Result of FASTA (omim) for pF1KB9038
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB9038, 444 aa
  1>>>pF1KB9038 444 - 444 aa - 444 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.2551+/-0.000391; mu= 18.1961+/- 0.025
 mean_var=69.7895+/-13.737, 0's: 0 Z-trim(112.6): 63  B-trim: 511 in 2/51
 Lambda= 0.153525
 statistics sampled from 21502 (21570) to 21502 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.62), E-opt: 0.2 (0.253), width:  16
 Scan time:  8.390

The best scores are:                                      opt bits E(85289)
NP_821133 (OMIM: 156610,191130,615771) tubulin bet ( 444) 2987 670.9 1.9e-192
NP_006079 (OMIM: 602660) tubulin beta-4B chain [Ho ( 445) 2929 658.0 1.4e-188
NP_006078 (OMIM: 602662) tubulin beta-4A chain iso ( 444) 2893 650.0 3.5e-186
NP_001276058 (OMIM: 602662) tubulin beta-4A chain  ( 444) 2893 650.0 3.5e-186
NP_001276056 (OMIM: 602662) tubulin beta-4A chain  ( 489) 2893 650.1 3.8e-186
NP_001276052 (OMIM: 602662) tubulin beta-4A chain  ( 495) 2893 650.1 3.8e-186
NP_821080 (OMIM: 610031,612850) tubulin beta-2B ch ( 445) 2885 648.3 1.2e-185
NP_001060 (OMIM: 615101,615763) tubulin beta-2A ch ( 445) 2866 644.1 2.2e-184
NP_001280141 (OMIM: 156610,191130,615771) tubulin  ( 464) 2862 643.2 4.2e-184
NP_006077 (OMIM: 600638,602661,614039) tubulin bet ( 450) 2793 627.9 1.6e-179
NP_001290453 (OMIM: 615103) tubulin beta-6 chain i ( 446) 2741 616.4 4.8e-176
NP_115914 (OMIM: 615103) tubulin beta-6 chain isof ( 446) 2741 616.4 4.8e-176
NP_817124 (OMIM: 616768,616780) tubulin beta-8 cha ( 444) 2738 615.7 7.5e-176
NP_001280143 (OMIM: 156610,191130,615771) tubulin  ( 400) 2599 584.9 1.3e-166
NP_001280144 (OMIM: 156610,191130,615771) tubulin  ( 372) 2492 561.2 1.6e-159
NP_001280145 (OMIM: 156610,191130,615771) tubulin  ( 372) 2492 561.2 1.6e-159
NP_110400 (OMIM: 612901,613112) tubulin beta-1 cha ( 451) 2433 548.2 1.6e-155
NP_001276060 (OMIM: 602662) tubulin beta-4A chain  ( 372) 2418 544.8 1.4e-154
NP_001276059 (OMIM: 602662) tubulin beta-4A chain  ( 372) 2418 544.8 1.4e-154
NP_001184110 (OMIM: 600638,602661,614039) tubulin  ( 378) 2347 529.1 7.8e-150
NP_001290456 (OMIM: 615103) tubulin beta-6 chain i ( 374) 2328 524.9 1.4e-148
XP_011517761 (OMIM: 616768,616780) PREDICTED: tubu ( 372) 2318 522.6 6.6e-148
XP_016883574 (OMIM: 612901,613112) PREDICTED: tubu ( 429) 2279 514.0 2.9e-145
NP_001297244 (OMIM: 615101,615763) tubulin beta-2A ( 360) 2253 508.2 1.4e-143
NP_001290457 (OMIM: 615103) tubulin beta-6 chain i ( 381) 2189 494.1 2.7e-139
NP_001290455 (OMIM: 615103) tubulin beta-6 chain i ( 409) 2180 492.1 1.1e-138
XP_016871681 (OMIM: 616768,616780) PREDICTED: tubu ( 332) 2040 461.0 2.1e-129
XP_016871682 (OMIM: 616768,616780) PREDICTED: tubu ( 332) 2040 461.0 2.1e-129
NP_001290459 (OMIM: 615103) tubulin beta-6 chain i ( 300) 1835 415.6 8.8e-116
NP_001290458 (OMIM: 615103) tubulin beta-6 chain i ( 300) 1835 415.6 8.8e-116
XP_011517762 (OMIM: 616768,616780) PREDICTED: tubu ( 291) 1658 376.4 5.5e-104
NP_005991 (OMIM: 191110,616208) tubulin alpha-4A c ( 448) 1296 296.3 1.1e-79
NP_006073 (OMIM: 602530) tubulin alpha-1B chain [H ( 451) 1288 294.6 3.6e-79
NP_005992 (OMIM: 602528) tubulin alpha-3C/D chain  ( 450) 1281 293.0 1.1e-78
NP_001257328 (OMIM: 602529,611603) tubulin alpha-1 ( 451) 1280 292.8 1.2e-78
NP_006000 (OMIM: 602529,611603) tubulin alpha-1A c ( 451) 1280 292.8 1.2e-78
NP_061816 (OMIM: 605742,613180) tubulin alpha-8 ch ( 449) 1262 288.8   2e-77
NP_001265481 (OMIM: 191110,616208) tubulin alpha-4 ( 433) 1244 284.8   3e-76
NP_001257329 (OMIM: 602529,611603) tubulin alpha-1 ( 416) 1173 269.1 1.6e-71
NP_001180343 (OMIM: 605742,613180) tubulin alpha-8 ( 383) 1092 251.1 3.7e-66
NP_001061 (OMIM: 191135,615412) tubulin gamma-1 ch ( 451) 1007 232.3   2e-60
NP_057521 (OMIM: 605785) tubulin gamma-2 chain iso ( 451)  998 230.3 7.9e-60
NP_001280142 (OMIM: 156610,191130,615771) tubulin  ( 242)  848 196.9 4.8e-50
XP_016860313 (OMIM: 191110,616208) PREDICTED: tubu ( 295)  787 183.5 6.5e-46
NP_001307438 (OMIM: 605785) tubulin gamma-2 chain  ( 460)  619 146.4 1.5e-34
NP_001290454 (OMIM: 615103) tubulin beta-6 chain i ( 104)  555 131.8 8.3e-31
NP_057346 (OMIM: 607345) tubulin epsilon chain [Ho ( 475)  524 125.4 3.3e-28
XP_016879942 (OMIM: 605785) PREDICTED: tubulin gam ( 298)  514 123.0 1.1e-27
XP_011522916 (OMIM: 605785) PREDICTED: tubulin gam ( 298)  514 123.0 1.1e-27
XP_016879944 (OMIM: 605785) PREDICTED: tubulin gam ( 274)  475 114.4 3.9e-25


>>NP_821133 (OMIM: 156610,191130,615771) tubulin beta ch  (444 aa)
 initn: 2987 init1: 2987 opt: 2987  Z-score: 3576.1  bits: 670.9 E(85289): 1.9e-192
Smith-Waterman score: 2987; 100.0% identity (100.0% similar) in 444 aa overlap (1-444:1-444)

               10        20        30        40        50        60
pF1KB9 MREIVHIQAGQCGNQIGAKFWEVISDEHGIDPTGTYHGDSDLQLDRISVYYNEATGGKYV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_821 MREIVHIQAGQCGNQIGAKFWEVISDEHGIDPTGTYHGDSDLQLDRISVYYNEATGGKYV
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB9 PRAILVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_821 PRAILVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVV
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB9 RKEAESCDCLQGFQLTHSLGGGTGSGMGTLLISKIREEYPDRIMNTFSVVPSPKVSDTVV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_821 RKEAESCDCLQGFQLTHSLGGGTGSGMGTLLISKIREEYPDRIMNTFSVVPSPKVSDTVV
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB9 EPYNATLSVHQLVENTDETYCIDNEALYDICFRTLKLTTPTYGDLNHLVSATMSGVTTCL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_821 EPYNATLSVHQLVENTDETYCIDNEALYDICFRTLKLTTPTYGDLNHLVSATMSGVTTCL
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB9 RFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLTSRGSQQYRALTVPELTQQVFDAKNMM
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_821 RFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLTSRGSQQYRALTVPELTQQVFDAKNMM
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KB9 AACDPRHGRYLTVAAVFRGRMSMKEVDEQMLNVQNKNSSYFVEWIPNNVKTAVCDIPPRG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_821 AACDPRHGRYLTVAAVFRGRMSMKEVDEQMLNVQNKNSSYFVEWIPNNVKTAVCDIPPRG
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KB9 LKMAVTFIGNSTAIQELFKRISEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_821 LKMAVTFIGNSTAIQELFKRISEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVS
              370       380       390       400       410       420

              430       440    
pF1KB9 EYQQYQDATAEEEEDFGEEAEEEA
       ::::::::::::::::::::::::
NP_821 EYQQYQDATAEEEEDFGEEAEEEA
              430       440    

>>NP_006079 (OMIM: 602660) tubulin beta-4B chain [Homo s  (445 aa)
 initn: 2929 init1: 2929 opt: 2929  Z-score: 3506.7  bits: 658.0 E(85289): 1.4e-188
Smith-Waterman score: 2929; 97.7% identity (99.5% similar) in 443 aa overlap (1-443:1-443)

               10        20        30        40        50        60
pF1KB9 MREIVHIQAGQCGNQIGAKFWEVISDEHGIDPTGTYHGDSDLQLDRISVYYNEATGGKYV
       ::::::.:::::::::::::::::::::::::::::::::::::.::.::::::::::::
NP_006 MREIVHLQAGQCGNQIGAKFWEVISDEHGIDPTGTYHGDSDLQLERINVYYNEATGGKYV
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB9 PRAILVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVV
       :::.::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_006 PRAVLVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVV
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB9 RKEAESCDCLQGFQLTHSLGGGTGSGMGTLLISKIREEYPDRIMNTFSVVPSPKVSDTVV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_006 RKEAESCDCLQGFQLTHSLGGGTGSGMGTLLISKIREEYPDRIMNTFSVVPSPKVSDTVV
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB9 EPYNATLSVHQLVENTDETYCIDNEALYDICFRTLKLTTPTYGDLNHLVSATMSGVTTCL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_006 EPYNATLSVHQLVENTDETYCIDNEALYDICFRTLKLTTPTYGDLNHLVSATMSGVTTCL
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB9 RFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLTSRGSQQYRALTVPELTQQVFDAKNMM
       ::::::::::::::::::::::::::::::::::::::::::::::::::::.:::::::
NP_006 RFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLTSRGSQQYRALTVPELTQQMFDAKNMM
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KB9 AACDPRHGRYLTVAAVFRGRMSMKEVDEQMLNVQNKNSSYFVEWIPNNVKTAVCDIPPRG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_006 AACDPRHGRYLTVAAVFRGRMSMKEVDEQMLNVQNKNSSYFVEWIPNNVKTAVCDIPPRG
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KB9 LKMAVTFIGNSTAIQELFKRISEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVS
       :::..:::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_006 LKMSATFIGNSTAIQELFKRISEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVS
              370       380       390       400       410       420

              430       440     
pF1KB9 EYQQYQDATAEEEEDFGEEAEEEA 
       ::::::::::::: .: ::::::  
NP_006 EYQQYQDATAEEEGEFEEEAEEEVA
              430       440     

>>NP_006078 (OMIM: 602662) tubulin beta-4A chain isoform  (444 aa)
 initn: 2909 init1: 2872 opt: 2893  Z-score: 3463.6  bits: 650.0 E(85289): 3.5e-186
Smith-Waterman score: 2893; 96.8% identity (99.3% similar) in 443 aa overlap (1-443:1-442)

               10        20        30        40        50        60
pF1KB9 MREIVHIQAGQCGNQIGAKFWEVISDEHGIDPTGTYHGDSDLQLDRISVYYNEATGGKYV
       ::::::.:::::::::::::::::::::::::::::::::::::.::.:::::::::.::
NP_006 MREIVHLQAGQCGNQIGAKFWEVISDEHGIDPTGTYHGDSDLQLERINVYYNEATGGNYV
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB9 PRAILVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVV
       :::.::::::::::::::::::::::::::::::::::::::::::::::::::.:::::
NP_006 PRAVLVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDAVLDVV
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB9 RKEAESCDCLQGFQLTHSLGGGTGSGMGTLLISKIREEYPDRIMNTFSVVPSPKVSDTVV
       ::::::::::::::::::::::::::::::::::::::.:::::::::::::::::::::
NP_006 RKEAESCDCLQGFQLTHSLGGGTGSGMGTLLISKIREEFPDRIMNTFSVVPSPKVSDTVV
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB9 EPYNATLSVHQLVENTDETYCIDNEALYDICFRTLKLTTPTYGDLNHLVSATMSGVTTCL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_006 EPYNATLSVHQLVENTDETYCIDNEALYDICFRTLKLTTPTYGDLNHLVSATMSGVTTCL
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB9 RFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLTSRGSQQYRALTVPELTQQVFDAKNMM
       ::::::::::::::::::::::::::::::::::::::::::::::::::::.:::::::
NP_006 RFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLTSRGSQQYRALTVPELTQQMFDAKNMM
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KB9 AACDPRHGRYLTVAAVFRGRMSMKEVDEQMLNVQNKNSSYFVEWIPNNVKTAVCDIPPRG
       :::::::::::::::::::::::::::::::.::.:::::::::::::::::::::::::
NP_006 AACDPRHGRYLTVAAVFRGRMSMKEVDEQMLSVQSKNSSYFVEWIPNNVKTAVCDIPPRG
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KB9 LKMAVTFIGNSTAIQELFKRISEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVS
       ::::.:::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_006 LKMAATFIGNSTAIQELFKRISEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVS
              370       380       390       400       410       420

              430       440     
pF1KB9 EYQQYQDATAEEEEDFGEEAEEEA 
       :::::::::::: : : ::::::  
NP_006 EYQQYQDATAEEGE-FEEEAEEEVA
              430        440    

>>NP_001276058 (OMIM: 602662) tubulin beta-4A chain isof  (444 aa)
 initn: 2909 init1: 2872 opt: 2893  Z-score: 3463.6  bits: 650.0 E(85289): 3.5e-186
Smith-Waterman score: 2893; 96.8% identity (99.3% similar) in 443 aa overlap (1-443:1-442)

               10        20        30        40        50        60
pF1KB9 MREIVHIQAGQCGNQIGAKFWEVISDEHGIDPTGTYHGDSDLQLDRISVYYNEATGGKYV
       ::::::.:::::::::::::::::::::::::::::::::::::.::.:::::::::.::
NP_001 MREIVHLQAGQCGNQIGAKFWEVISDEHGIDPTGTYHGDSDLQLERINVYYNEATGGNYV
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB9 PRAILVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVV
       :::.::::::::::::::::::::::::::::::::::::::::::::::::::.:::::
NP_001 PRAVLVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDAVLDVV
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB9 RKEAESCDCLQGFQLTHSLGGGTGSGMGTLLISKIREEYPDRIMNTFSVVPSPKVSDTVV
       ::::::::::::::::::::::::::::::::::::::.:::::::::::::::::::::
NP_001 RKEAESCDCLQGFQLTHSLGGGTGSGMGTLLISKIREEFPDRIMNTFSVVPSPKVSDTVV
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB9 EPYNATLSVHQLVENTDETYCIDNEALYDICFRTLKLTTPTYGDLNHLVSATMSGVTTCL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 EPYNATLSVHQLVENTDETYCIDNEALYDICFRTLKLTTPTYGDLNHLVSATMSGVTTCL
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB9 RFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLTSRGSQQYRALTVPELTQQVFDAKNMM
       ::::::::::::::::::::::::::::::::::::::::::::::::::::.:::::::
NP_001 RFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLTSRGSQQYRALTVPELTQQMFDAKNMM
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KB9 AACDPRHGRYLTVAAVFRGRMSMKEVDEQMLNVQNKNSSYFVEWIPNNVKTAVCDIPPRG
       :::::::::::::::::::::::::::::::.::.:::::::::::::::::::::::::
NP_001 AACDPRHGRYLTVAAVFRGRMSMKEVDEQMLSVQSKNSSYFVEWIPNNVKTAVCDIPPRG
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KB9 LKMAVTFIGNSTAIQELFKRISEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVS
       ::::.:::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 LKMAATFIGNSTAIQELFKRISEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVS
              370       380       390       400       410       420

              430       440     
pF1KB9 EYQQYQDATAEEEEDFGEEAEEEA 
       :::::::::::: : : ::::::  
NP_001 EYQQYQDATAEEGE-FEEEAEEEVA
              430        440    

>>NP_001276056 (OMIM: 602662) tubulin beta-4A chain isof  (489 aa)
 initn: 2909 init1: 2872 opt: 2893  Z-score: 3463.0  bits: 650.1 E(85289): 3.8e-186
Smith-Waterman score: 2893; 96.8% identity (99.3% similar) in 443 aa overlap (1-443:46-487)

                                             10        20        30
pF1KB9                               MREIVHIQAGQCGNQIGAKFWEVISDEHGI
                                     ::::::.:::::::::::::::::::::::
NP_001 AVSAASSTLAAAAAPRARATAAASTLSATAMREIVHLQAGQCGNQIGAKFWEVISDEHGI
          20        30        40        50        60        70     

               40        50        60        70        80        90
pF1KB9 DPTGTYHGDSDLQLDRISVYYNEATGGKYVPRAILVDLEPGTMDSVRSGPFGQIFRPDNF
       ::::::::::::::.::.:::::::::.:::::.::::::::::::::::::::::::::
NP_001 DPTGTYHGDSDLQLERINVYYNEATGGNYVPRAVLVDLEPGTMDSVRSGPFGQIFRPDNF
          80        90       100       110       120       130     

              100       110       120       130       140       150
pF1KB9 VFGQSGAGNNWAKGHYTEGAELVDSVLDVVRKEAESCDCLQGFQLTHSLGGGTGSGMGTL
       ::::::::::::::::::::::::.:::::::::::::::::::::::::::::::::::
NP_001 VFGQSGAGNNWAKGHYTEGAELVDAVLDVVRKEAESCDCLQGFQLTHSLGGGTGSGMGTL
         140       150       160       170       180       190     

              160       170       180       190       200       210
pF1KB9 LISKIREEYPDRIMNTFSVVPSPKVSDTVVEPYNATLSVHQLVENTDETYCIDNEALYDI
       ::::::::.:::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 LISKIREEFPDRIMNTFSVVPSPKVSDTVVEPYNATLSVHQLVENTDETYCIDNEALYDI
         200       210       220       230       240       250     

              220       230       240       250       260       270
pF1KB9 CFRTLKLTTPTYGDLNHLVSATMSGVTTCLRFPGQLNADLRKLAVNMVPFPRLHFFMPGF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 CFRTLKLTTPTYGDLNHLVSATMSGVTTCLRFPGQLNADLRKLAVNMVPFPRLHFFMPGF
         260       270       280       290       300       310     

              280       290       300       310       320       330
pF1KB9 APLTSRGSQQYRALTVPELTQQVFDAKNMMAACDPRHGRYLTVAAVFRGRMSMKEVDEQM
       ::::::::::::::::::::::.:::::::::::::::::::::::::::::::::::::
NP_001 APLTSRGSQQYRALTVPELTQQMFDAKNMMAACDPRHGRYLTVAAVFRGRMSMKEVDEQM
         320       330       340       350       360       370     

              340       350       360       370       380       390
pF1KB9 LNVQNKNSSYFVEWIPNNVKTAVCDIPPRGLKMAVTFIGNSTAIQELFKRISEQFTAMFR
       :.::.:::::::::::::::::::::::::::::.:::::::::::::::::::::::::
NP_001 LSVQSKNSSYFVEWIPNNVKTAVCDIPPRGLKMAATFIGNSTAIQELFKRISEQFTAMFR
         380       390       400       410       420       430     

              400       410       420       430       440     
pF1KB9 RKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQDATAEEEEDFGEEAEEEA 
       :::::::::::::::::::::::::::::::::::::::::: : : ::::::  
NP_001 RKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQDATAEEGE-FEEEAEEEVA
         440       450       460       470        480         

>>NP_001276052 (OMIM: 602662) tubulin beta-4A chain isof  (495 aa)
 initn: 2909 init1: 2872 opt: 2893  Z-score: 3462.9  bits: 650.1 E(85289): 3.8e-186
Smith-Waterman score: 2893; 96.8% identity (99.3% similar) in 443 aa overlap (1-443:52-493)

                                             10        20        30
pF1KB9                               MREIVHIQAGQCGNQIGAKFWEVISDEHGI
                                     ::::::.:::::::::::::::::::::::
NP_001 AVSAASSTLAAAAAPRARATAAASTLSATAMREIVHLQAGQCGNQIGAKFWEVISDEHGI
              30        40        50        60        70        80 

               40        50        60        70        80        90
pF1KB9 DPTGTYHGDSDLQLDRISVYYNEATGGKYVPRAILVDLEPGTMDSVRSGPFGQIFRPDNF
       ::::::::::::::.::.:::::::::.:::::.::::::::::::::::::::::::::
NP_001 DPTGTYHGDSDLQLERINVYYNEATGGNYVPRAVLVDLEPGTMDSVRSGPFGQIFRPDNF
              90       100       110       120       130       140 

              100       110       120       130       140       150
pF1KB9 VFGQSGAGNNWAKGHYTEGAELVDSVLDVVRKEAESCDCLQGFQLTHSLGGGTGSGMGTL
       ::::::::::::::::::::::::.:::::::::::::::::::::::::::::::::::
NP_001 VFGQSGAGNNWAKGHYTEGAELVDAVLDVVRKEAESCDCLQGFQLTHSLGGGTGSGMGTL
             150       160       170       180       190       200 

              160       170       180       190       200       210
pF1KB9 LISKIREEYPDRIMNTFSVVPSPKVSDTVVEPYNATLSVHQLVENTDETYCIDNEALYDI
       ::::::::.:::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 LISKIREEFPDRIMNTFSVVPSPKVSDTVVEPYNATLSVHQLVENTDETYCIDNEALYDI
             210       220       230       240       250       260 

              220       230       240       250       260       270
pF1KB9 CFRTLKLTTPTYGDLNHLVSATMSGVTTCLRFPGQLNADLRKLAVNMVPFPRLHFFMPGF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 CFRTLKLTTPTYGDLNHLVSATMSGVTTCLRFPGQLNADLRKLAVNMVPFPRLHFFMPGF
             270       280       290       300       310       320 

              280       290       300       310       320       330
pF1KB9 APLTSRGSQQYRALTVPELTQQVFDAKNMMAACDPRHGRYLTVAAVFRGRMSMKEVDEQM
       ::::::::::::::::::::::.:::::::::::::::::::::::::::::::::::::
NP_001 APLTSRGSQQYRALTVPELTQQMFDAKNMMAACDPRHGRYLTVAAVFRGRMSMKEVDEQM
             330       340       350       360       370       380 

              340       350       360       370       380       390
pF1KB9 LNVQNKNSSYFVEWIPNNVKTAVCDIPPRGLKMAVTFIGNSTAIQELFKRISEQFTAMFR
       :.::.:::::::::::::::::::::::::::::.:::::::::::::::::::::::::
NP_001 LSVQSKNSSYFVEWIPNNVKTAVCDIPPRGLKMAATFIGNSTAIQELFKRISEQFTAMFR
             390       400       410       420       430       440 

              400       410       420       430       440     
pF1KB9 RKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQDATAEEEEDFGEEAEEEA 
       :::::::::::::::::::::::::::::::::::::::::: : : ::::::  
NP_001 RKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQDATAEEGE-FEEEAEEEVA
             450       460       470       480        490     

>>NP_821080 (OMIM: 610031,612850) tubulin beta-2B chain   (445 aa)
 initn: 2882 init1: 2882 opt: 2885  Z-score: 3454.0  bits: 648.3 E(85289): 1.2e-185
Smith-Waterman score: 2885; 95.7% identity (99.3% similar) in 445 aa overlap (1-444:1-445)

               10        20        30        40        50        60
pF1KB9 MREIVHIQAGQCGNQIGAKFWEVISDEHGIDPTGTYHGDSDLQLDRISVYYNEATGGKYV
       ::::::::::::::::::::::::::::::::::.:::::::::.::.::::::::.:::
NP_821 MREIVHIQAGQCGNQIGAKFWEVISDEHGIDPTGSYHGDSDLQLERINVYYNEATGNKYV
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB9 PRAILVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_821 PRAILVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVV
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB9 RKEAESCDCLQGFQLTHSLGGGTGSGMGTLLISKIREEYPDRIMNTFSVVPSPKVSDTVV
       :::.:::::::::::::::::::::::::::::::::::::::::::::.::::::::::
NP_821 RKESESCDCLQGFQLTHSLGGGTGSGMGTLLISKIREEYPDRIMNTFSVMPSPKVSDTVV
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB9 EPYNATLSVHQLVENTDETYCIDNEALYDICFRTLKLTTPTYGDLNHLVSATMSGVTTCL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_821 EPYNATLSVHQLVENTDETYCIDNEALYDICFRTLKLTTPTYGDLNHLVSATMSGVTTCL
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB9 RFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLTSRGSQQYRALTVPELTQQVFDAKNMM
       ::::::::::::::::::::::::::::::::::::::::::::::::::::.::.::::
NP_821 RFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLTSRGSQQYRALTVPELTQQMFDSKNMM
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KB9 AACDPRHGRYLTVAAVFRGRMSMKEVDEQMLNVQNKNSSYFVEWIPNNVKTAVCDIPPRG
       :::::::::::::::.::::::::::::::::::::::::::::::::::::::::::::
NP_821 AACDPRHGRYLTVAAIFRGRMSMKEVDEQMLNVQNKNSSYFVEWIPNNVKTAVCDIPPRG
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KB9 LKMAVTFIGNSTAIQELFKRISEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVS
       :::..:::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_821 LKMSATFIGNSTAIQELFKRISEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVS
              370       380       390       400       410       420

              430        440    
pF1KB9 EYQQYQDATAEEEEDFGEE-AEEEA
       ::::::::::.:. .: :: .:.::
NP_821 EYQQYQDATADEQGEFEEEEGEDEA
              430       440     

>>NP_001060 (OMIM: 615101,615763) tubulin beta-2A chain   (445 aa)
 initn: 2863 init1: 2863 opt: 2866  Z-score: 3431.3  bits: 644.1 E(85289): 2.2e-184
Smith-Waterman score: 2866; 95.3% identity (99.1% similar) in 445 aa overlap (1-444:1-445)

               10        20        30        40        50        60
pF1KB9 MREIVHIQAGQCGNQIGAKFWEVISDEHGIDPTGTYHGDSDLQLDRISVYYNEATGGKYV
       ::::::::::::::::::::::::::::::::::.:::::::::.::.::::::.:.:::
NP_001 MREIVHIQAGQCGNQIGAKFWEVISDEHGIDPTGSYHGDSDLQLERINVYYNEAAGNKYV
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB9 PRAILVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 PRAILVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVV
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB9 RKEAESCDCLQGFQLTHSLGGGTGSGMGTLLISKIREEYPDRIMNTFSVVPSPKVSDTVV
       :::.:::::::::::::::::::::::::::::::::::::::::::::.::::::::::
NP_001 RKESESCDCLQGFQLTHSLGGGTGSGMGTLLISKIREEYPDRIMNTFSVMPSPKVSDTVV
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB9 EPYNATLSVHQLVENTDETYCIDNEALYDICFRTLKLTTPTYGDLNHLVSATMSGVTTCL
       :::::::::::::::::::: :::::::::::::::::::::::::::::::::::::::
NP_001 EPYNATLSVHQLVENTDETYSIDNEALYDICFRTLKLTTPTYGDLNHLVSATMSGVTTCL
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB9 RFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLTSRGSQQYRALTVPELTQQVFDAKNMM
       ::::::::::::::::::::::::::::::::::::::::::::::::::::.::.::::
NP_001 RFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLTSRGSQQYRALTVPELTQQMFDSKNMM
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KB9 AACDPRHGRYLTVAAVFRGRMSMKEVDEQMLNVQNKNSSYFVEWIPNNVKTAVCDIPPRG
       :::::::::::::::.::::::::::::::::::::::::::::::::::::::::::::
NP_001 AACDPRHGRYLTVAAIFRGRMSMKEVDEQMLNVQNKNSSYFVEWIPNNVKTAVCDIPPRG
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KB9 LKMAVTFIGNSTAIQELFKRISEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVS
       :::..:::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 LKMSATFIGNSTAIQELFKRISEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVS
              370       380       390       400       410       420

              430        440    
pF1KB9 EYQQYQDATAEEEEDFGEE-AEEEA
       ::::::::::.:. .: :: .:.::
NP_001 EYQQYQDATADEQGEFEEEEGEDEA
              430       440     

>>NP_001280141 (OMIM: 156610,191130,615771) tubulin beta  (464 aa)
 initn: 2862 init1: 2862 opt: 2862  Z-score: 3426.2  bits: 643.2 E(85289): 4.2e-184
Smith-Waterman score: 2862; 100.0% identity (100.0% similar) in 426 aa overlap (19-444:39-464)

                           10        20        30        40        
pF1KB9             MREIVHIQAGQCGNQIGAKFWEVISDEHGIDPTGTYHGDSDLQLDRIS
                                     ::::::::::::::::::::::::::::::
NP_001 ANWDPSRSGVRDHPGQQSETLPHATFLQKIKFWEVISDEHGIDPTGTYHGDSDLQLDRIS
       10        20        30        40        50        60        

       50        60        70        80        90       100        
pF1KB9 VYYNEATGGKYVPRAILVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 VYYNEATGGKYVPRAILVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTE
       70        80        90       100       110       120        

      110       120       130       140       150       160        
pF1KB9 GAELVDSVLDVVRKEAESCDCLQGFQLTHSLGGGTGSGMGTLLISKIREEYPDRIMNTFS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 GAELVDSVLDVVRKEAESCDCLQGFQLTHSLGGGTGSGMGTLLISKIREEYPDRIMNTFS
      130       140       150       160       170       180        

      170       180       190       200       210       220        
pF1KB9 VVPSPKVSDTVVEPYNATLSVHQLVENTDETYCIDNEALYDICFRTLKLTTPTYGDLNHL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 VVPSPKVSDTVVEPYNATLSVHQLVENTDETYCIDNEALYDICFRTLKLTTPTYGDLNHL
      190       200       210       220       230       240        

      230       240       250       260       270       280        
pF1KB9 VSATMSGVTTCLRFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLTSRGSQQYRALTVPE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 VSATMSGVTTCLRFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLTSRGSQQYRALTVPE
      250       260       270       280       290       300        

      290       300       310       320       330       340        
pF1KB9 LTQQVFDAKNMMAACDPRHGRYLTVAAVFRGRMSMKEVDEQMLNVQNKNSSYFVEWIPNN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 LTQQVFDAKNMMAACDPRHGRYLTVAAVFRGRMSMKEVDEQMLNVQNKNSSYFVEWIPNN
      310       320       330       340       350       360        

      350       360       370       380       390       400        
pF1KB9 VKTAVCDIPPRGLKMAVTFIGNSTAIQELFKRISEQFTAMFRRKAFLHWYTGEGMDEMEF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 VKTAVCDIPPRGLKMAVTFIGNSTAIQELFKRISEQFTAMFRRKAFLHWYTGEGMDEMEF
      370       380       390       400       410       420        

      410       420       430       440    
pF1KB9 TEAESNMNDLVSEYQQYQDATAEEEEDFGEEAEEEA
       ::::::::::::::::::::::::::::::::::::
NP_001 TEAESNMNDLVSEYQQYQDATAEEEEDFGEEAEEEA
      430       440       450       460    

>>NP_006077 (OMIM: 600638,602661,614039) tubulin beta-3   (450 aa)
 initn: 2793 init1: 2793 opt: 2793  Z-score: 3343.8  bits: 627.9 E(85289): 1.6e-179
Smith-Waterman score: 2793; 92.6% identity (97.7% similar) in 444 aa overlap (1-444:1-444)

               10        20        30        40        50        60
pF1KB9 MREIVHIQAGQCGNQIGAKFWEVISDEHGIDPTGTYHGDSDLQLDRISVYYNEATGGKYV
       ::::::::::::::::::::::::::::::::.:.: :::::::.:::::::::.. :::
NP_006 MREIVHIQAGQCGNQIGAKFWEVISDEHGIDPSGNYVGDSDLQLERISVYYNEASSHKYV
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB9 PRAILVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVV
       ::::::::::::::::::: ::..::::::.:::::::::::::::::::::::::::::
NP_006 PRAILVDLEPGTMDSVRSGAFGHLFRPDNFIFGQSGAGNNWAKGHYTEGAELVDSVLDVV
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB9 RKEAESCDCLQGFQLTHSLGGGTGSGMGTLLISKIREEYPDRIMNTFSVVPSPKVSDTVV
       ::: :.::::::::::::::::::::::::::::.:::::::::::::::::::::::::
NP_006 RKECENCDCLQGFQLTHSLGGGTGSGMGTLLISKVREEYPDRIMNTFSVVPSPKVSDTVV
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB9 EPYNATLSVHQLVENTDETYCIDNEALYDICFRTLKLTTPTYGDLNHLVSATMSGVTTCL
       ::::::::.::::::::::::::::::::::::::::.:::::::::::::::::::: :
NP_006 EPYNATLSIHQLVENTDETYCIDNEALYDICFRTLKLATPTYGDLNHLVSATMSGVTTSL
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB9 RFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLTSRGSQQYRALTVPELTQQVFDAKNMM
       ::::::::::::::::::::::::::::::::::.:::::::::::::::::.:::::::
NP_006 RFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLTARGSQQYRALTVPELTQQMFDAKNMM
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KB9 AACDPRHGRYLTVAAVFRGRMSMKEVDEQMLNVQNKNSSYFVEWIPNNVKTAVCDIPPRG
       ::::::::::::::.:::::::::::::::: .:.:::::::::::::::.:::::::::
NP_006 AACDPRHGRYLTVATVFRGRMSMKEVDEQMLAIQSKNSSYFVEWIPNNVKVAVCDIPPRG
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KB9 LKMAVTFIGNSTAIQELFKRISEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVS
       :::. :::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_006 LKMSSTFIGNSTAIQELFKRISEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVS
              370       380       390       400       410       420

              430       440          
pF1KB9 EYQQYQDATAEEEEDFGEEAEEEA      
       ::::::::::::: .. :. :::.      
NP_006 EYQQYQDATAEEEGEMYEDDEEESEAQGPK
              430       440       450




444 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 16:59:11 2016 done: Fri Nov  4 16:59:12 2016
 Total Scan time:  8.390 Total Display time:  0.110

Function used was FASTA [36.3.4 Apr, 2011]
Inquiries or Suggestions ?
Send a message to flexiclone AT kazusagt.com