Result of FASTA (omim) for pF1KB8853
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB8853, 76 aa
  1>>>pF1KB8853 76 - 76 aa - 76 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.1837+/-0.000291; mu= 7.5638+/- 0.018
 mean_var=53.0481+/-10.372, 0's: 0 Z-trim(116.7): 27  B-trim: 53 in 1/52
 Lambda= 0.176092
 statistics sampled from 28037 (28064) to 28037 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.723), E-opt: 0.2 (0.329), width:  16
 Scan time:  3.970

The best scores are:                                      opt bits E(85289)
XP_016869109 (OMIM: 606059) PREDICTED: cAMP-depend (  76)  463 124.9 1.2e-29
NP_862822 (OMIM: 606059) cAMP-dependent protein ki (  76)  463 124.9 1.2e-29
XP_016869110 (OMIM: 606059) PREDICTED: cAMP-depend (  76)  463 124.9 1.2e-29
NP_006814 (OMIM: 606059) cAMP-dependent protein ki (  76)  463 124.9 1.2e-29
XP_016869111 (OMIM: 606059) PREDICTED: cAMP-depend (  76)  463 124.9 1.2e-29
XP_011534238 (OMIM: 606914) PREDICTED: cAMP-depend (  78)  169 50.2 3.8e-07
NP_001257322 (OMIM: 606914) cAMP-dependent protein (  78)  169 50.2 3.8e-07
XP_011534237 (OMIM: 606914) PREDICTED: cAMP-depend (  78)  169 50.2 3.8e-07
XP_011534239 (OMIM: 606914) PREDICTED: cAMP-depend (  78)  169 50.2 3.8e-07
NP_861460 (OMIM: 606914) cAMP-dependent protein ki (  78)  169 50.2 3.8e-07
NP_115860 (OMIM: 606914) cAMP-dependent protein ki (  78)  169 50.2 3.8e-07
NP_861459 (OMIM: 606914) cAMP-dependent protein ki (  78)  169 50.2 3.8e-07
NP_001257323 (OMIM: 606914) cAMP-dependent protein (  85)  169 50.3 4.1e-07
XP_011534234 (OMIM: 606914) PREDICTED: cAMP-depend (  85)  169 50.3 4.1e-07
XP_011534233 (OMIM: 606914) PREDICTED: cAMP-depend (  85)  169 50.3 4.1e-07
XP_011534235 (OMIM: 606914) PREDICTED: cAMP-depend (  85)  169 50.3 4.1e-07
XP_011534236 (OMIM: 606914) PREDICTED: cAMP-depend (  85)  169 50.3 4.1e-07
NP_001257324 (OMIM: 606914) cAMP-dependent protein (  85)  169 50.3 4.1e-07
XP_011534232 (OMIM: 606914) PREDICTED: cAMP-depend (  85)  169 50.3 4.1e-07
NP_861521 (OMIM: 604932) cAMP-dependent protein ki (  76)  141 43.1 5.1e-05
NP_008997 (OMIM: 604932) cAMP-dependent protein ki (  76)  141 43.1 5.1e-05
NP_001268374 (OMIM: 604932) cAMP-dependent protein (  76)  141 43.1 5.1e-05
NP_001268373 (OMIM: 604932) cAMP-dependent protein (  76)  141 43.1 5.1e-05
NP_861520 (OMIM: 604932) cAMP-dependent protein ki (  76)  141 43.1 5.1e-05
XP_016883103 (OMIM: 604932) PREDICTED: cAMP-depend (  76)  141 43.1 5.1e-05
XP_016883104 (OMIM: 604932) PREDICTED: cAMP-depend (  76)  141 43.1 5.1e-05
XP_016883105 (OMIM: 604932) PREDICTED: cAMP-depend (  76)  141 43.1 5.1e-05


>>XP_016869109 (OMIM: 606059) PREDICTED: cAMP-dependent   (76 aa)
 initn: 463 init1: 463 opt: 463  Z-score: 653.2  bits: 124.9 E(85289): 1.2e-29
Smith-Waterman score: 463; 100.0% identity (100.0% similar) in 76 aa overlap (1-76:1-76)

               10        20        30        40        50        60
pF1KB8 MTDVETTYADFIASGRTGRRNAIHDILVSSASGNSNELALKLAGLDINKTEGEEDAQRSS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 MTDVETTYADFIASGRTGRRNAIHDILVSSASGNSNELALKLAGLDINKTEGEEDAQRSS
               10        20        30        40        50        60

               70      
pF1KB8 TEQSGEAQGEAAKSES
       ::::::::::::::::
XP_016 TEQSGEAQGEAAKSES
               70      

>>NP_862822 (OMIM: 606059) cAMP-dependent protein kinase  (76 aa)
 initn: 463 init1: 463 opt: 463  Z-score: 653.2  bits: 124.9 E(85289): 1.2e-29
Smith-Waterman score: 463; 100.0% identity (100.0% similar) in 76 aa overlap (1-76:1-76)

               10        20        30        40        50        60
pF1KB8 MTDVETTYADFIASGRTGRRNAIHDILVSSASGNSNELALKLAGLDINKTEGEEDAQRSS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_862 MTDVETTYADFIASGRTGRRNAIHDILVSSASGNSNELALKLAGLDINKTEGEEDAQRSS
               10        20        30        40        50        60

               70      
pF1KB8 TEQSGEAQGEAAKSES
       ::::::::::::::::
NP_862 TEQSGEAQGEAAKSES
               70      

>>XP_016869110 (OMIM: 606059) PREDICTED: cAMP-dependent   (76 aa)
 initn: 463 init1: 463 opt: 463  Z-score: 653.2  bits: 124.9 E(85289): 1.2e-29
Smith-Waterman score: 463; 100.0% identity (100.0% similar) in 76 aa overlap (1-76:1-76)

               10        20        30        40        50        60
pF1KB8 MTDVETTYADFIASGRTGRRNAIHDILVSSASGNSNELALKLAGLDINKTEGEEDAQRSS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 MTDVETTYADFIASGRTGRRNAIHDILVSSASGNSNELALKLAGLDINKTEGEEDAQRSS
               10        20        30        40        50        60

               70      
pF1KB8 TEQSGEAQGEAAKSES
       ::::::::::::::::
XP_016 TEQSGEAQGEAAKSES
               70      

>>NP_006814 (OMIM: 606059) cAMP-dependent protein kinase  (76 aa)
 initn: 463 init1: 463 opt: 463  Z-score: 653.2  bits: 124.9 E(85289): 1.2e-29
Smith-Waterman score: 463; 100.0% identity (100.0% similar) in 76 aa overlap (1-76:1-76)

               10        20        30        40        50        60
pF1KB8 MTDVETTYADFIASGRTGRRNAIHDILVSSASGNSNELALKLAGLDINKTEGEEDAQRSS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_006 MTDVETTYADFIASGRTGRRNAIHDILVSSASGNSNELALKLAGLDINKTEGEEDAQRSS
               10        20        30        40        50        60

               70      
pF1KB8 TEQSGEAQGEAAKSES
       ::::::::::::::::
NP_006 TEQSGEAQGEAAKSES
               70      

>>XP_016869111 (OMIM: 606059) PREDICTED: cAMP-dependent   (76 aa)
 initn: 463 init1: 463 opt: 463  Z-score: 653.2  bits: 124.9 E(85289): 1.2e-29
Smith-Waterman score: 463; 100.0% identity (100.0% similar) in 76 aa overlap (1-76:1-76)

               10        20        30        40        50        60
pF1KB8 MTDVETTYADFIASGRTGRRNAIHDILVSSASGNSNELALKLAGLDINKTEGEEDAQRSS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 MTDVETTYADFIASGRTGRRNAIHDILVSSASGNSNELALKLAGLDINKTEGEEDAQRSS
               10        20        30        40        50        60

               70      
pF1KB8 TEQSGEAQGEAAKSES
       ::::::::::::::::
XP_016 TEQSGEAQGEAAKSES
               70      

>>XP_011534238 (OMIM: 606914) PREDICTED: cAMP-dependent   (78 aa)
 initn: 174 init1: 160 opt: 169  Z-score: 249.3  bits: 50.2 E(85289): 3.8e-07
Smith-Waterman score: 169; 40.0% identity (75.7% similar) in 70 aa overlap (1-70:8-76)

                      10        20        30        40        50   
pF1KB8        MTDVETTYADFIASGRTGRRNAIHDILVSSASGNSNELALKLAGLDINKTEGE
              :::::.  :.: .:.:.:::::. ::  :.:. ....: ::: .:....   :
XP_011 MRTDSSKMTDVESGVANFASSARAGRRNALPDIQSSAATDGTSDLPLKLEALSVKEDAKE
               10        20        30        40        50        60

            60        70      
pF1KB8 EDAQRSSTEQSGEAQGEAAKSES
       .: .... .:  . :.:      
XP_011 KD-EKTTQDQLEKPQNEEK    
                70            

>>NP_001257322 (OMIM: 606914) cAMP-dependent protein kin  (78 aa)
 initn: 174 init1: 160 opt: 169  Z-score: 249.3  bits: 50.2 E(85289): 3.8e-07
Smith-Waterman score: 169; 40.0% identity (75.7% similar) in 70 aa overlap (1-70:8-76)

                      10        20        30        40        50   
pF1KB8        MTDVETTYADFIASGRTGRRNAIHDILVSSASGNSNELALKLAGLDINKTEGE
              :::::.  :.: .:.:.:::::. ::  :.:. ....: ::: .:....   :
NP_001 MRTDSSKMTDVESGVANFASSARAGRRNALPDIQSSAATDGTSDLPLKLEALSVKEDAKE
               10        20        30        40        50        60

            60        70      
pF1KB8 EDAQRSSTEQSGEAQGEAAKSES
       .: .... .:  . :.:      
NP_001 KD-EKTTQDQLEKPQNEEK    
                70            

>>XP_011534237 (OMIM: 606914) PREDICTED: cAMP-dependent   (78 aa)
 initn: 174 init1: 160 opt: 169  Z-score: 249.3  bits: 50.2 E(85289): 3.8e-07
Smith-Waterman score: 169; 40.0% identity (75.7% similar) in 70 aa overlap (1-70:8-76)

                      10        20        30        40        50   
pF1KB8        MTDVETTYADFIASGRTGRRNAIHDILVSSASGNSNELALKLAGLDINKTEGE
              :::::.  :.: .:.:.:::::. ::  :.:. ....: ::: .:....   :
XP_011 MRTDSSKMTDVESGVANFASSARAGRRNALPDIQSSAATDGTSDLPLKLEALSVKEDAKE
               10        20        30        40        50        60

            60        70      
pF1KB8 EDAQRSSTEQSGEAQGEAAKSES
       .: .... .:  . :.:      
XP_011 KD-EKTTQDQLEKPQNEEK    
                70            

>>XP_011534239 (OMIM: 606914) PREDICTED: cAMP-dependent   (78 aa)
 initn: 174 init1: 160 opt: 169  Z-score: 249.3  bits: 50.2 E(85289): 3.8e-07
Smith-Waterman score: 169; 40.0% identity (75.7% similar) in 70 aa overlap (1-70:8-76)

                      10        20        30        40        50   
pF1KB8        MTDVETTYADFIASGRTGRRNAIHDILVSSASGNSNELALKLAGLDINKTEGE
              :::::.  :.: .:.:.:::::. ::  :.:. ....: ::: .:....   :
XP_011 MRTDSSKMTDVESGVANFASSARAGRRNALPDIQSSAATDGTSDLPLKLEALSVKEDAKE
               10        20        30        40        50        60

            60        70      
pF1KB8 EDAQRSSTEQSGEAQGEAAKSES
       .: .... .:  . :.:      
XP_011 KD-EKTTQDQLEKPQNEEK    
                70            

>>NP_861460 (OMIM: 606914) cAMP-dependent protein kinase  (78 aa)
 initn: 174 init1: 160 opt: 169  Z-score: 249.3  bits: 50.2 E(85289): 3.8e-07
Smith-Waterman score: 169; 40.0% identity (75.7% similar) in 70 aa overlap (1-70:8-76)

                      10        20        30        40        50   
pF1KB8        MTDVETTYADFIASGRTGRRNAIHDILVSSASGNSNELALKLAGLDINKTEGE
              :::::.  :.: .:.:.:::::. ::  :.:. ....: ::: .:....   :
NP_861 MRTDSSKMTDVESGVANFASSARAGRRNALPDIQSSAATDGTSDLPLKLEALSVKEDAKE
               10        20        30        40        50        60

            60        70      
pF1KB8 EDAQRSSTEQSGEAQGEAAKSES
       .: .... .:  . :.:      
NP_861 KD-EKTTQDQLEKPQNEEK    
                70            




76 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 16:07:21 2016 done: Fri Nov  4 16:07:22 2016
 Total Scan time:  3.970 Total Display time: -0.040

Function used was FASTA [36.3.4 Apr, 2011]
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