::::::::::::::::::::::::::::::::                       
XP_016 ERARVLGTRALQIAMCAPVMVELEGETDPLLIAMKELNYFQKAFEEAPVQG         
               70        80        90       100       110          

              
pF1KB9 DELIITD

>>NP_001288058 (OMIM: 604414) DNA-directed RNA polymeras  (118 aa)
 initn: 637 init1: 637 opt: 637  Z-score: 711.1  bits: 137.0 E(85289): 7.2e-33
Smith-Waterman score: 637; 99.0% identity (100.0% similar) in 98 aa overlap (30-127:21-118)

               10        20        30        40        50        60
pF1KB9 MSDNEDNFDGDDFDDVEEDEGLDDLENAEEEGQENVEILPSGERPQANQKRITTPYMTKY
                                    .::::::::::::::::::::::::::::::
NP_001          MVSISCLVIRPPRPPKVLGLQEGQENVEILPSGERPQANQKRITTPYMTKY
                        10        20        30        40        50 

               70        80        90       100       110       120
pF1KB9 ERARVLGTRALQIAMCAPVMVELEGETDPLLIAMKELKARKIPIIIRRYLPDGSYEDWGV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 ERARVLGTRALQIAMCAPVMVELEGETDPLLIAMKELKARKIPIIIRRYLPDGSYEDWGV
              60        70        80        90       100       110 

              
pF1KB9 DELIITD
       :::::::
NP_001 DELIITD
              




127 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 17:09:36 2016 done: Fri Nov  4 17:09:37 2016
 Total Scan time:  4.960 Total Display time: -0.010

Function used was FASTA [36.3.4 Apr, 2011]
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