Result of FASTA (omim) for pF1KB8969
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB8969, 359 aa
  1>>>pF1KB8969 359 - 359 aa - 359 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 4.5491+/-0.000524; mu= 20.9069+/- 0.032
 mean_var=88.4412+/-21.289, 0's: 0 Z-trim(107.3): 254  B-trim: 0 in 0/49
 Lambda= 0.136379
 statistics sampled from 15048 (15362) to 15048 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.525), E-opt: 0.2 (0.18), width:  16
 Scan time:  7.280

The best scores are:                                      opt bits E(85289)
NP_000950 (OMIM: 600563) prostaglandin F2-alpha re ( 359) 2355 474.3 1.9e-133
NP_001034674 (OMIM: 600563) prostaglandin F2-alpha ( 297) 1758 356.7 3.8e-98
XP_016857362 (OMIM: 600563) PREDICTED: prostagland ( 291) 1756 356.3   5e-98
XP_011526516 (OMIM: 188070,614009) PREDICTED: thro ( 343)  652 139.2 1.3e-32
NP_001051 (OMIM: 188070,614009) thromboxane A2 rec ( 343)  652 139.2 1.3e-32
NP_963998 (OMIM: 188070,614009) thromboxane A2 rec ( 407)  652 139.3 1.5e-32
NP_000946 (OMIM: 176802) prostaglandin E2 receptor ( 402)  528 114.8 3.3e-25
NP_942010 (OMIM: 176806) prostaglandin E2 receptor ( 365)  457 100.8   5e-21
NP_942009 (OMIM: 176806) prostaglandin E2 receptor ( 374)  457 100.8   5e-21
NP_942008 (OMIM: 176806) prostaglandin E2 receptor ( 388)  457 100.9 5.2e-21
NP_001119516 (OMIM: 176806) prostaglandin E2 recep ( 390)  457 100.9 5.2e-21
NP_942007 (OMIM: 176806) prostaglandin E2 receptor ( 390)  457 100.9 5.2e-21
NP_942012 (OMIM: 176806) prostaglandin E2 receptor ( 390)  457 100.9 5.2e-21
XP_011540112 (OMIM: 176806) PREDICTED: prostagland ( 410)  457 100.9 5.3e-21
NP_942011 (OMIM: 176806) prostaglandin E2 receptor ( 418)  457 100.9 5.4e-21
NP_000951 (OMIM: 600022) prostacyclin receptor [Ho ( 386)  406 90.8 5.4e-18
XP_005259152 (OMIM: 600022) PREDICTED: prostacycli ( 257)  293 68.4 2.1e-11
XP_005259150 (OMIM: 600022) PREDICTED: prostacycli ( 342)  293 68.5 2.5e-11
NP_000947 (OMIM: 176804,208550) prostaglandin E2 r ( 358)  260 62.1 2.3e-09
XP_016865146 (OMIM: 601586) PREDICTED: prostagland ( 326)  247 59.4 1.3e-08
XP_016865148 (OMIM: 601586) PREDICTED: prostagland ( 313)  243 58.6 2.1e-08
XP_016865147 (OMIM: 601586) PREDICTED: prostagland ( 325)  243 58.7 2.2e-08
XP_016865145 (OMIM: 601586) PREDICTED: prostagland ( 350)  243 58.7 2.3e-08
NP_000949 (OMIM: 601586) prostaglandin E2 receptor ( 488)  243 58.9 2.8e-08
NP_001268398 (OMIM: 604687,607277) prostaglandin D ( 296)  229 55.9 1.4e-07
XP_005267948 (OMIM: 604687,607277) PREDICTED: pros ( 359)  229 56.0 1.6e-07
NP_000944 (OMIM: 604687,607277) prostaglandin D2 r ( 359)  229 56.0 1.6e-07
NP_055137 (OMIM: 606695) opsin-3 [Homo sapiens]    ( 402)  222 54.6 4.4e-07
NP_000943 (OMIM: 173393) platelet-activating facto ( 342)  211 52.4 1.8e-06
NP_001158195 (OMIM: 173393) platelet-activating fa ( 342)  211 52.4 1.8e-06
NP_001158193 (OMIM: 173393) platelet-activating fa ( 342)  211 52.4 1.8e-06
NP_001158194 (OMIM: 173393) platelet-activating fa ( 342)  211 52.4 1.8e-06
NP_000530 (OMIM: 136880,180380,610445,613731) rhod ( 348)  209 52.0 2.4e-06
XP_016864712 (OMIM: 600933) PREDICTED: proteinase- ( 383)  207 51.7 3.3e-06
NP_005233 (OMIM: 600933) proteinase-activated rece ( 397)  207 51.7 3.4e-06
NP_001243495 (OMIM: 601919) proteinase-activated r ( 352)  204 51.0 4.7e-06
NP_004092 (OMIM: 601919) proteinase-activated rece ( 374)  204 51.1 4.9e-06
NP_001049 (OMIM: 162323) substance-P receptor isof ( 407)  203 50.9 5.9e-06
NP_001048 (OMIM: 162321) substance-K receptor [Hom ( 398)  201 50.5 7.6e-06
NP_064445 (OMIM: 300822,303700,303900) long-wave-s ( 364)  200 50.3 8.3e-06
NP_000397 (OMIM: 138850,146110) gonadotropin-relea ( 328)  196 49.4 1.3e-05
NP_001184113 (OMIM: 610118) probable G-protein cou ( 333)  195 49.2 1.5e-05
NP_006630 (OMIM: 300201) cysteinyl leukotriene rec ( 337)  194 49.0 1.8e-05
NP_001269116 (OMIM: 300201) cysteinyl leukotriene  ( 337)  194 49.0 1.8e-05
NP_001269117 (OMIM: 300201) cysteinyl leukotriene  ( 337)  194 49.0 1.8e-05
NP_001269115 (OMIM: 300201) cysteinyl leukotriene  ( 337)  194 49.0 1.8e-05
NP_001699 (OMIM: 190900,613522) short-wave-sensiti ( 348)  194 49.1 1.8e-05
XP_016859479 (OMIM: 146928) PREDICTED: C-X-C chemo ( 360)  190 48.3 3.2e-05
XP_005246587 (OMIM: 146928) PREDICTED: C-X-C chemo ( 360)  190 48.3 3.2e-05
XP_016859481 (OMIM: 146928) PREDICTED: C-X-C chemo ( 360)  190 48.3 3.2e-05


>>NP_000950 (OMIM: 600563) prostaglandin F2-alpha recept  (359 aa)
 initn: 2355 init1: 2355 opt: 2355  Z-score: 2516.8  bits: 474.3 E(85289): 1.9e-133
Smith-Waterman score: 2355; 100.0% identity (100.0% similar) in 359 aa overlap (1-359:1-359)

               10        20        30        40        50        60
pF1KB8 MSMNNSKQLVSPAAALLSNTTCQTENRLSVFFSVIFMTVGILSNSLAIAILMKAYQRFRQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_000 MSMNNSKQLVSPAAALLSNTTCQTENRLSVFFSVIFMTVGILSNSLAIAILMKAYQRFRQ
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB8 KSKASFLLLASGLVITDFFGHLINGAIAVFVYASDKEWIRFDQSNVLCSIFGICMVFSGL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_000 KSKASFLLLASGLVITDFFGHLINGAIAVFVYASDKEWIRFDQSNVLCSIFGICMVFSGL
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB8 CPLLLGSVMAIERCIGVTKPIFHSTKITSKHVKMMLSGVCLFAVFIALLPILGHRDYKIQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_000 CPLLLGSVMAIERCIGVTKPIFHSTKITSKHVKMMLSGVCLFAVFIALLPILGHRDYKIQ
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB8 ASRTWCFYNTEDIKDWEDRFYLLLFSFLGLLALGVSLLCNAITGITLLRVKFKSQQHRQG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_000 ASRTWCFYNTEDIKDWEDRFYLLLFSFLGLLALGVSLLCNAITGITLLRVKFKSQQHRQG
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB8 RSHHLEMVIQLLAIMCVSCICWSPFLVTMANIGINGNHSLETCETTLFALRMATWNQILD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_000 RSHHLEMVIQLLAIMCVSCICWSPFLVTMANIGINGNHSLETCETTLFALRMATWNQILD
              250       260       270       280       290       300

              310       320       330       340       350         
pF1KB8 PWVYILLRKAVLKNLYKLASQCCGVHVISLHIWELSSIKNSLKVAAISESPVAEKSAST
       :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_000 PWVYILLRKAVLKNLYKLASQCCGVHVISLHIWELSSIKNSLKVAAISESPVAEKSAST
              310       320       330       340       350         

>>NP_001034674 (OMIM: 600563) prostaglandin F2-alpha rec  (297 aa)
 initn: 1755 init1: 1755 opt: 1758  Z-score: 1882.9  bits: 356.7 E(85289): 3.8e-98
Smith-Waterman score: 1758; 92.2% identity (94.6% similar) in 295 aa overlap (1-295:1-293)

               10        20        30        40        50        60
pF1KB8 MSMNNSKQLVSPAAALLSNTTCQTENRLSVFFSVIFMTVGILSNSLAIAILMKAYQRFRQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MSMNNSKQLVSPAAALLSNTTCQTENRLSVFFSVIFMTVGILSNSLAIAILMKAYQRFRQ
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB8 KSKASFLLLASGLVITDFFGHLINGAIAVFVYASDKEWIRFDQSNVLCSIFGICMVFSGL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 KSKASFLLLASGLVITDFFGHLINGAIAVFVYASDKEWIRFDQSNVLCSIFGICMVFSGL
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB8 CPLLLGSVMAIERCIGVTKPIFHSTKITSKHVKMMLSGVCLFAVFIALLPILGHRDYKIQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 CPLLLGSVMAIERCIGVTKPIFHSTKITSKHVKMMLSGVCLFAVFIALLPILGHRDYKIQ
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB8 ASRTWCFYNTEDIKDWEDRFYLLLFSFLGLLALGVSLLCNAITGITLLRVKFKSQQHRQG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 ASRTWCFYNTEDIKDWEDRFYLLLFSFLGLLALGVSLLCNAITGITLLRVKFKSQQHRQG
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB8 RSHHLEMVIQLLAIMCVSCICWSPFLVTMANIGINGNHSLETCETTLFALRMATWNQILD
       ::::::::::::::::::::::::::     : .::... .. :     :.   :     
NP_001 RSHHLEMVIQLLAIMCVSCICWSPFL--GYRIILNGKEKYKVYEEQSDFLHRLQWPTLE 
              250       260         270       280       290        

              310       320       330       340       350         
pF1KB8 PWVYILLRKAVLKNLYKLASQCCGVHVISLHIWELSSIKNSLKVAAISESPVAEKSAST

>>XP_016857362 (OMIM: 600563) PREDICTED: prostaglandin F  (291 aa)
 initn: 1755 init1: 1755 opt: 1756  Z-score: 1880.9  bits: 356.3 E(85289): 5e-98
Smith-Waterman score: 1756; 95.1% identity (97.2% similar) in 284 aa overlap (1-284:1-282)

               10        20        30        40        50        60
pF1KB8 MSMNNSKQLVSPAAALLSNTTCQTENRLSVFFSVIFMTVGILSNSLAIAILMKAYQRFRQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 MSMNNSKQLVSPAAALLSNTTCQTENRLSVFFSVIFMTVGILSNSLAIAILMKAYQRFRQ
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB8 KSKASFLLLASGLVITDFFGHLINGAIAVFVYASDKEWIRFDQSNVLCSIFGICMVFSGL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 KSKASFLLLASGLVITDFFGHLINGAIAVFVYASDKEWIRFDQSNVLCSIFGICMVFSGL
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB8 CPLLLGSVMAIERCIGVTKPIFHSTKITSKHVKMMLSGVCLFAVFIALLPILGHRDYKIQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 CPLLLGSVMAIERCIGVTKPIFHSTKITSKHVKMMLSGVCLFAVFIALLPILGHRDYKIQ
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB8 ASRTWCFYNTEDIKDWEDRFYLLLFSFLGLLALGVSLLCNAITGITLLRVKFKSQQHRQG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 ASRTWCFYNTEDIKDWEDRFYLLLFSFLGLLALGVSLLCNAITGITLLRVKFKSQQHRQG
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB8 RSHHLEMVIQLLAIMCVSCICWSPFLVTMANIGINGNHSLETCETTLFALRMATWNQILD
       ::::::::::::::::::::::::::     : .::... .. :                
XP_016 RSHHLEMVIQLLAIMCVSCICWSPFL--GYRIILNGKEKYKVYEEQSDFLHRK       
              250       260         270       280       290        

              310       320       330       340       350         
pF1KB8 PWVYILLRKAVLKNLYKLASQCCGVHVISLHIWELSSIKNSLKVAAISESPVAEKSAST

>>XP_011526516 (OMIM: 188070,614009) PREDICTED: thrombox  (343 aa)
 initn: 645 init1: 311 opt: 652  Z-score: 706.2  bits: 139.2 E(85289): 1.3e-32
Smith-Waterman score: 652; 40.2% identity (66.2% similar) in 311 aa overlap (18-315:15-319)

               10        20          30        40        50        
pF1KB8 MSMNNSKQLVSPAAALLSNTTCQTENRL--SVFFSVIFMTVGILSNSLAIAILMKAYQRF
                        .: : . : ::  : .:.. : .::. :: ::...:  : :  
XP_011    MWPNGSSLGPCFRPTNITLE-ERRLIASPWFAASFCVVGLASNLLALSVLAGARQG-
                  10        20         30        40        50      

       60        70        80        90       100       110        
pF1KB8 RQKSKASFLLLASGLVITDFFGHLINGAIAVFVYASDKEWIRFDQSNVLCSIFGICMVFS
        .....::: .  :::.:::.: :..:.:.:  .:.  ::   : .  :: ..:. :.: 
XP_011 GSHTRSSFLTFLCGLVLTDFLGLLVTGTIVVSQHAALFEWHAVDPGCRLCRFMGVVMIFF
          60        70        80        90       100       110     

      120       130       140       150       160        170       
pF1KB8 GLCPLLLGSVMAIERCIGVTKPIFHSTKITSKHVKMMLSGVCLFAVF-IALLPILGHRDY
       :: :::::..:: :: .:.:.: :    ..:..      :.   :.. ..:::.::   :
XP_011 GLSPLLLGAAMASERYLGITRP-FSRPAVASQRRAWATVGLVWAAALALGLLPLLGVGRY
         120       130        140       150       160       170    

       180       190       200       210       220       230       
pF1KB8 KIQASRTWCFYNTEDIKDWEDRFYLLLFSFLGLLALGVSLLCNAITGITLLRVKFKSQQH
        .:   .::: .     .  :  . ::::.:: :..:.:.: :...  :: .: ...:. 
XP_011 TVQYPGSWCFLTLG--AESGDVAFGLLFSMLGGLSVGLSFLLNTVSVATLCHV-YHGQEA
          180         190       200       210       220        230 

       240         250       260       270               280       
pF1KB8 RQGRSH--HLEMVIQLLAIMCVSCICWSPFLVTMAN--------IGINGNHSLETCETTL
        : : .  ..::. :::.:: :. .:: :.:: .:.        ..  :. :  : .  :
XP_011 AQQRPRDSEVEMMAQLLGIMVVASVCWLPLLVFIAQTVLRNPPAMSPAGQLSRTTEKELL
             240       250       260       270       280       290 

       290       300       310       320       330       340       
pF1KB8 FALRMATWNQILDPWVYILLRKAVLKNLYKLASQCCGVHVISLHIWELSSIKNSLKVAAI
       . ::.::::::::::::::.:.:::. :                                
XP_011 IYLRVATWNQILDPWVYILFRRAVLRRLQPRLSTRPRSLSLQPQLTQRSGLQ        
             300       310       320       330       340           

>>NP_001051 (OMIM: 188070,614009) thromboxane A2 recepto  (343 aa)
 initn: 645 init1: 311 opt: 652  Z-score: 706.2  bits: 139.2 E(85289): 1.3e-32
Smith-Waterman score: 652; 40.2% identity (66.2% similar) in 311 aa overlap (18-315:15-319)

               10        20          30        40        50        
pF1KB8 MSMNNSKQLVSPAAALLSNTTCQTENRL--SVFFSVIFMTVGILSNSLAIAILMKAYQRF
                        .: : . : ::  : .:.. : .::. :: ::...:  : :  
NP_001    MWPNGSSLGPCFRPTNITLE-ERRLIASPWFAASFCVVGLASNLLALSVLAGARQG-
                  10        20         30        40        50      

       60        70        80        90       100       110        
pF1KB8 RQKSKASFLLLASGLVITDFFGHLINGAIAVFVYASDKEWIRFDQSNVLCSIFGICMVFS
        .....::: .  :::.:::.: :..:.:.:  .:.  ::   : .  :: ..:. :.: 
NP_001 GSHTRSSFLTFLCGLVLTDFLGLLVTGTIVVSQHAALFEWHAVDPGCRLCRFMGVVMIFF
          60        70        80        90       100       110     

      120       130       140       150       160        170       
pF1KB8 GLCPLLLGSVMAIERCIGVTKPIFHSTKITSKHVKMMLSGVCLFAVF-IALLPILGHRDY
       :: :::::..:: :: .:.:.: :    ..:..      :.   :.. ..:::.::   :
NP_001 GLSPLLLGAAMASERYLGITRP-FSRPAVASQRRAWATVGLVWAAALALGLLPLLGVGRY
         120       130        140       150       160       170    

       180       190       200       210       220       230       
pF1KB8 KIQASRTWCFYNTEDIKDWEDRFYLLLFSFLGLLALGVSLLCNAITGITLLRVKFKSQQH
        .:   .::: .     .  :  . ::::.:: :..:.:.: :...  :: .: ...:. 
NP_001 TVQYPGSWCFLTLG--AESGDVAFGLLFSMLGGLSVGLSFLLNTVSVATLCHV-YHGQEA
          180         190       200       210       220        230 

       240         250       260       270               280       
pF1KB8 RQGRSH--HLEMVIQLLAIMCVSCICWSPFLVTMAN--------IGINGNHSLETCETTL
        : : .  ..::. :::.:: :. .:: :.:: .:.        ..  :. :  : .  :
NP_001 AQQRPRDSEVEMMAQLLGIMVVASVCWLPLLVFIAQTVLRNPPAMSPAGQLSRTTEKELL
             240       250       260       270       280       290 

       290       300       310       320       330       340       
pF1KB8 FALRMATWNQILDPWVYILLRKAVLKNLYKLASQCCGVHVISLHIWELSSIKNSLKVAAI
       . ::.::::::::::::::.:.:::. :                                
NP_001 IYLRVATWNQILDPWVYILFRRAVLRRLQPRLSTRPRSLSLQPQLTQRSGLQ        
             300       310       320       330       340           

>>NP_963998 (OMIM: 188070,614009) thromboxane A2 recepto  (407 aa)
 initn: 655 init1: 311 opt: 652  Z-score: 705.4  bits: 139.3 E(85289): 1.5e-32
Smith-Waterman score: 652; 40.2% identity (66.2% similar) in 311 aa overlap (18-315:15-319)

               10        20          30        40        50        
pF1KB8 MSMNNSKQLVSPAAALLSNTTCQTENRL--SVFFSVIFMTVGILSNSLAIAILMKAYQRF
                        .: : . : ::  : .:.. : .::. :: ::...:  : :  
NP_963    MWPNGSSLGPCFRPTNITLE-ERRLIASPWFAASFCVVGLASNLLALSVLAGARQG-
                  10        20         30        40        50      

       60        70        80        90       100       110        
pF1KB8 RQKSKASFLLLASGLVITDFFGHLINGAIAVFVYASDKEWIRFDQSNVLCSIFGICMVFS
        .....::: .  :::.:::.: :..:.:.:  .:.  ::   : .  :: ..:. :.: 
NP_963 GSHTRSSFLTFLCGLVLTDFLGLLVTGTIVVSQHAALFEWHAVDPGCRLCRFMGVVMIFF
          60        70        80        90       100       110     

      120       130       140       150       160        170       
pF1KB8 GLCPLLLGSVMAIERCIGVTKPIFHSTKITSKHVKMMLSGVCLFAVF-IALLPILGHRDY
       :: :::::..:: :: .:.:.: :    ..:..      :.   :.. ..:::.::   :
NP_963 GLSPLLLGAAMASERYLGITRP-FSRPAVASQRRAWATVGLVWAAALALGLLPLLGVGRY
         120       130        140       150       160       170    

       180       190       200       210       220       230       
pF1KB8 KIQASRTWCFYNTEDIKDWEDRFYLLLFSFLGLLALGVSLLCNAITGITLLRVKFKSQQH
        .:   .::: .     .  :  . ::::.:: :..:.:.: :...  :: .: ...:. 
NP_963 TVQYPGSWCFLTLG--AESGDVAFGLLFSMLGGLSVGLSFLLNTVSVATLCHV-YHGQEA
          180         190       200       210       220        230 

       240         250       260       270               280       
pF1KB8 RQGRSH--HLEMVIQLLAIMCVSCICWSPFLVTMAN--------IGINGNHSLETCETTL
        : : .  ..::. :::.:: :. .:: :.:: .:.        ..  :. :  : .  :
NP_963 AQQRPRDSEVEMMAQLLGIMVVASVCWLPLLVFIAQTVLRNPPAMSPAGQLSRTTEKELL
             240       250       260       270       280       290 

       290       300       310       320       330       340       
pF1KB8 FALRMATWNQILDPWVYILLRKAVLKNLYKLASQCCGVHVISLHIWELSSIKNSLKVAAI
       . ::.::::::::::::::.:.:::. :                                
NP_963 IYLRVATWNQILDPWVYILFRRAVLRRLQPRLSTRPRRSLTLWPSLEYSGTISAHCNLRL
             300       310       320       330       340       350 

>>NP_000946 (OMIM: 176802) prostaglandin E2 receptor EP1  (402 aa)
 initn: 785 init1: 369 opt: 528  Z-score: 573.6  bits: 114.8 E(85289): 3.3e-25
Smith-Waterman score: 734; 34.1% identity (62.1% similar) in 393 aa overlap (1-340:7-393)

                     10        20        30        40        50    
pF1KB8       MSMNNSKQLVSPAAALLSNTTCQTENRLSVFFSVIFMTVGILSNSLAIAILMKA
             .... . . .. ::  . ::.    .  :  . .. ::.: .:: ::.:.: .:
NP_000 MSPCGPLNLSLAGEATTCAAPWVPNTSAVPPSGASPALPIFSMTLGAVSNLLALALLAQA
               10        20        30        40        50        60

           60         70        80        90       100       110   
pF1KB8 YQRFRQK-SKASFLLLASGLVITDFFGHLINGAIAVFVYASDKEWIRFDQSNVLCSIFGI
         :.:.. : :.:::....:. ::. ::.: ::... .:.. .       ..  : ..: 
NP_000 AGRLRRRRSAATFLLFVASLLATDLAGHVIPGALVLRLYTAGRA-----PAGGACHFLGG
               70        80        90       100            110     

           120       130       140       150       160       170   
pF1KB8 CMVFSGLCPLLLGSVMAIERCIGVTKPIFHSTKITSKHVKMMLSGVCLFAVFIALLPILG
       :::: ::::::::  ::.:::.:::.:..:.....  .... :..:   :. .::::.  
NP_000 CMVFFGLCPLLLGCGMAVERCVGVTRPLLHAARVSVARARLALAAVAAVALAVALLPLAR
         120       130       140       150       160       170     

           180       190       200       210       220       230   
pF1KB8 HRDYKIQASRTWCFYNTEDIKDWEDRFYLLLFSFLGLLALGVSLLCNAITGITLLRVKFK
          :..:   :::: .      :.. .   ::. :::.:: ..:.::...:..:::....
NP_000 VGRYELQYPGTWCFIGLGPPGGWRQALLAGLFASLGLVALLAALVCNTLSGLALLRARWR
         180       190       200       210       220       230     

                                                         240       
pF1KB8 ----------------------------------------------SQQHRQGRSHHLEM
                                                     : . :..:.: .::
NP_000 RRSRRPPPASGPDSRRRWGAHGPRSASASSASSIASASTFFGGSRSSGSARRARAHDVEM
         240       250       260       270       280       290     

       250       260       270       280       290       300       
pF1KB8 VIQLLAIMCVSCICWSPFLVTMANIGINGNHSLETCETTLFALRMATWNQILDPWVYILL
       : ::..:: ::::::::.:: .: ....:  :    .  ..:.:.:.:::::::::::::
NP_000 VGQLVGIMVVSCICWSPMLVLVA-LAVGGWSSTSLQRPLFLAVRLASWNQILDPWVYILL
         300       310        320       330       340       350    

       310       320             330       340       350         
pF1KB8 RKAVLKNLYKLASQCCGVHV------ISLHIWELSSIKNSLKVAAISESPVAEKSAST
       :.:::..: .:     :..       ..   :: ::...                   
NP_000 RQAVLRQLLRLLPPRAGAKGGPAGLGLTPSAWEASSLRSSRHSGLSHF          
          360       370       380       390       400            

>>NP_942010 (OMIM: 176806) prostaglandin E2 receptor EP3  (365 aa)
 initn: 633 init1: 386 opt: 457  Z-score: 498.5  bits: 100.8 E(85289): 5e-21
Smith-Waterman score: 666; 36.9% identity (67.6% similar) in 309 aa overlap (28-315:50-357)

                  10        20        30        40        50       
pF1KB8    MSMNNSKQLVSPAAALLSNTTCQTENRLSVFFSVIFMTVGILSNSLAIAILMKAYQR
                                     .:: : . .. .:...:.::. .. ..:.:
NP_942 SYTGMWAPERSAEARGNLTRPPGSGEDCGSVSVAFPITMLLTGFVGNALAMLLVSRSYRR
      20        30        40        50        60        70         

        60        70        80        90       100       110       
pF1KB8 FRQKSKASFLLLASGLVITDFFGHLINGAIAVFVYASDKEWIRFDQSNVLCSIFGICMVF
        ..: : ::::  . :..::. :.:..  ... :: : ..: ..: :. ::..::. :. 
NP_942 RESKRKKSFLLCIGWLALTDLVGQLLTTPVVIVVYLSKQRWEHIDPSGRLCTFFGLTMTV
      80        90       100       110       120       130         

       120       130       140       150       160       170       
pF1KB8 SGLCPLLLGSVMAIERCIGVTKPIFHSTKITSKHVKMMLSGVCLFAVFIALLPILGHRDY
        ::  :...:.::.:: ...  : ...... .. .. .: :: : .. .::::.::  .:
NP_942 FGLSSLFIASAMAVERALAIRAPHWYASHMKTRATRAVLLGVWLAVLAFALLPVLGVGQY
     140       150       160       170       180       190         

       180       190              200       210       220          
pF1KB8 KIQASRTWCFYNT-------EDIKDWEDRFYLLLFSFLGLLALGVSLLCNAITGITLL-R
        .:   :::: .:        . ..: . :.   :.::::::: :.. ::  :  .:. :
NP_942 TVQWPGTWCFISTGRGGNGTSSSHNWGNLFFASAFAFLGLLALTVTFSCNLATIKALVSR
     200       210       220       230       240       250         

     230          240       250       260       270       280      
pF1KB8 VKFK---SQQHRQGRSHHLEMVIQLLAIMCVSCICWSPFLVTMANIGINGNHSLETCETT
        . :   ::.  :      : .:::..::::  .::::.:. : .. .: . :.: :.: 
NP_942 CRAKATASQSSAQWGRITTETAIQLMGIMCVLSVCWSPLLIMMLKMIFN-QTSVEHCKTH
     260       270       280       290       300        310        

                  290       300       310       320       330      
pF1KB8 ----------LFALRMATWNQILDPWVYILLRKAVLKNLYKLASQCCGVHVISLHIWELS
                 :.:.:.:. :::::::::.:::: .:...                     
NP_942 TEKQKECNFFLIAVRLASLNQILDPWVYLLLRKILLRKFCQEEFWGN             
      320       330       340       350       360                  

        340       350         
pF1KB8 SIKNSLKVAAISESPVAEKSAST

>>NP_942009 (OMIM: 176806) prostaglandin E2 receptor EP3  (374 aa)
 initn: 635 init1: 386 opt: 457  Z-score: 498.4  bits: 100.8 E(85289): 5e-21
Smith-Waterman score: 668; 36.5% identity (67.6% similar) in 312 aa overlap (28-318:50-360)

                  10        20        30        40        50       
pF1KB8    MSMNNSKQLVSPAAALLSNTTCQTENRLSVFFSVIFMTVGILSNSLAIAILMKAYQR
                                     .:: : . .. .:...:.::. .. ..:.:
NP_942 SYTGMWAPERSAEARGNLTRPPGSGEDCGSVSVAFPITMLLTGFVGNALAMLLVSRSYRR
      20        30        40        50        60        70         

        60        70        80        90       100       110       
pF1KB8 FRQKSKASFLLLASGLVITDFFGHLINGAIAVFVYASDKEWIRFDQSNVLCSIFGICMVF
        ..: : ::::  . :..::. :.:..  ... :: : ..: ..: :. ::..::. :. 
NP_942 RESKRKKSFLLCIGWLALTDLVGQLLTTPVVIVVYLSKQRWEHIDPSGRLCTFFGLTMTV
      80        90       100       110       120       130         

       120       130       140       150       160       170       
pF1KB8 SGLCPLLLGSVMAIERCIGVTKPIFHSTKITSKHVKMMLSGVCLFAVFIALLPILGHRDY
        ::  :...:.::.:: ...  : ...... .. .. .: :: : .. .::::.::  .:
NP_942 FGLSSLFIASAMAVERALAIRAPHWYASHMKTRATRAVLLGVWLAVLAFALLPVLGVGQY
     140       150       160       170       180       190         

       180       190              200       210       220          
pF1KB8 KIQASRTWCFYNT-------EDIKDWEDRFYLLLFSFLGLLALGVSLLCNAITGITLL-R
        .:   :::: .:        . ..: . :.   :.::::::: :.. ::  :  .:. :
NP_942 TVQWPGTWCFISTGRGGNGTSSSHNWGNLFFASAFAFLGLLALTVTFSCNLATIKALVSR
     200       210       220       230       240       250         

     230          240       250       260       270       280      
pF1KB8 VKFK---SQQHRQGRSHHLEMVIQLLAIMCVSCICWSPFLVTMANIGINGNHSLETCETT
        . :   ::.  :      : .:::..::::  .::::.:. : .. .: . :.: :.: 
NP_942 CRAKATASQSSAQWGRITTETAIQLMGIMCVLSVCWSPLLIMMLKMIFN-QTSVEHCKTH
     260       270       280       290       300        310        

                  290       300       310       320       330      
pF1KB8 ----------LFALRMATWNQILDPWVYILLRKAVLKNLYKLASQCCGVHVISLHIWELS
                 :.:.:.:. :::::::::.:::: .:... ..                  
NP_942 TEKQKECNFFLIAVRLASLNQILDPWVYLLLRKILLRKFCQMRKRRLREQEEFWGN    
      320       330       340       350       360       370        

        340       350         
pF1KB8 SIKNSLKVAAISESPVAEKSAST

>>NP_942008 (OMIM: 176806) prostaglandin E2 receptor EP3  (388 aa)
 initn: 639 init1: 386 opt: 457  Z-score: 498.2  bits: 100.9 E(85289): 5.2e-21
Smith-Waterman score: 673; 36.7% identity (67.4% similar) in 319 aa overlap (28-322:50-367)

                  10        20        30        40        50       
pF1KB8    MSMNNSKQLVSPAAALLSNTTCQTENRLSVFFSVIFMTVGILSNSLAIAILMKAYQR
                                     .:: : . .. .:...:.::. .. ..:.:
NP_942 SYTGMWAPERSAEARGNLTRPPGSGEDCGSVSVAFPITMLLTGFVGNALAMLLVSRSYRR
      20        30        40        50        60        70         

        60        70        80        90       100       110       
pF1KB8 FRQKSKASFLLLASGLVITDFFGHLINGAIAVFVYASDKEWIRFDQSNVLCSIFGICMVF
        ..: : ::::  . :..::. :.:..  ... :: : ..: ..: :. ::..::. :. 
NP_942 RESKRKKSFLLCIGWLALTDLVGQLLTTPVVIVVYLSKQRWEHIDPSGRLCTFFGLTMTV
      80        90       100       110       120       130         

       120       130       140       150       160       170       
pF1KB8 SGLCPLLLGSVMAIERCIGVTKPIFHSTKITSKHVKMMLSGVCLFAVFIALLPILGHRDY
        ::  :...:.::.:: ...  : ...... .. .. .: :: : .. .::::.::  .:
NP_942 FGLSSLFIASAMAVERALAIRAPHWYASHMKTRATRAVLLGVWLAVLAFALLPVLGVGQY
     140       150       160       170       180       190         

       180       190              200       210       220          
pF1KB8 KIQASRTWCFYNT-------EDIKDWEDRFYLLLFSFLGLLALGVSLLCNAITGITLL-R
        .:   :::: .:        . ..: . :.   :.::::::: :.. ::  :  .:. :
NP_942 TVQWPGTWCFISTGRGGNGTSSSHNWGNLFFASAFAFLGLLALTVTFSCNLATIKALVSR
     200       210       220       230       240       250         

     230          240       250       260       270       280      
pF1KB8 VKFK---SQQHRQGRSHHLEMVIQLLAIMCVSCICWSPFLVTMANIGINGNHSLETCETT
        . :   ::.  :      : .:::..::::  .::::.:. : .. .: . :.: :.: 
NP_942 CRAKATASQSSAQWGRITTETAIQLMGIMCVLSVCWSPLLIMMLKMIFNQT-SVEHCKTH
     260       270       280       290       300       310         

                  290       300       310          320       330   
pF1KB8 ----------LFALRMATWNQILDPWVYILLRKAVLKNLYKLA---SQCCGVHVISLHIW
                 :.:.:.:. :::::::::.:::: .:... ..:   :.:           
NP_942 TEKQKECNFFLIAVRLASLNQILDPWVYLLLRKILLRKFCQVANAVSSCSNDGQKGQPIS
      320       330       340       350       360       370        

           340       350         
pF1KB8 ELSSIKNSLKVAAISESPVAEKSAST
                                 
NP_942 LSNEIIQTEA                
      380                        




359 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 16:44:49 2016 done: Fri Nov  4 16:44:51 2016
 Total Scan time:  7.280 Total Display time:  0.020

Function used was FASTA [36.3.4 Apr, 2011]
Inquiries or Suggestions ?
Send a message to flexiclone AT kazusagt.com