Result of FASTA (omim) for pF1KB8672
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB8672, 571 aa
  1>>>pF1KB8672 571 - 571 aa - 571 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.2656+/-0.000473; mu= 18.8205+/- 0.029
 mean_var=62.1643+/-12.519, 0's: 0 Z-trim(108.6): 64  B-trim: 11 in 1/54
 Lambda= 0.162669
 statistics sampled from 16658 (16693) to 16658 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.537), E-opt: 0.2 (0.196), width:  16
 Scan time:  8.280

The best scores are:                                      opt bits E(85289)
NP_055400 (OMIM: 604653,606069) solute carrier fam ( 571) 3724 883.2       0
XP_016859427 (OMIM: 604653,606069) PREDICTED: solu ( 531) 3440 816.5       0
XP_005246562 (OMIM: 604653,606069) PREDICTED: solu ( 531) 3440 816.5       0


>>NP_055400 (OMIM: 604653,606069) solute carrier family   (571 aa)
 initn: 3724 init1: 3724 opt: 3724  Z-score: 4719.7  bits: 883.2 E(85289):    0
Smith-Waterman score: 3724; 100.0% identity (100.0% similar) in 571 aa overlap (1-571:1-571)

               10        20        30        40        50        60
pF1KB8 MTRAGDHNRQRGCCGSLADYLTSAKFLLYLGHSLSTWGDRMWHFAVSVFLVELYGNSLLL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_055 MTRAGDHNRQRGCCGSLADYLTSAKFLLYLGHSLSTWGDRMWHFAVSVFLVELYGNSLLL
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB8 TAVYGLVVAGSVLVLGAIIGDWVDKNARLKVAQTSLVVQNVSVILCGIILMMVFLHKHEL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_055 TAVYGLVVAGSVLVLGAIIGDWVDKNARLKVAQTSLVVQNVSVILCGIILMMVFLHKHEL
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB8 LTMYHGWVLTSCYILIITIANIANLASTATAITIQRDWIVVVAGEDRSKLANMNATIRRI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_055 LTMYHGWVLTSCYILIITIANIANLASTATAITIQRDWIVVVAGEDRSKLANMNATIRRI
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB8 DQLTNILAPMAVGQIMTFGSPVIGCGFISGWNLVSMCVEYVLLWKVYQKTPALAVKAGLK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_055 DQLTNILAPMAVGQIMTFGSPVIGCGFISGWNLVSMCVEYVLLWKVYQKTPALAVKAGLK
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB8 EEETELKQLNLHKDTEPKPLEGTHLMGVKDSNIHELEHEQEPTCASQMAEPFRTFRDGWV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_055 EEETELKQLNLHKDTEPKPLEGTHLMGVKDSNIHELEHEQEPTCASQMAEPFRTFRDGWV
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KB8 SYYNQPVFLAGMGLAFLYMTVLGFDCITTGYAYTQGLSGSILSILMGASAITGIMGTVAF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_055 SYYNQPVFLAGMGLAFLYMTVLGFDCITTGYAYTQGLSGSILSILMGASAITGIMGTVAF
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KB8 TWLRRKCGLVRTGLISGLAQLSCLILCVISVFMPGSPLDLSVSPFEDIRSRFIQGESITP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_055 TWLRRKCGLVRTGLISGLAQLSCLILCVISVFMPGSPLDLSVSPFEDIRSRFIQGESITP
              370       380       390       400       410       420

              430       440       450       460       470       480
pF1KB8 TKIPEITTEIYMSNGSNSANIVPETSPESVPIISVSLLFAGVIAARIGLWSFDLTVTQLL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_055 TKIPEITTEIYMSNGSNSANIVPETSPESVPIISVSLLFAGVIAARIGLWSFDLTVTQLL
              430       440       450       460       470       480

              490       500       510       520       530       540
pF1KB8 QENVIESERGIINGVQNSMNYLLDLLHFIMVILAPNPEAFGLLVLISVSFVAMGHIMYFR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_055 QENVIESERGIINGVQNSMNYLLDLLHFIMVILAPNPEAFGLLVLISVSFVAMGHIMYFR
              490       500       510       520       530       540

              550       560       570 
pF1KB8 FAQNTLGNKLFACGPDAKEVRKENQANTSVV
       :::::::::::::::::::::::::::::::
NP_055 FAQNTLGNKLFACGPDAKEVRKENQANTSVV
              550       560       570 

>>XP_016859427 (OMIM: 604653,606069) PREDICTED: solute c  (531 aa)
 initn: 3440 init1: 3440 opt: 3440  Z-score: 4360.0  bits: 816.5 E(85289):    0
Smith-Waterman score: 3440; 100.0% identity (100.0% similar) in 531 aa overlap (41-571:1-531)

               20        30        40        50        60        70
pF1KB8 RGCCGSLADYLTSAKFLLYLGHSLSTWGDRMWHFAVSVFLVELYGNSLLLTAVYGLVVAG
                                     ::::::::::::::::::::::::::::::
XP_016                               MWHFAVSVFLVELYGNSLLLTAVYGLVVAG
                                             10        20        30

               80        90       100       110       120       130
pF1KB8 SVLVLGAIIGDWVDKNARLKVAQTSLVVQNVSVILCGIILMMVFLHKHELLTMYHGWVLT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 SVLVLGAIIGDWVDKNARLKVAQTSLVVQNVSVILCGIILMMVFLHKHELLTMYHGWVLT
               40        50        60        70        80        90

              140       150       160       170       180       190
pF1KB8 SCYILIITIANIANLASTATAITIQRDWIVVVAGEDRSKLANMNATIRRIDQLTNILAPM
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 SCYILIITIANIANLASTATAITIQRDWIVVVAGEDRSKLANMNATIRRIDQLTNILAPM
              100       110       120       130       140       150

              200       210       220       230       240       250
pF1KB8 AVGQIMTFGSPVIGCGFISGWNLVSMCVEYVLLWKVYQKTPALAVKAGLKEEETELKQLN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 AVGQIMTFGSPVIGCGFISGWNLVSMCVEYVLLWKVYQKTPALAVKAGLKEEETELKQLN
              160       170       180       190       200       210

              260       270       280       290       300       310
pF1KB8 LHKDTEPKPLEGTHLMGVKDSNIHELEHEQEPTCASQMAEPFRTFRDGWVSYYNQPVFLA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 LHKDTEPKPLEGTHLMGVKDSNIHELEHEQEPTCASQMAEPFRTFRDGWVSYYNQPVFLA
              220       230       240       250       260       270

              320       330       340       350       360       370
pF1KB8 GMGLAFLYMTVLGFDCITTGYAYTQGLSGSILSILMGASAITGIMGTVAFTWLRRKCGLV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 GMGLAFLYMTVLGFDCITTGYAYTQGLSGSILSILMGASAITGIMGTVAFTWLRRKCGLV
              280       290       300       310       320       330

              380       390       400       410       420       430
pF1KB8 RTGLISGLAQLSCLILCVISVFMPGSPLDLSVSPFEDIRSRFIQGESITPTKIPEITTEI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 RTGLISGLAQLSCLILCVISVFMPGSPLDLSVSPFEDIRSRFIQGESITPTKIPEITTEI
              340       350       360       370       380       390

              440       450       460       470       480       490
pF1KB8 YMSNGSNSANIVPETSPESVPIISVSLLFAGVIAARIGLWSFDLTVTQLLQENVIESERG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 YMSNGSNSANIVPETSPESVPIISVSLLFAGVIAARIGLWSFDLTVTQLLQENVIESERG
              400       410       420       430       440       450

              500       510       520       530       540       550
pF1KB8 IINGVQNSMNYLLDLLHFIMVILAPNPEAFGLLVLISVSFVAMGHIMYFRFAQNTLGNKL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 IINGVQNSMNYLLDLLHFIMVILAPNPEAFGLLVLISVSFVAMGHIMYFRFAQNTLGNKL
              460       470       480       490       500       510

              560       570 
pF1KB8 FACGPDAKEVRKENQANTSVV
       :::::::::::::::::::::
XP_016 FACGPDAKEVRKENQANTSVV
              520       530 

>>XP_005246562 (OMIM: 604653,606069) PREDICTED: solute c  (531 aa)
 initn: 3440 init1: 3440 opt: 3440  Z-score: 4360.0  bits: 816.5 E(85289):    0
Smith-Waterman score: 3440; 100.0% identity (100.0% similar) in 531 aa overlap (41-571:1-531)

               20        30        40        50        60        70
pF1KB8 RGCCGSLADYLTSAKFLLYLGHSLSTWGDRMWHFAVSVFLVELYGNSLLLTAVYGLVVAG
                                     ::::::::::::::::::::::::::::::
XP_005                               MWHFAVSVFLVELYGNSLLLTAVYGLVVAG
                                             10        20        30

               80        90       100       110       120       130
pF1KB8 SVLVLGAIIGDWVDKNARLKVAQTSLVVQNVSVILCGIILMMVFLHKHELLTMYHGWVLT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 SVLVLGAIIGDWVDKNARLKVAQTSLVVQNVSVILCGIILMMVFLHKHELLTMYHGWVLT
               40        50        60        70        80        90

              140       150       160       170       180       190
pF1KB8 SCYILIITIANIANLASTATAITIQRDWIVVVAGEDRSKLANMNATIRRIDQLTNILAPM
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 SCYILIITIANIANLASTATAITIQRDWIVVVAGEDRSKLANMNATIRRIDQLTNILAPM
              100       110       120       130       140       150

              200       210       220       230       240       250
pF1KB8 AVGQIMTFGSPVIGCGFISGWNLVSMCVEYVLLWKVYQKTPALAVKAGLKEEETELKQLN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 AVGQIMTFGSPVIGCGFISGWNLVSMCVEYVLLWKVYQKTPALAVKAGLKEEETELKQLN
              160       170       180       190       200       210

              260       270       280       290       300       310
pF1KB8 LHKDTEPKPLEGTHLMGVKDSNIHELEHEQEPTCASQMAEPFRTFRDGWVSYYNQPVFLA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 LHKDTEPKPLEGTHLMGVKDSNIHELEHEQEPTCASQMAEPFRTFRDGWVSYYNQPVFLA
              220       230       240       250       260       270

              320       330       340       350       360       370
pF1KB8 GMGLAFLYMTVLGFDCITTGYAYTQGLSGSILSILMGASAITGIMGTVAFTWLRRKCGLV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 GMGLAFLYMTVLGFDCITTGYAYTQGLSGSILSILMGASAITGIMGTVAFTWLRRKCGLV
              280       290       300       310       320       330

              380       390       400       410       420       430
pF1KB8 RTGLISGLAQLSCLILCVISVFMPGSPLDLSVSPFEDIRSRFIQGESITPTKIPEITTEI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 RTGLISGLAQLSCLILCVISVFMPGSPLDLSVSPFEDIRSRFIQGESITPTKIPEITTEI
              340       350       360       370       380       390

              440       450       460       470       480       490
pF1KB8 YMSNGSNSANIVPETSPESVPIISVSLLFAGVIAARIGLWSFDLTVTQLLQENVIESERG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 YMSNGSNSANIVPETSPESVPIISVSLLFAGVIAARIGLWSFDLTVTQLLQENVIESERG
              400       410       420       430       440       450

              500       510       520       530       540       550
pF1KB8 IINGVQNSMNYLLDLLHFIMVILAPNPEAFGLLVLISVSFVAMGHIMYFRFAQNTLGNKL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 IINGVQNSMNYLLDLLHFIMVILAPNPEAFGLLVLISVSFVAMGHIMYFRFAQNTLGNKL
              460       470       480       490       500       510

              560       570 
pF1KB8 FACGPDAKEVRKENQANTSVV
       :::::::::::::::::::::
XP_005 FACGPDAKEVRKENQANTSVV
              520       530 




571 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 14:26:10 2016 done: Fri Nov  4 14:26:11 2016
 Total Scan time:  8.280 Total Display time:  0.010

Function used was FASTA [36.3.4 Apr, 2011]
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