Result of FASTA (omim) for pF1KB8750
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB8750, 140 aa
  1>>>pF1KB8750 140 - 140 aa - 140 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.4094+/-0.000391; mu= 9.8964+/- 0.024
 mean_var=58.4092+/-11.682, 0's: 0 Z-trim(112.0): 20  B-trim: 709 in 2/51
 Lambda= 0.167816
 statistics sampled from 20747 (20766) to 20747 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.636), E-opt: 0.2 (0.243), width:  16
 Scan time:  4.270

The best scores are:                                      opt bits E(85289)
NP_037380 (OMIM: 605811) NTF2-related export prote ( 140)  935 234.6 3.9e-62
XP_011527532 (OMIM: 605811) PREDICTED: NTF2-relate ( 140)  935 234.6 3.9e-62
NP_001229546 (OMIM: 300320) NTF2-related export pr ( 142)  744 188.4 3.3e-48
NP_061168 (OMIM: 300320) NTF2-related export prote ( 197)  744 188.4 4.4e-48
XP_011529291 (OMIM: 300320) PREDICTED: NTF2-relate ( 141)  739 187.2 7.6e-48
XP_016885137 (OMIM: 300320) PREDICTED: NTF2-relate ( 114)  592 151.6 3.2e-37
NP_001229547 (OMIM: 300320) NTF2-related export pr ( 114)  592 151.6 3.2e-37
NP_001308968 (OMIM: 605813) nuclear transport fact ( 127)  159 46.7 1.3e-05
NP_005787 (OMIM: 605813) nuclear transport factor  ( 127)  159 46.7 1.3e-05
NP_001308970 (OMIM: 605813) nuclear transport fact ( 127)  159 46.7 1.3e-05
NP_001308969 (OMIM: 605813) nuclear transport fact ( 127)  159 46.7 1.3e-05
NP_001308967 (OMIM: 605813) nuclear transport fact ( 127)  159 46.7 1.3e-05
XP_006714813 (OMIM: 608431) PREDICTED: ras GTPase- ( 466)  131 40.1  0.0046
NP_938405 (OMIM: 608431) ras GTPase-activating pro ( 466)  131 40.1  0.0046
XP_006714812 (OMIM: 608431) PREDICTED: ras GTPase- ( 466)  131 40.1  0.0046
XP_016864411 (OMIM: 608431) PREDICTED: ras GTPase- ( 466)  131 40.1  0.0046
XP_016864412 (OMIM: 608431) PREDICTED: ras GTPase- ( 466)  131 40.1  0.0046
NP_005745 (OMIM: 608431) ras GTPase-activating pro ( 466)  131 40.1  0.0046


>>NP_037380 (OMIM: 605811) NTF2-related export protein 1  (140 aa)
 initn: 935 init1: 935 opt: 935  Z-score: 1236.5  bits: 234.6 E(85289): 3.9e-62
Smith-Waterman score: 935; 100.0% identity (100.0% similar) in 140 aa overlap (1-140:1-140)

               10        20        30        40        50        60
pF1KB8 MASVDFKTYVDQACRAAEEFVNVYYTTMDKRRRLLSRLYMGTATLVWNGNAVSGQESLSE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_037 MASVDFKTYVDQACRAAEEFVNVYYTTMDKRRRLLSRLYMGTATLVWNGNAVSGQESLSE
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB8 FFEMLPSSEFQISVVDCQPVHDEATPSQTTVLVVICGSVKFEGNKQRDFNQNFILTAQAS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_037 FFEMLPSSEFQISVVDCQPVHDEATPSQTTVLVVICGSVKFEGNKQRDFNQNFILTAQAS
               70        80        90       100       110       120

              130       140
pF1KB8 PSNTVWKIASDCFRFQDWAS
       ::::::::::::::::::::
NP_037 PSNTVWKIASDCFRFQDWAS
              130       140

>>XP_011527532 (OMIM: 605811) PREDICTED: NTF2-related ex  (140 aa)
 initn: 935 init1: 935 opt: 935  Z-score: 1236.5  bits: 234.6 E(85289): 3.9e-62
Smith-Waterman score: 935; 100.0% identity (100.0% similar) in 140 aa overlap (1-140:1-140)

               10        20        30        40        50        60
pF1KB8 MASVDFKTYVDQACRAAEEFVNVYYTTMDKRRRLLSRLYMGTATLVWNGNAVSGQESLSE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 MASVDFKTYVDQACRAAEEFVNVYYTTMDKRRRLLSRLYMGTATLVWNGNAVSGQESLSE
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB8 FFEMLPSSEFQISVVDCQPVHDEATPSQTTVLVVICGSVKFEGNKQRDFNQNFILTAQAS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 FFEMLPSSEFQISVVDCQPVHDEATPSQTTVLVVICGSVKFEGNKQRDFNQNFILTAQAS
               70        80        90       100       110       120

              130       140
pF1KB8 PSNTVWKIASDCFRFQDWAS
       ::::::::::::::::::::
XP_011 PSNTVWKIASDCFRFQDWAS
              130       140

>>NP_001229546 (OMIM: 300320) NTF2-related export protei  (142 aa)
 initn: 738 init1: 738 opt: 744  Z-score: 986.5  bits: 188.4 E(85289): 3.3e-48
Smith-Waterman score: 744; 75.4% identity (92.8% similar) in 138 aa overlap (3-140:4-141)

                10        20        30        40        50         
pF1KB8  MASVDFKTYVDQACRAAEEFVNVYYTTMDKRRRLLSRLYMGTATLVWNGNAVSGQESLS
          :.::::::::::::::::::.:: ::::::: :.:::.  :::.:::::::: ..:.
NP_001 MATSLDFKTYVDQACRAAEEFVNIYYETMDKRRRALTRLYLDKATLIWNGNAVSGLDALN
               10        20        30        40        50        60

      60        70        80        90       100       110         
pF1KB8 EFFEMLPSSEFQISVVDCQPVHDEATPSQTTVLVVICGSVKFEGNKQRDFNQNFILTAQA
       .::. :::::::....::::::..:: ::::::::  :.:::.::::. :::::.::::.
NP_001 NFFDTLPSSEFQVNMLDCQPVHEQATQSQTTVLVVTSGTVKFDGNKQHFFNQNFLLTAQS
               70        80        90       100       110       120

     120       130       140 
pF1KB8 SPSNTVWKIASDCFRFQDWAS 
       .:.::::::::::::::::.: 
NP_001 TPNNTVWKIASDCFRFQDWSSS
              130       140  

>>NP_061168 (OMIM: 300320) NTF2-related export protein 2  (197 aa)
 initn: 755 init1: 738 opt: 744  Z-score: 984.2  bits: 188.4 E(85289): 4.4e-48
Smith-Waterman score: 744; 75.4% identity (92.8% similar) in 138 aa overlap (3-140:59-196)

                                           10        20        30  
pF1KB8                             MASVDFKTYVDQACRAAEEFVNVYYTTMDKRR
                                     :.::::::::::::::::::.:: ::::::
NP_061 SHSSPADRTREEVVTPTLPEHTATRSQMATSLDFKTYVDQACRAAEEFVNIYYETMDKRR
       30        40        50        60        70        80        

             40        50        60        70        80        90  
pF1KB8 RLLSRLYMGTATLVWNGNAVSGQESLSEFFEMLPSSEFQISVVDCQPVHDEATPSQTTVL
       : :.:::.  :::.:::::::: ..:..::. :::::::....::::::..:: ::::::
NP_061 RALTRLYLDKATLIWNGNAVSGLDALNNFFDTLPSSEFQVNMLDCQPVHEQATQSQTTVL
       90       100       110       120       130       140        

            100       110       120       130       140 
pF1KB8 VVICGSVKFEGNKQRDFNQNFILTAQASPSNTVWKIASDCFRFQDWAS 
       ::  :.:::.::::. :::::.::::..:.::::::::::::::::.: 
NP_061 VVTSGTVKFDGNKQHFFNQNFLLTAQSTPNNTVWKIASDCFRFQDWSSS
      150       160       170       180       190       

>>XP_011529291 (OMIM: 300320) PREDICTED: NTF2-related ex  (141 aa)
 initn: 738 init1: 738 opt: 739  Z-score: 980.0  bits: 187.2 E(85289): 7.6e-48
Smith-Waterman score: 739; 74.3% identity (90.7% similar) in 140 aa overlap (1-140:1-140)

               10        20        30        40        50        60
pF1KB8 MASVDFKTYVDQACRAAEEFVNVYYTTMDKRRRLLSRLYMGTATLVWNGNAVSGQESLSE
       :   ::::::::::::::::::.:: ::::::: :.:::.  :::.:::::::: ..:..
XP_011 MRRKDFKTYVDQACRAAEEFVNIYYETMDKRRRALTRLYLDKATLIWNGNAVSGLDALNN
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB8 FFEMLPSSEFQISVVDCQPVHDEATPSQTTVLVVICGSVKFEGNKQRDFNQNFILTAQAS
       ::. :::::::....::::::..:: ::::::::  :.:::.::::. :::::.::::..
XP_011 FFDTLPSSEFQVNMLDCQPVHEQATQSQTTVLVVTSGTVKFDGNKQHFFNQNFLLTAQST
               70        80        90       100       110       120

              130       140 
pF1KB8 PSNTVWKIASDCFRFQDWAS 
       :.::::::::::::::::.: 
XP_011 PNNTVWKIASDCFRFQDWSSS
              130       140 

>>XP_016885137 (OMIM: 300320) PREDICTED: NTF2-related ex  (114 aa)
 initn: 602 init1: 592 opt: 592  Z-score: 789.2  bits: 151.6 E(85289): 3.2e-37
Smith-Waterman score: 592; 72.6% identity (92.0% similar) in 113 aa overlap (28-140:1-113)

               10        20        30        40        50        60
pF1KB8 MASVDFKTYVDQACRAAEEFVNVYYTTMDKRRRLLSRLYMGTATLVWNGNAVSGQESLSE
                                  :::::: :.:::.  :::.:::::::: ..:..
XP_016                            MDKRRRALTRLYLDKATLIWNGNAVSGLDALNN
                                          10        20        30   

               70        80        90       100       110       120
pF1KB8 FFEMLPSSEFQISVVDCQPVHDEATPSQTTVLVVICGSVKFEGNKQRDFNQNFILTAQAS
       ::. :::::::....::::::..:: ::::::::  :.:::.::::. :::::.::::..
XP_016 FFDTLPSSEFQVNMLDCQPVHEQATQSQTTVLVVTSGTVKFDGNKQHFFNQNFLLTAQST
            40        50        60        70        80        90   

              130       140 
pF1KB8 PSNTVWKIASDCFRFQDWAS 
       :.::::::::::::::::.: 
XP_016 PNNTVWKIASDCFRFQDWSSS
           100       110    

>>NP_001229547 (OMIM: 300320) NTF2-related export protei  (114 aa)
 initn: 602 init1: 592 opt: 592  Z-score: 789.2  bits: 151.6 E(85289): 3.2e-37
Smith-Waterman score: 592; 72.6% identity (92.0% similar) in 113 aa overlap (28-140:1-113)

               10        20        30        40        50        60
pF1KB8 MASVDFKTYVDQACRAAEEFVNVYYTTMDKRRRLLSRLYMGTATLVWNGNAVSGQESLSE
                                  :::::: :.:::.  :::.:::::::: ..:..
NP_001                            MDKRRRALTRLYLDKATLIWNGNAVSGLDALNN
                                          10        20        30   

               70        80        90       100       110       120
pF1KB8 FFEMLPSSEFQISVVDCQPVHDEATPSQTTVLVVICGSVKFEGNKQRDFNQNFILTAQAS
       ::. :::::::....::::::..:: ::::::::  :.:::.::::. :::::.::::..
NP_001 FFDTLPSSEFQVNMLDCQPVHEQATQSQTTVLVVTSGTVKFDGNKQHFFNQNFLLTAQST
            40        50        60        70        80        90   

              130       140 
pF1KB8 PSNTVWKIASDCFRFQDWAS 
       :.::::::::::::::::.: 
NP_001 PNNTVWKIASDCFRFQDWSSS
           100       110    

>>NP_001308968 (OMIM: 605813) nuclear transport factor 2  (127 aa)
 initn:  91 init1:  80 opt: 159  Z-score: 221.8  bits: 46.7 E(85289): 1.3e-05
Smith-Waterman score: 159; 26.3% identity (59.3% similar) in 118 aa overlap (20-135:14-121)

               10        20        30        40        50        60
pF1KB8 MASVDFKTYVDQACRAAEEFVNVYYTTMDKRRRLLSRLYMGTATLVWNGNAVSGQESLSE
                          :.. ::  .:. :  :. .:. .. :.:.:.  .:. .. :
NP_001       MGDKPIWEQIGSSFIQHYYQLFDNDRTQLGAIYIDASCLTWEGQQFQGKAAIVE
                     10        20        30        40        50    

               70          80        90       100       110        
pF1KB8 FFEMLPSSEFQISVV--DCQPVHDEATPSQTTVLVVICGSVKFEGNKQRDFNQNFILTAQ
        .  :: ...: :..  : ::. :      . .. .. :..: . .    :.: :.:   
NP_001 KLSSLPFQKIQHSITAQDHQPTPD------SCIISMVVGQLKADEDPIMGFHQMFLL---
           60        70              80        90       100        

      120       130       140 
pF1KB8 ASPSNTVWKIASDCFRFQDWAS 
        .  : .:  ..: ::.      
NP_001 -KNINDAWVCTNDMFRLALHNFG
          110       120       

>>NP_005787 (OMIM: 605813) nuclear transport factor 2 [H  (127 aa)
 initn:  91 init1:  80 opt: 159  Z-score: 221.8  bits: 46.7 E(85289): 1.3e-05
Smith-Waterman score: 159; 26.3% identity (59.3% similar) in 118 aa overlap (20-135:14-121)

               10        20        30        40        50        60
pF1KB8 MASVDFKTYVDQACRAAEEFVNVYYTTMDKRRRLLSRLYMGTATLVWNGNAVSGQESLSE
                          :.. ::  .:. :  :. .:. .. :.:.:.  .:. .. :
NP_005       MGDKPIWEQIGSSFIQHYYQLFDNDRTQLGAIYIDASCLTWEGQQFQGKAAIVE
                     10        20        30        40        50    

               70          80        90       100       110        
pF1KB8 FFEMLPSSEFQISVV--DCQPVHDEATPSQTTVLVVICGSVKFEGNKQRDFNQNFILTAQ
        .  :: ...: :..  : ::. :      . .. .. :..: . .    :.: :.:   
NP_005 KLSSLPFQKIQHSITAQDHQPTPD------SCIISMVVGQLKADEDPIMGFHQMFLL---
           60        70              80        90       100        

      120       130       140 
pF1KB8 ASPSNTVWKIASDCFRFQDWAS 
        .  : .:  ..: ::.      
NP_005 -KNINDAWVCTNDMFRLALHNFG
          110       120       

>>NP_001308970 (OMIM: 605813) nuclear transport factor 2  (127 aa)
 initn:  91 init1:  80 opt: 159  Z-score: 221.8  bits: 46.7 E(85289): 1.3e-05
Smith-Waterman score: 159; 26.3% identity (59.3% similar) in 118 aa overlap (20-135:14-121)

               10        20        30        40        50        60
pF1KB8 MASVDFKTYVDQACRAAEEFVNVYYTTMDKRRRLLSRLYMGTATLVWNGNAVSGQESLSE
                          :.. ::  .:. :  :. .:. .. :.:.:.  .:. .. :
NP_001       MGDKPIWEQIGSSFIQHYYQLFDNDRTQLGAIYIDASCLTWEGQQFQGKAAIVE
                     10        20        30        40        50    

               70          80        90       100       110        
pF1KB8 FFEMLPSSEFQISVV--DCQPVHDEATPSQTTVLVVICGSVKFEGNKQRDFNQNFILTAQ
        .  :: ...: :..  : ::. :      . .. .. :..: . .    :.: :.:   
NP_001 KLSSLPFQKIQHSITAQDHQPTPD------SCIISMVVGQLKADEDPIMGFHQMFLL---
           60        70              80        90       100        

      120       130       140 
pF1KB8 ASPSNTVWKIASDCFRFQDWAS 
        .  : .:  ..: ::.      
NP_001 -KNINDAWVCTNDMFRLALHNFG
          110       120       




140 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 15:13:30 2016 done: Fri Nov  4 15:13:31 2016
 Total Scan time:  4.270 Total Display time: -0.010

Function used was FASTA [36.3.4 Apr, 2011]
Inquiries or Suggestions ?
Send a message to flexiclone AT kazusagt.com