Result of FASTA (omim) for pF1KB8999
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB8999, 357 aa
  1>>>pF1KB8999 357 - 357 aa - 357 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 4.4946+/-0.000403; mu= 21.3447+/- 0.025
 mean_var=100.1885+/-26.396, 0's: 0 Z-trim(111.0): 449  B-trim: 1212 in 1/51
 Lambda= 0.128134
 statistics sampled from 18843 (19430) to 18843 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.585), E-opt: 0.2 (0.228), width:  16
 Scan time:  7.930

The best scores are:                                      opt bits E(85289)
NP_076917 (OMIM: 601305) 5-hydroxytryptamine recep ( 357) 2392 453.3 3.9e-127
NP_062874 (OMIM: 182137) 5-hydroxytryptamine recep ( 432)  709 142.3 1.9e-33
NP_000863 (OMIM: 182137) 5-hydroxytryptamine recep ( 445)  709 142.3   2e-33
NP_062873 (OMIM: 182137) 5-hydroxytryptamine recep ( 479)  709 142.3 2.1e-33
NP_150645 (OMIM: 104221) alpha-1A adrenergic recep ( 429)  675 136.0 1.5e-31
XP_006716356 (OMIM: 104221) PREDICTED: alpha-1A ad ( 429)  675 136.0 1.5e-31
NP_150647 (OMIM: 104221) alpha-1A adrenergic recep ( 455)  675 136.0 1.6e-31
NP_000671 (OMIM: 104221) alpha-1A adrenergic recep ( 466)  675 136.0 1.6e-31
XP_006716355 (OMIM: 104221) PREDICTED: alpha-1A ad ( 475)  675 136.1 1.6e-31
XP_016868583 (OMIM: 104221) PREDICTED: alpha-1A ad ( 475)  675 136.1 1.6e-31
NP_150646 (OMIM: 104221) alpha-1A adrenergic recep ( 475)  675 136.1 1.6e-31
XP_016868584 (OMIM: 104221) PREDICTED: alpha-1A ad ( 475)  675 136.1 1.6e-31
NP_000670 (OMIM: 104220) alpha-1B adrenergic recep ( 520)  652 131.9 3.2e-30
NP_001309432 (OMIM: 104221) alpha-1A adrenergic re ( 370)  597 121.5   3e-27
XP_011542714 (OMIM: 104221) PREDICTED: alpha-1A ad ( 308)  585 119.1 1.3e-26
XP_016868585 (OMIM: 104221) PREDICTED: alpha-1A ad ( 317)  585 119.2 1.3e-26
XP_011542713 (OMIM: 104221) PREDICTED: alpha-1A ad ( 324)  585 119.2 1.3e-26
NP_001309433 (OMIM: 104221) alpha-1A adrenergic re ( 342)  585 119.2 1.4e-26
NP_001309431 (OMIM: 104221) alpha-1A adrenergic re ( 372)  585 119.3 1.4e-26
NP_000862 (OMIM: 601109) 5-hydroxytryptamine recep ( 440)  565 115.7   2e-25
XP_011532740 (OMIM: 104220) PREDICTED: alpha-1B ad ( 389)  561 114.9 3.2e-25
XP_011532739 (OMIM: 104220) PREDICTED: alpha-1B ad ( 402)  561 114.9 3.2e-25
XP_011532737 (OMIM: 104220) PREDICTED: alpha-1B ad ( 556)  561 115.1 3.9e-25
XP_005265876 (OMIM: 104220) PREDICTED: alpha-1B ad ( 328)  558 114.2 4.2e-25
XP_006714884 (OMIM: 104220) PREDICTED: alpha-1B ad ( 331)  554 113.5   7e-25
XP_005265875 (OMIM: 104220) PREDICTED: alpha-1B ad ( 366)  554 113.5 7.5e-25
NP_000669 (OMIM: 104219) alpha-1D adrenergic recep ( 572)  544 111.9 3.5e-24
NP_000854 (OMIM: 182131) 5-hydroxytryptamine recep ( 390)  527 108.6 2.5e-23
NP_000612 (OMIM: 103780,164230,181500,182135,60678 ( 471)  523 107.9 4.6e-23
NP_000515 (OMIM: 109760,614674) 5-hydroxytryptamin ( 422)  520 107.3 6.3e-23
NP_000855 (OMIM: 182133) 5-hydroxytryptamine recep ( 377)  502 103.9 5.9e-22
NP_001309138 (OMIM: 182134) 5-hydroxytryptamine re ( 366)  477 99.3 1.4e-20
NP_001309139 (OMIM: 182134) 5-hydroxytryptamine re ( 366)  477 99.3 1.4e-20
XP_011531966 (OMIM: 182134) PREDICTED: 5-hydroxytr ( 366)  477 99.3 1.4e-20
NP_001309137 (OMIM: 182134) 5-hydroxytryptamine re ( 366)  477 99.3 1.4e-20
NP_000857 (OMIM: 182134) 5-hydroxytryptamine recep ( 366)  477 99.3 1.4e-20
XP_005264808 (OMIM: 182134) PREDICTED: 5-hydroxytr ( 366)  477 99.3 1.4e-20
XP_011534091 (OMIM: 182132) PREDICTED: 5-hydroxytr ( 365)  474 98.7 2.1e-20
NP_000856 (OMIM: 182132) 5-hydroxytryptamine recep ( 365)  474 98.7 2.1e-20
NP_000674 (OMIM: 104250) alpha-2C adrenergic recep ( 462)  456 95.6 2.4e-19
NP_000673 (OMIM: 104260,607876) alpha-2B adrenergi ( 450)  450 94.4 5.2e-19
NP_001035262 (OMIM: 602164) 5-hydroxytryptamine re ( 360)  446 93.5 7.6e-19
NP_955525 (OMIM: 602164) 5-hydroxytryptamine recep ( 378)  446 93.6 7.8e-19
NP_001035259 (OMIM: 602164) 5-hydroxytryptamine re ( 387)  446 93.6 7.9e-19
NP_000861 (OMIM: 602164) 5-hydroxytryptamine recep ( 388)  446 93.6 7.9e-19
NP_001273339 (OMIM: 602164) 5-hydroxytryptamine re ( 411)  446 93.6 8.2e-19
NP_001035263 (OMIM: 602164) 5-hydroxytryptamine re ( 428)  446 93.7 8.4e-19
NP_000785 (OMIM: 126449) D(1A) dopamine receptor [ ( 446)  446 93.7 8.6e-19
NP_000672 (OMIM: 104210) alpha-2A adrenergic recep ( 465)  443 93.2 1.3e-18
NP_001159419 (OMIM: 103780,164230,181500,182135,60 ( 387)  423 89.3 1.5e-17


>>NP_076917 (OMIM: 601305) 5-hydroxytryptamine receptor   (357 aa)
 initn: 2392 init1: 2392 opt: 2392  Z-score: 2403.6  bits: 453.3 E(85289): 3.9e-127
Smith-Waterman score: 2392; 100.0% identity (100.0% similar) in 357 aa overlap (1-357:1-357)

               10        20        30        40        50        60
pF1KB8 MDLPVNLTSFSLSTPSPLETNHSLGKDDLRPSSPLLSVFGVLILTLLGFLVAATFAWNLL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_076 MDLPVNLTSFSLSTPSPLETNHSLGKDDLRPSSPLLSVFGVLILTLLGFLVAATFAWNLL
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB8 VLATILRVRTFHRVPHNLVASMAVSDVLVAALVMPLSLVHELSGRRWQLGRRLCQLWIAC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_076 VLATILRVRTFHRVPHNLVASMAVSDVLVAALVMPLSLVHELSGRRWQLGRRLCQLWIAC
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB8 DVLCCTASIWNVTAIALDRYWSITRHMEYTLRTRKCVSNVMIALTWALSAVISLAPLLFG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_076 DVLCCTASIWNVTAIALDRYWSITRHMEYTLRTRKCVSNVMIALTWALSAVISLAPLLFG
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB8 WGETYSEGSEECQVSREPSYAVFSTVGAFYLPLCVVLFVYWKIYKAAKFRVGSRKTNSVS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_076 WGETYSEGSEECQVSREPSYAVFSTVGAFYLPLCVVLFVYWKIYKAAKFRVGSRKTNSVS
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB8 PISEAVEVKDSAKQPQMVFTVRHATVTFQPEGDTWREQKEQRAALMVGILIGVFVLCWIP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_076 PISEAVEVKDSAKQPQMVFTVRHATVTFQPEGDTWREQKEQRAALMVGILIGVFVLCWIP
              250       260       270       280       290       300

              310       320       330       340       350       
pF1KB8 FFLTELISPLCSCDIPAIWKSIFLWLGYSNSFFNPLIYTAFNKNYNSAFKNFFSRQH
       :::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_076 FFLTELISPLCSCDIPAIWKSIFLWLGYSNSFFNPLIYTAFNKNYNSAFKNFFSRQH
              310       320       330       340       350       

>>NP_062874 (OMIM: 182137) 5-hydroxytryptamine receptor   (432 aa)
 initn: 641 init1: 251 opt: 709  Z-score: 721.3  bits: 142.3 E(85289): 1.9e-33
Smith-Waterman score: 709; 37.1% identity (70.2% similar) in 329 aa overlap (41-357:82-403)

               20        30        40        50        60        70
pF1KB8 SLSTPSPLETNHSLGKDDLRPSSPLLSVFGVLILTLLGFLVAATFAWNLLVLATILRVRT
                                     :.: ..: ...  :.: : ::. ..  :. 
NP_062 VTASPAPTWDAPPDNASGCGEQINYGRVEKVVIGSILTLITLLTIAGNCLVVISVCFVKK
              60        70        80        90       100       110 

                80        90       100       110       120         
pF1KB8 FHRVPHN-LVASMAVSDVLVAALVMPLSLVHELSGRRWQLGRRLCQLWIACDVLCCTASI
       . : : : :..:.:..:. ::. :::.  : .: : .: .:. .:...:: ::.::::::
NP_062 L-RQPSNYLIVSLALADLSVAVAVMPFVSVTDLIGGKWIFGHFFCNVFIAMDVMCCTASI
              120       130       140       150       160       170

     130       140       150        160       170       180        
pF1KB8 WNVTAIALDRYWSITRHMEYTLRTR-KCVSNVMIALTWALSAVISLAPLLFGWGETYSEG
        .. .:..::: .::: . : .:   ::... ::  .: ::: :.: :: :::... .. 
NP_062 MTLCVISIDRYLGITRPLTYPVRQNGKCMAK-MILSVWLLSASITLPPL-FGWAQNVND-
              180       190       200        210        220        

      190       200       210       220       230          240     
pF1KB8 SEECQVSREPSYAVFSTVGAFYLPLCVVLFVYWKIYKAAKFRVGSRKTNS---VSPISEA
       .. : .:.. .:...::. :::.:. :.::.:..:::::.  ....:  .   : : : .
NP_062 DKVCLISQDFGYTIYSTAVAFYIPMSVMLFMYYQIYKAARKSAAKHKFPGFPRVEPDS-V
       230       240       250       260       270       280       

         250       260       270        280       290       300    
pF1KB8 VEVKDSAKQPQMVFTVRHATVTFQPEGDTWR-EQKEQRAALMVGILIGVFVLCWIPFFLT
       . ..  .:  . :    . .  .. :  .    ..::.::  .::..:.:..::.:::: 
NP_062 IALNGIVKLQKEVEECANLSRLLKHERKNISIFKREQKAATTLGIIVGAFTVCWLPFFLL
        290       300       310       320       330       340      

          310             320       330       340       350        
pF1KB8 ELISPL-----CSCDIPAIW-KSIFLWLGYSNSFFNPLIYTAFNKNYNSAFKNFFSRQH 
           :.     ::: :: .: .  ::::::.::..::.::. ::..  ........ :. 
NP_062 STARPFICGTSCSC-IP-LWVERTFLWLGYANSLINPFIYAFFNRDLRTTYRSLLQCQYR
        350       360         370       380       390       400    

NP_062 NINRKLSAAGMHEALKLAERPERPEFVL
          410       420       430  

>>NP_000863 (OMIM: 182137) 5-hydroxytryptamine receptor   (445 aa)
 initn: 641 init1: 251 opt: 709  Z-score: 721.2  bits: 142.3 E(85289): 2e-33
Smith-Waterman score: 709; 37.1% identity (70.2% similar) in 329 aa overlap (41-357:82-403)

               20        30        40        50        60        70
pF1KB8 SLSTPSPLETNHSLGKDDLRPSSPLLSVFGVLILTLLGFLVAATFAWNLLVLATILRVRT
                                     :.: ..: ...  :.: : ::. ..  :. 
NP_000 VTASPAPTWDAPPDNASGCGEQINYGRVEKVVIGSILTLITLLTIAGNCLVVISVCFVKK
              60        70        80        90       100       110 

                80        90       100       110       120         
pF1KB8 FHRVPHN-LVASMAVSDVLVAALVMPLSLVHELSGRRWQLGRRLCQLWIACDVLCCTASI
       . : : : :..:.:..:. ::. :::.  : .: : .: .:. .:...:: ::.::::::
NP_000 L-RQPSNYLIVSLALADLSVAVAVMPFVSVTDLIGGKWIFGHFFCNVFIAMDVMCCTASI
              120       130       140       150       160       170

     130       140       150        160       170       180        
pF1KB8 WNVTAIALDRYWSITRHMEYTLRTR-KCVSNVMIALTWALSAVISLAPLLFGWGETYSEG
        .. .:..::: .::: . : .:   ::... ::  .: ::: :.: :: :::... .. 
NP_000 MTLCVISIDRYLGITRPLTYPVRQNGKCMAK-MILSVWLLSASITLPPL-FGWAQNVND-
              180       190       200        210        220        

      190       200       210       220       230          240     
pF1KB8 SEECQVSREPSYAVFSTVGAFYLPLCVVLFVYWKIYKAAKFRVGSRKTNS---VSPISEA
       .. : .:.. .:...::. :::.:. :.::.:..:::::.  ....:  .   : : : .
NP_000 DKVCLISQDFGYTIYSTAVAFYIPMSVMLFMYYQIYKAARKSAAKHKFPGFPRVEPDS-V
       230       240       250       260       270       280       

         250       260       270        280       290       300    
pF1KB8 VEVKDSAKQPQMVFTVRHATVTFQPEGDTWR-EQKEQRAALMVGILIGVFVLCWIPFFLT
       . ..  .:  . :    . .  .. :  .    ..::.::  .::..:.:..::.:::: 
NP_000 IALNGIVKLQKEVEECANLSRLLKHERKNISIFKREQKAATTLGIIVGAFTVCWLPFFLL
        290       300       310       320       330       340      

          310             320       330       340       350        
pF1KB8 ELISPL-----CSCDIPAIW-KSIFLWLGYSNSFFNPLIYTAFNKNYNSAFKNFFSRQH 
           :.     ::: :: .: .  ::::::.::..::.::. ::..  ........ :. 
NP_000 STARPFICGTSCSC-IP-LWVERTFLWLGYANSLINPFIYAFFNRDLRTTYRSLLQCQYR
        350       360         370       380       390       400    

NP_000 NINRKLSAAGMHEALKLAERPERPEFVLQNADYCRKKGHDS
          410       420       430       440     

>>NP_062873 (OMIM: 182137) 5-hydroxytryptamine receptor   (479 aa)
 initn: 641 init1: 251 opt: 709  Z-score: 720.8  bits: 142.3 E(85289): 2.1e-33
Smith-Waterman score: 709; 37.1% identity (70.2% similar) in 329 aa overlap (41-357:82-403)

               20        30        40        50        60        70
pF1KB8 SLSTPSPLETNHSLGKDDLRPSSPLLSVFGVLILTLLGFLVAATFAWNLLVLATILRVRT
                                     :.: ..: ...  :.: : ::. ..  :. 
NP_062 VTASPAPTWDAPPDNASGCGEQINYGRVEKVVIGSILTLITLLTIAGNCLVVISVCFVKK
              60        70        80        90       100       110 

                80        90       100       110       120         
pF1KB8 FHRVPHN-LVASMAVSDVLVAALVMPLSLVHELSGRRWQLGRRLCQLWIACDVLCCTASI
       . : : : :..:.:..:. ::. :::.  : .: : .: .:. .:...:: ::.::::::
NP_062 L-RQPSNYLIVSLALADLSVAVAVMPFVSVTDLIGGKWIFGHFFCNVFIAMDVMCCTASI
              120       130       140       150       160       170

     130       140       150        160       170       180        
pF1KB8 WNVTAIALDRYWSITRHMEYTLRTR-KCVSNVMIALTWALSAVISLAPLLFGWGETYSEG
        .. .:..::: .::: . : .:   ::... ::  .: ::: :.: :: :::... .. 
NP_062 MTLCVISIDRYLGITRPLTYPVRQNGKCMAK-MILSVWLLSASITLPPL-FGWAQNVND-
              180       190       200        210        220        

      190       200       210       220       230          240     
pF1KB8 SEECQVSREPSYAVFSTVGAFYLPLCVVLFVYWKIYKAAKFRVGSRKTNS---VSPISEA
       .. : .:.. .:...::. :::.:. :.::.:..:::::.  ....:  .   : : : .
NP_062 DKVCLISQDFGYTIYSTAVAFYIPMSVMLFMYYQIYKAARKSAAKHKFPGFPRVEPDS-V
       230       240       250       260       270       280       

         250       260       270        280       290       300    
pF1KB8 VEVKDSAKQPQMVFTVRHATVTFQPEGDTWR-EQKEQRAALMVGILIGVFVLCWIPFFLT
       . ..  .:  . :    . .  .. :  .    ..::.::  .::..:.:..::.:::: 
NP_062 IALNGIVKLQKEVEECANLSRLLKHERKNISIFKREQKAATTLGIIVGAFTVCWLPFFLL
        290       300       310       320       330       340      

          310             320       330       340       350        
pF1KB8 ELISPL-----CSCDIPAIW-KSIFLWLGYSNSFFNPLIYTAFNKNYNSAFKNFFSRQH 
           :.     ::: :: .: .  ::::::.::..::.::. ::..  ........ :. 
NP_062 STARPFICGTSCSC-IP-LWVERTFLWLGYANSLINPFIYAFFNRDLRTTYRSLLQCQYR
        350       360         370       380       390       400    

NP_062 NINRKLSAAGMHEALKLAERPERPEFVLRACTRRVLLRPEKRPPVSVWVLQSPDHHNWLA
          410       420       430       440       450       460    

>>NP_150645 (OMIM: 104221) alpha-1A adrenergic receptor   (429 aa)
 initn: 389 init1: 193 opt: 675  Z-score: 687.4  bits: 136.0 E(85289): 1.5e-31
Smith-Waterman score: 675; 34.7% identity (65.0% similar) in 346 aa overlap (18-356:4-344)

               10        20        30        40        50        60
pF1KB8 MDLPVNLTSFSLSTPSPLETNHSLGKDDLRPSSPLLSVFGVLILTLLGFLVAATFAWNLL
                        :  : : ...  .: .:.    ..:. ..:: :.      :.:
NP_150               MVFLSGNASDSSNCTQPPAPVNISKAILLGVILGGLILFGVLGNIL
                             10        20        30        40      

               70        80        90       100       110       120
pF1KB8 VLATILRVRTFHRVPHNLVASMAVSDVLVAALVMPLSLVHELSGRRWQLGRRLCQLWIAC
       :. ..   : .: : :  ....::.:.:... :.:.: . :. :  : .:: .:..: : 
NP_150 VILSVACHRHLHSVTHYYIVNLAVADLLLTSTVLPFSAIFEVLGY-WAFGRVFCNIWAAV
         50        60        70        80        90        100     

              130       140        150       160        170        
pF1KB8 DVLCCTASIWNVTAIALDRYWSITRHMEY-TLRTRKCVSNVMIAL-TWALSAVISLAPLL
       ::::::::: ..  :..::: ...  ..: :. :..   ..:  : .:::: :::..:: 
NP_150 DVLCCTASIMGLCIISIDRYIGVSYPLRYPTIVTQR--RGLMALLCVWALSLVISIGPL-
         110       120       130       140         150       160   

      180       190       200       210       220       230        
pF1KB8 FGWGETYSEGSEECQVSREPSYAVFSTVGAFYLPLCVVLFVYWKIYKAAKFRVGSRKTN-
       ::: .   :    ::...::.:..::..:.::::: ..: .: ..: .:: .  . :.. 
NP_150 FGWRQPAPEDETICQINEEPGYVLFSALGSFYLPLAIILVMYCRVYVVAKRESRGLKSGL
            170       180       190       200       210       220  

        240       250        260       270       280       290     
pF1KB8 -SVSPISEAVEVKDSAKQ-PQMVFTVRHATVTFQPEGDTWREQKEQRAALMVGILIGVFV
        . .  :: : ..   :. :     .  : .  .      . ..:..::  .::..: ::
NP_150 KTDKSDSEQVTLRIHRKNAPAGGSGMASAKTKTHFSVRLLKFSREKKAAKTLGIVVGCFV
            230       240       250       260       270       280  

         300       310         320       330       340       350   
pF1KB8 LCWIPFFLTELISPLCSCDIPA--IWKSIFLWLGYSNSFFNPLIYTAFNKNYNSAFKNFF
       :::.::::.  :. .     :.  ..: .: :::: :: .::.::   ......::.: .
NP_150 LCWLPFFLVMPIGSFFPDFKPSETVFKIVF-WLGYLNSCINPIIYPCSSQEFKKAFQNVL
            290       300       310        320       330       340 

                                                                   
pF1KB8 SRQH                                                        
         :                                                         
NP_150 RIQCLCRKQSSKHALGYTLHPPSQAVEGQHKDMVRIPVGSRETFYRISKTDGVCEWKFFS
             350       360       370       380       390       400 

>>XP_006716356 (OMIM: 104221) PREDICTED: alpha-1A adrene  (429 aa)
 initn: 389 init1: 193 opt: 675  Z-score: 687.4  bits: 136.0 E(85289): 1.5e-31
Smith-Waterman score: 675; 34.7% identity (65.0% similar) in 346 aa overlap (18-356:4-344)

               10        20        30        40        50        60
pF1KB8 MDLPVNLTSFSLSTPSPLETNHSLGKDDLRPSSPLLSVFGVLILTLLGFLVAATFAWNLL
                        :  : : ...  .: .:.    ..:. ..:: :.      :.:
XP_006               MVFLSGNASDSSNCTQPPAPVNISKAILLGVILGGLILFGVLGNIL
                             10        20        30        40      

               70        80        90       100       110       120
pF1KB8 VLATILRVRTFHRVPHNLVASMAVSDVLVAALVMPLSLVHELSGRRWQLGRRLCQLWIAC
       :. ..   : .: : :  ....::.:.:... :.:.: . :. :  : .:: .:..: : 
XP_006 VILSVACHRHLHSVTHYYIVNLAVADLLLTSTVLPFSAIFEVLGY-WAFGRVFCNIWAAV
         50        60        70        80        90        100     

              130       140        150       160        170        
pF1KB8 DVLCCTASIWNVTAIALDRYWSITRHMEY-TLRTRKCVSNVMIAL-TWALSAVISLAPLL
       ::::::::: ..  :..::: ...  ..: :. :..   ..:  : .:::: :::..:: 
XP_006 DVLCCTASIMGLCIISIDRYIGVSYPLRYPTIVTQR--RGLMALLCVWALSLVISIGPL-
         110       120       130       140         150       160   

      180       190       200       210       220       230        
pF1KB8 FGWGETYSEGSEECQVSREPSYAVFSTVGAFYLPLCVVLFVYWKIYKAAKFRVGSRKTN-
       ::: .   :    ::...::.:..::..:.::::: ..: .: ..: .:: .  . :.. 
XP_006 FGWRQPAPEDETICQINEEPGYVLFSALGSFYLPLAIILVMYCRVYVVAKRESRGLKSGL
            170       180       190       200       210       220  

        240       250        260       270       280       290     
pF1KB8 -SVSPISEAVEVKDSAKQ-PQMVFTVRHATVTFQPEGDTWREQKEQRAALMVGILIGVFV
        . .  :: : ..   :. :     .  : .  .      . ..:..::  .::..: ::
XP_006 KTDKSDSEQVTLRIHRKNAPAGGSGMASAKTKTHFSVRLLKFSREKKAAKTLGIVVGCFV
            230       240       250       260       270       280  

         300       310         320       330       340       350   
pF1KB8 LCWIPFFLTELISPLCSCDIPA--IWKSIFLWLGYSNSFFNPLIYTAFNKNYNSAFKNFF
       :::.::::.  :. .     :.  ..: .: :::: :: .::.::   ......::.: .
XP_006 LCWLPFFLVMPIGSFFPDFKPSETVFKIVF-WLGYLNSCINPIIYPCSSQEFKKAFQNVL
            290       300       310        320       330       340 

                                                                   
pF1KB8 SRQH                                                        
         :                                                         
XP_006 RIQCLCRKQSSKHALGYTLHPPSQAVEGQHKDMVRIPVGSRETFYRISKTDGVCEWKFFS
             350       360       370       380       390       400 

>>NP_150647 (OMIM: 104221) alpha-1A adrenergic receptor   (455 aa)
 initn: 389 init1: 193 opt: 675  Z-score: 687.1  bits: 136.0 E(85289): 1.6e-31
Smith-Waterman score: 675; 34.7% identity (65.0% similar) in 346 aa overlap (18-356:4-344)

               10        20        30        40        50        60
pF1KB8 MDLPVNLTSFSLSTPSPLETNHSLGKDDLRPSSPLLSVFGVLILTLLGFLVAATFAWNLL
                        :  : : ...  .: .:.    ..:. ..:: :.      :.:
NP_150               MVFLSGNASDSSNCTQPPAPVNISKAILLGVILGGLILFGVLGNIL
                             10        20        30        40      

               70        80        90       100       110       120
pF1KB8 VLATILRVRTFHRVPHNLVASMAVSDVLVAALVMPLSLVHELSGRRWQLGRRLCQLWIAC
       :. ..   : .: : :  ....::.:.:... :.:.: . :. :  : .:: .:..: : 
NP_150 VILSVACHRHLHSVTHYYIVNLAVADLLLTSTVLPFSAIFEVLGY-WAFGRVFCNIWAAV
         50        60        70        80        90        100     

              130       140        150       160        170        
pF1KB8 DVLCCTASIWNVTAIALDRYWSITRHMEY-TLRTRKCVSNVMIAL-TWALSAVISLAPLL
       ::::::::: ..  :..::: ...  ..: :. :..   ..:  : .:::: :::..:: 
NP_150 DVLCCTASIMGLCIISIDRYIGVSYPLRYPTIVTQR--RGLMALLCVWALSLVISIGPL-
         110       120       130       140         150       160   

      180       190       200       210       220       230        
pF1KB8 FGWGETYSEGSEECQVSREPSYAVFSTVGAFYLPLCVVLFVYWKIYKAAKFRVGSRKTN-
       ::: .   :    ::...::.:..::..:.::::: ..: .: ..: .:: .  . :.. 
NP_150 FGWRQPAPEDETICQINEEPGYVLFSALGSFYLPLAIILVMYCRVYVVAKRESRGLKSGL
            170       180       190       200       210       220  

        240       250        260       270       280       290     
pF1KB8 -SVSPISEAVEVKDSAKQ-PQMVFTVRHATVTFQPEGDTWREQKEQRAALMVGILIGVFV
        . .  :: : ..   :. :     .  : .  .      . ..:..::  .::..: ::
NP_150 KTDKSDSEQVTLRIHRKNAPAGGSGMASAKTKTHFSVRLLKFSREKKAAKTLGIVVGCFV
            230       240       250       260       270       280  

         300       310         320       330       340       350   
pF1KB8 LCWIPFFLTELISPLCSCDIPA--IWKSIFLWLGYSNSFFNPLIYTAFNKNYNSAFKNFF
       :::.::::.  :. .     :.  ..: .: :::: :: .::.::   ......::.: .
NP_150 LCWLPFFLVMPIGSFFPDFKPSETVFKIVF-WLGYLNSCINPIIYPCSSQEFKKAFQNVL
            290       300       310        320       330       340 

                                                                   
pF1KB8 SRQH                                                        
         :                                                         
NP_150 RIQCLCRKQSSKHALGYTLHPPSQAVEGQHKDMVRIPVGSRETFYRISKTDGVCEWKFFS
             350       360       370       380       390       400 

>>NP_000671 (OMIM: 104221) alpha-1A adrenergic receptor   (466 aa)
 initn: 389 init1: 193 opt: 675  Z-score: 687.0  bits: 136.0 E(85289): 1.6e-31
Smith-Waterman score: 675; 34.7% identity (65.0% similar) in 346 aa overlap (18-356:4-344)

               10        20        30        40        50        60
pF1KB8 MDLPVNLTSFSLSTPSPLETNHSLGKDDLRPSSPLLSVFGVLILTLLGFLVAATFAWNLL
                        :  : : ...  .: .:.    ..:. ..:: :.      :.:
NP_000               MVFLSGNASDSSNCTQPPAPVNISKAILLGVILGGLILFGVLGNIL
                             10        20        30        40      

               70        80        90       100       110       120
pF1KB8 VLATILRVRTFHRVPHNLVASMAVSDVLVAALVMPLSLVHELSGRRWQLGRRLCQLWIAC
       :. ..   : .: : :  ....::.:.:... :.:.: . :. :  : .:: .:..: : 
NP_000 VILSVACHRHLHSVTHYYIVNLAVADLLLTSTVLPFSAIFEVLGY-WAFGRVFCNIWAAV
         50        60        70        80        90        100     

              130       140        150       160        170        
pF1KB8 DVLCCTASIWNVTAIALDRYWSITRHMEY-TLRTRKCVSNVMIAL-TWALSAVISLAPLL
       ::::::::: ..  :..::: ...  ..: :. :..   ..:  : .:::: :::..:: 
NP_000 DVLCCTASIMGLCIISIDRYIGVSYPLRYPTIVTQR--RGLMALLCVWALSLVISIGPL-
         110       120       130       140         150       160   

      180       190       200       210       220       230        
pF1KB8 FGWGETYSEGSEECQVSREPSYAVFSTVGAFYLPLCVVLFVYWKIYKAAKFRVGSRKTN-
       ::: .   :    ::...::.:..::..:.::::: ..: .: ..: .:: .  . :.. 
NP_000 FGWRQPAPEDETICQINEEPGYVLFSALGSFYLPLAIILVMYCRVYVVAKRESRGLKSGL
            170       180       190       200       210       220  

        240       250        260       270       280       290     
pF1KB8 -SVSPISEAVEVKDSAKQ-PQMVFTVRHATVTFQPEGDTWREQKEQRAALMVGILIGVFV
        . .  :: : ..   :. :     .  : .  .      . ..:..::  .::..: ::
NP_000 KTDKSDSEQVTLRIHRKNAPAGGSGMASAKTKTHFSVRLLKFSREKKAAKTLGIVVGCFV
            230       240       250       260       270       280  

         300       310         320       330       340       350   
pF1KB8 LCWIPFFLTELISPLCSCDIPA--IWKSIFLWLGYSNSFFNPLIYTAFNKNYNSAFKNFF
       :::.::::.  :. .     :.  ..: .: :::: :: .::.::   ......::.: .
NP_000 LCWLPFFLVMPIGSFFPDFKPSETVFKIVF-WLGYLNSCINPIIYPCSSQEFKKAFQNVL
            290       300       310        320       330       340 

                                                                   
pF1KB8 SRQH                                                        
         :                                                         
NP_000 RIQCLCRKQSSKHALGYTLHPPSQAVEGQHKDMVRIPVGSRETFYRISKTDGVCEWKFFS
             350       360       370       380       390       400 

>>XP_006716355 (OMIM: 104221) PREDICTED: alpha-1A adrene  (475 aa)
 initn: 389 init1: 193 opt: 675  Z-score: 686.9  bits: 136.1 E(85289): 1.6e-31
Smith-Waterman score: 675; 34.7% identity (65.0% similar) in 346 aa overlap (18-356:4-344)

               10        20        30        40        50        60
pF1KB8 MDLPVNLTSFSLSTPSPLETNHSLGKDDLRPSSPLLSVFGVLILTLLGFLVAATFAWNLL
                        :  : : ...  .: .:.    ..:. ..:: :.      :.:
XP_006               MVFLSGNASDSSNCTQPPAPVNISKAILLGVILGGLILFGVLGNIL
                             10        20        30        40      

               70        80        90       100       110       120
pF1KB8 VLATILRVRTFHRVPHNLVASMAVSDVLVAALVMPLSLVHELSGRRWQLGRRLCQLWIAC
       :. ..   : .: : :  ....::.:.:... :.:.: . :. :  : .:: .:..: : 
XP_006 VILSVACHRHLHSVTHYYIVNLAVADLLLTSTVLPFSAIFEVLGY-WAFGRVFCNIWAAV
         50        60        70        80        90        100     

              130       140        150       160        170        
pF1KB8 DVLCCTASIWNVTAIALDRYWSITRHMEY-TLRTRKCVSNVMIAL-TWALSAVISLAPLL
       ::::::::: ..  :..::: ...  ..: :. :..   ..:  : .:::: :::..:: 
XP_006 DVLCCTASIMGLCIISIDRYIGVSYPLRYPTIVTQR--RGLMALLCVWALSLVISIGPL-
         110       120       130       140         150       160   

      180       190       200       210       220       230        
pF1KB8 FGWGETYSEGSEECQVSREPSYAVFSTVGAFYLPLCVVLFVYWKIYKAAKFRVGSRKTN-
       ::: .   :    ::...::.:..::..:.::::: ..: .: ..: .:: .  . :.. 
XP_006 FGWRQPAPEDETICQINEEPGYVLFSALGSFYLPLAIILVMYCRVYVVAKRESRGLKSGL
            170       180       190       200       210       220  

        240       250        260       270       280       290     
pF1KB8 -SVSPISEAVEVKDSAKQ-PQMVFTVRHATVTFQPEGDTWREQKEQRAALMVGILIGVFV
        . .  :: : ..   :. :     .  : .  .      . ..:..::  .::..: ::
XP_006 KTDKSDSEQVTLRIHRKNAPAGGSGMASAKTKTHFSVRLLKFSREKKAAKTLGIVVGCFV
            230       240       250       260       270       280  

         300       310         320       330       340       350   
pF1KB8 LCWIPFFLTELISPLCSCDIPA--IWKSIFLWLGYSNSFFNPLIYTAFNKNYNSAFKNFF
       :::.::::.  :. .     :.  ..: .: :::: :: .::.::   ......::.: .
XP_006 LCWLPFFLVMPIGSFFPDFKPSETVFKIVF-WLGYLNSCINPIIYPCSSQEFKKAFQNVL
            290       300       310        320       330       340 

                                                                   
pF1KB8 SRQH                                                        
         :                                                         
XP_006 RIQCLCRKQSSKHALGYTLHPPSQAVEGQHKDMVRIPVGSRETFYRISKTDGVCEWKFFS
             350       360       370       380       390       400 

>>XP_016868583 (OMIM: 104221) PREDICTED: alpha-1A adrene  (475 aa)
 initn: 389 init1: 193 opt: 675  Z-score: 686.9  bits: 136.1 E(85289): 1.6e-31
Smith-Waterman score: 675; 34.7% identity (65.0% similar) in 346 aa overlap (18-356:4-344)

               10        20        30        40        50        60
pF1KB8 MDLPVNLTSFSLSTPSPLETNHSLGKDDLRPSSPLLSVFGVLILTLLGFLVAATFAWNLL
                        :  : : ...  .: .:.    ..:. ..:: :.      :.:
XP_016               MVFLSGNASDSSNCTQPPAPVNISKAILLGVILGGLILFGVLGNIL
                             10        20        30        40      

               70        80        90       100       110       120
pF1KB8 VLATILRVRTFHRVPHNLVASMAVSDVLVAALVMPLSLVHELSGRRWQLGRRLCQLWIAC
       :. ..   : .: : :  ....::.:.:... :.:.: . :. :  : .:: .:..: : 
XP_016 VILSVACHRHLHSVTHYYIVNLAVADLLLTSTVLPFSAIFEVLGY-WAFGRVFCNIWAAV
         50        60        70        80        90        100     

              130       140        150       160        170        
pF1KB8 DVLCCTASIWNVTAIALDRYWSITRHMEY-TLRTRKCVSNVMIAL-TWALSAVISLAPLL
       ::::::::: ..  :..::: ...  ..: :. :..   ..:  : .:::: :::..:: 
XP_016 DVLCCTASIMGLCIISIDRYIGVSYPLRYPTIVTQR--RGLMALLCVWALSLVISIGPL-
         110       120       130       140         150       160   

      180       190       200       210       220       230        
pF1KB8 FGWGETYSEGSEECQVSREPSYAVFSTVGAFYLPLCVVLFVYWKIYKAAKFRVGSRKTN-
       ::: .   :    ::...::.:..::..:.::::: ..: .: ..: .:: .  . :.. 
XP_016 FGWRQPAPEDETICQINEEPGYVLFSALGSFYLPLAIILVMYCRVYVVAKRESRGLKSGL
            170       180       190       200       210       220  

        240       250        260       270       280       290     
pF1KB8 -SVSPISEAVEVKDSAKQ-PQMVFTVRHATVTFQPEGDTWREQKEQRAALMVGILIGVFV
        . .  :: : ..   :. :     .  : .  .      . ..:..::  .::..: ::
XP_016 KTDKSDSEQVTLRIHRKNAPAGGSGMASAKTKTHFSVRLLKFSREKKAAKTLGIVVGCFV
            230       240       250       260       270       280  

         300       310         320       330       340       350   
pF1KB8 LCWIPFFLTELISPLCSCDIPA--IWKSIFLWLGYSNSFFNPLIYTAFNKNYNSAFKNFF
       :::.::::.  :. .     :.  ..: .: :::: :: .::.::   ......::.: .
XP_016 LCWLPFFLVMPIGSFFPDFKPSETVFKIVF-WLGYLNSCINPIIYPCSSQEFKKAFQNVL
            290       300       310        320       330       340 

                                                                   
pF1KB8 SRQH                                                        
         :                                                         
XP_016 RIQCLCRKQSSKHALGYTLHPPSQAVEGQHKDMVRIPVGSRETFYRISKTDGVCEWKFFS
             350       360       370       380       390       400 




357 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 16:56:37 2016 done: Fri Nov  4 16:56:38 2016
 Total Scan time:  7.930 Total Display time:  0.020

Function used was FASTA [36.3.4 Apr, 2011]
Inquiries or Suggestions ?
Send a message to flexiclone AT kazusagt.com