hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /data/smart.HMMs.bin Sequence file: /tmp/20080306/iprscan-20080306-12303318/chunk_1/iprscan-20080306-12303318.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: pF1KB8993 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- SM00415 50.2 2.7e-10 1 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- SM00415 1/1 76 194 .. 1 115 [] 50.2 2.7e-10 Alignments of top-scoring domains: SM00415: domain 1 of 1, from 76 to 194: score 50.2, E = 2.7e-10 *->qpppFltKLyqlVeDpstdkiIsWSpsGksFvvwdpeeFakelLp.. +F +KL+++Ve + IsW+++G++ v+ ++e F ke+L+++ pF1KB8993 76 LSLNFPRKLWKIVESDQFK-SISWDENGTCIVI-NEELFKKEILEtk 120 ...ryFKHnNfsSFVRQLNmYGFrKvdpieqggl.lsstgkk.tdv.ped + r F + + SFVRQLN YGF K++ +q+++ l++ + +++++ pF1KB8993 121 apyRIFQTDAIKSFVRQLNLYGFSKIQQNFQRSAfLATFLSEeKESsVLS 170 rwEF.anpdggiFkrGqpeLLknIkRk<-* + +F np+ FkrG+p+LL +kR+ pF1KB8993 171 KLKFyYNPN---FKRGYPQLLVRVKRR 194 //