FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB8777, 257 aa
  1>>>pF1KB8777 257 - 257 aa - 257 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.1519+/-0.000717; mu= 15.8556+/- 0.043
 mean_var=83.7308+/-16.857, 0's: 0 Z-trim(111.4): 138  B-trim: 86 in 1/51
 Lambda= 0.140162
 statistics sampled from 12210 (12385) to 12210 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.758), E-opt: 0.2 (0.38), width:  16
 Scan time:  2.350

The best scores are:                                      opt bits E(32554)
CCDS13711.1 LRRC3 gene_id:81543|Hs108|chr21        ( 257) 1754 363.9  6e-101
CCDS2644.1 LRRC3B gene_id:116135|Hs108|chr3        ( 259)  797 170.4 1.1e-42
CCDS54121.1 LRRC3C gene_id:100505591|Hs108|chr17   ( 275)  583 127.2 1.2e-29


>>CCDS13711.1 LRRC3 gene_id:81543|Hs108|chr21             (257 aa)
 initn: 1754 init1: 1754 opt: 1754  Z-score: 1925.8  bits: 363.9 E(32554): 6e-101
Smith-Waterman score: 1754; 100.0% identity (100.0% similar) in 257 aa overlap (1-257:1-257)

               10        20        30        40        50        60
pF1KB8 MGTVRPPRPSLLLVSTRESCLFLLFCLHLGAACPQPCRCPDHAGAVAVFCSLRGLQEVPE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 MGTVRPPRPSLLLVSTRESCLFLLFCLHLGAACPQPCRCPDHAGAVAVFCSLRGLQEVPE
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB8 DIPANTVLLKLDANKISHLPDGAFQHLHRLRELDLSHNAIEAIGSATFAGLAGGLRLLDL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 DIPANTVLLKLDANKISHLPDGAFQHLHRLRELDLSHNAIEAIGSATFAGLAGGLRLLDL
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB8 SYNRIQRIPKDALGKLSAKIRLSHNPLHCECALQEALWELKLDPDSVDEIACHTSVQEEF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 SYNRIQRIPKDALGKLSAKIRLSHNPLHCECALQEALWELKLDPDSVDEIACHTSVQEEF
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB8 VGKPLVQALDAGASLCSVPHRTTDVAMLVTMFGWFAMVIAYVVYYVRHNQEDARRHLEYL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 VGKPLVQALDAGASLCSVPHRTTDVAMLVTMFGWFAMVIAYVVYYVRHNQEDARRHLEYL
              190       200       210       220       230       240

              250       
pF1KB8 KSLPSAPASKDPIGPGP
       :::::::::::::::::
CCDS13 KSLPSAPASKDPIGPGP
              250       

>>CCDS2644.1 LRRC3B gene_id:116135|Hs108|chr3             (259 aa)
 initn: 784 init1: 421 opt: 797  Z-score: 879.9  bits: 170.4 E(32554): 1.1e-42
Smith-Waterman score: 797; 48.3% identity (78.1% similar) in 242 aa overlap (10-251:11-250)

                10        20        30        40        50         
pF1KB8  MGTVRPPRPSLLLVSTRESCLFLLFCLHLGAACPQPCRCPDHAGAVAVFCSLRGLQEVP
                 :: .    .: .....:.: .. ::. : : . .:.. : ::  .:.:.:
CCDS26 MNLVDLWLTRSLSMCLLLQSFVLMILCFHSASMCPKGCLC-SSSGGLNVTCSNANLKEIP
               10        20        30        40         50         

      60        70        80        90       100       110         
pF1KB8 EDIPANTVLLKLDANKISHLPDGAFQHLHRLRELDLSHNAIEAIGSATFAGLAGGLRLLD
       .:.: .:::: ::.:.:. .:.  :. ::.:: :.::.:.:: :   .: :.:  :. ::
CCDS26 RDLPPETVLLYLDSNQITSIPNEIFKDLHQLRVLNLSKNGIEFIDEHAFKGVAETLQTLD
      60        70        80        90       100       110         

     120       130       140       150       160       170         
pF1KB8 LSYNRIQRIPKDALGKLSAKIRLSHNPLHCECALQEALWELKLDPDSVDEIACHTSVQEE
       :: :::: . :.:...:.:. :...:: ::.:.::..:  .  . ... .. :.::: .:
CCDS26 LSDNRIQSVHKNAFNNLKARARIANNPWHCDCTLQQVLRSMASNHETAHNVICKTSVLDE
     120       130       140       150       160       170         

     180       190       200       210       220       230         
pF1KB8 FVGKPLVQALDAGASLCSVPHRTTDVAMLVTMFGWFAMVIAYVVYYVRHNQEDARRHLEY
        .:.:...: .  :.::..:..::: ::::::::::.:::.:::::::.:::::::::::
CCDS26 HAGRPFLNAAN-DADLCNLPKKTTDYAMLVTMFGWFTMVISYVVYYVRQNQEDARRHLEY
     180       190        200       210       220       230        

     240       250          
pF1KB8 LKSLPSAPASKDPIGPGP   
       ::::::   . :         
CCDS26 LKSLPSRQKKADEPDDISTVV
      240       250         

>>CCDS54121.1 LRRC3C gene_id:100505591|Hs108|chr17        (275 aa)
 initn: 579 init1: 436 opt: 583  Z-score: 645.7  bits: 127.2 E(32554): 1.2e-29
Smith-Waterman score: 583; 40.8% identity (66.5% similar) in 245 aa overlap (11-244:20-262)

                        10        20        30              40     
pF1KB8          MGTVRPPRPSLLLVSTRESCLFLLFCLHLGAACPQP------CRCPDHAGA
                          . .. :    : ::. .  :.. :.:      :    .:: 
CCDS54 MRMTSSSFVSYCTPGLCQFMAMLPTAGHLLPLLLVIGTGGTVPSPQVPPRGCYVAKEAGE
               10        20        30        40        50        60

          50        60        70        80        90       100     
pF1KB8 VAVFCSLRGLQEVPEDIPANTVLLKLDANKISHLPDGAFQHLHRLRELDLSHNAIEAIGS
        .  ::  ::. ::  :: .:  : ::::... .: ::::::  :.::::::::.  ...
CCDS54 RTFRCSQAGLSAVPSGIPNDTRKLYLDANQLASVPAGAFQHLPVLEELDLSHNALAHLSG
               70        80        90       100       110       120

         110       120       130       140       150       160     
pF1KB8 ATFAGLAGGLRLLDLSYNRIQRIPKDALGKLSAKIRLSHNPLHCECALQEALWELKLDPD
       :.: :: : :: :::: :..  .: .:.  :. .. :: :: ::.:::::.: ...: : 
CCDS54 AAFQGLEGTLRHLDLSANQLASVPVEAFVGLQIQVNLSANPWHCDCALQEVLRQVRLVPG
              130       140       150       160       170       180

         170       180       190            200       210       220
pF1KB8 SVDEIACHTSVQEEFVGKPLVQALDAGAS-LCSV----PHRTTDVAMLVTMFGWFAMVIA
       .   :.: .... ..::. ..  : ::   ::.      .:.::::.:::: ::.....:
CCDS54 TGTGIVCGSGARPDLVGQEFL--LLAGEEELCGSGWGGARRSTDVALLVTMGGWLTLMVA
              190       200         210       220       230        

              230       240       250       
pF1KB8 YVVYYVRHNQEDARRHLEYLKSLPSAPASKDPIGPGP
       :.:.:: .:....:: :.    ::             
CCDS54 YLVHYVWQNRDETRRSLKRAPVLPVRSEDSSILSTVV
      240       250       260       270     




257 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 15:30:32 2016 done: Fri Nov  4 15:30:32 2016
 Total Scan time:  2.350 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]