Result of FASTA (ccds) for pF1KB8668
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB8668, 463 aa
  1>>>pF1KB8668 463 - 463 aa - 463 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.7459+/-0.000846; mu= 14.9077+/- 0.051
 mean_var=62.5924+/-12.489, 0's: 0 Z-trim(106.1): 28  B-trim: 419 in 1/52
 Lambda= 0.162111
 statistics sampled from 8772 (8794) to 8772 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.648), E-opt: 0.2 (0.27), width:  16
 Scan time:  2.400

The best scores are:                                      opt bits E(32554)
CCDS2909.1 UBA3 gene_id:9039|Hs108|chr3            ( 463) 3097 733.0 1.5e-211
CCDS2910.1 UBA3 gene_id:9039|Hs108|chr3            ( 449) 2969 703.1 1.5e-202
CCDS12439.1 UBA2 gene_id:10054|Hs108|chr19         ( 640)  380 97.6   4e-20
CCDS2805.1 UBA7 gene_id:7318|Hs108|chr3            (1012)  364 93.9 8.2e-19
CCDS3516.1 UBA6 gene_id:55236|Hs108|chr4           (1052)  306 80.3   1e-14


>>CCDS2909.1 UBA3 gene_id:9039|Hs108|chr3                 (463 aa)
 initn: 3097 init1: 3097 opt: 3097  Z-score: 3911.3  bits: 733.0 E(32554): 1.5e-211
Smith-Waterman score: 3097; 99.6% identity (99.6% similar) in 463 aa overlap (1-463:1-463)

               10        20        30        40        50        60
pF1KB8 MADGEEPEKKRRRIEELLAEKMAVDGGCGDTGDWEGRWNHVKKFLERSGPFTHPDFEPST
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS29 MADGEEPEKKRRRIEELLAEKMAVDGGCGDTGDWEGRWNHVKKFLERSGPFTHPDFEPST
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB8 ESLQFLLDTCKVLVIGAGGLGCELLKNLALSGFRQIHVIDMDTIDVSNLNRQFLFRPKDI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS29 ESLQFLLDTCKVLVIGAGGLGCELLKNLALSGFRQIHVIDMDTIDVSNLNRQFLFRPKDI
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB8 GRPKAEVAAEFLNDRVPNCNVVPHFYKIQDFNDTFYRQFHIIVCGLDSIIARRWINGMLI
       ::::::::::::::::::::::::: ::::::::::::::::::::::::::::::::::
CCDS29 GRPKAEVAAEFLNDRVPNCNVVPHFNKIQDFNDTFYRQFHIIVCGLDSIIARRWINGMLI
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB8 SLLNYEDGVLDPSSIVPLIDGGTEGFKGNARVILPGMTACIECTLELYPPQVNFPMCTIA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS29 SLLNYEDGVLDPSSIVPLIDGGTEGFKGNARVILPGMTACIECTLELYPPQVNFPMCTIA
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB8 SMPRLPEHCIEYVRMLQWPKEQPFGEGVPLGGDDPEHIQWIFQKSLERASQYNIRGVTYR
       :::::::::::::::::::::::::::::: :::::::::::::::::::::::::::::
CCDS29 SMPRLPEHCIEYVRMLQWPKEQPFGEGVPLDGDDPEHIQWIFQKSLERASQYNIRGVTYR
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KB8 LTQGVVKRIIPAVASTNAVIAAVCATEVFKIATSAYIPLNNYLVFNDVDGLYTYTFEAER
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS29 LTQGVVKRIIPAVASTNAVIAAVCATEVFKIATSAYIPLNNYLVFNDVDGLYTYTFEAER
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KB8 KENCPACSQLPQNIQFSPSAKLQEVLDYLTNSASLQMKSPAITATLEGKNRTLYLQSVTS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS29 KENCPACSQLPQNIQFSPSAKLQEVLDYLTNSASLQMKSPAITATLEGKNRTLYLQSVTS
              370       380       390       400       410       420

              430       440       450       460   
pF1KB8 IEERTRPNLSKTLKELGLVDGQELAVADVTTPQTVLFKLHFTS
       :::::::::::::::::::::::::::::::::::::::::::
CCDS29 IEERTRPNLSKTLKELGLVDGQELAVADVTTPQTVLFKLHFTS
              430       440       450       460   

>>CCDS2910.1 UBA3 gene_id:9039|Hs108|chr3                 (449 aa)
 initn: 2969 init1: 2969 opt: 2969  Z-score: 3749.8  bits: 703.1 E(32554): 1.5e-202
Smith-Waterman score: 2976; 96.5% identity (96.5% similar) in 463 aa overlap (1-463:1-449)

               10        20        30        40        50        60
pF1KB8 MADGEEPEKKRRRIEELLAEKMAVDGGCGDTGDWEGRWNHVKKFLERSGPFTHPDFEPST
       :::::::              :::::::::::::::::::::::::::::::::::::::
CCDS29 MADGEEP--------------MAVDGGCGDTGDWEGRWNHVKKFLERSGPFTHPDFEPST
                             10        20        30        40      

               70        80        90       100       110       120
pF1KB8 ESLQFLLDTCKVLVIGAGGLGCELLKNLALSGFRQIHVIDMDTIDVSNLNRQFLFRPKDI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS29 ESLQFLLDTCKVLVIGAGGLGCELLKNLALSGFRQIHVIDMDTIDVSNLNRQFLFRPKDI
         50        60        70        80        90       100      

              130       140       150       160       170       180
pF1KB8 GRPKAEVAAEFLNDRVPNCNVVPHFYKIQDFNDTFYRQFHIIVCGLDSIIARRWINGMLI
       ::::::::::::::::::::::::: ::::::::::::::::::::::::::::::::::
CCDS29 GRPKAEVAAEFLNDRVPNCNVVPHFNKIQDFNDTFYRQFHIIVCGLDSIIARRWINGMLI
        110       120       130       140       150       160      

              190       200       210       220       230       240
pF1KB8 SLLNYEDGVLDPSSIVPLIDGGTEGFKGNARVILPGMTACIECTLELYPPQVNFPMCTIA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS29 SLLNYEDGVLDPSSIVPLIDGGTEGFKGNARVILPGMTACIECTLELYPPQVNFPMCTIA
        170       180       190       200       210       220      

              250       260       270       280       290       300
pF1KB8 SMPRLPEHCIEYVRMLQWPKEQPFGEGVPLGGDDPEHIQWIFQKSLERASQYNIRGVTYR
       :::::::::::::::::::::::::::::: :::::::::::::::::::::::::::::
CCDS29 SMPRLPEHCIEYVRMLQWPKEQPFGEGVPLDGDDPEHIQWIFQKSLERASQYNIRGVTYR
        230       240       250       260       270       280      

              310       320       330       340       350       360
pF1KB8 LTQGVVKRIIPAVASTNAVIAAVCATEVFKIATSAYIPLNNYLVFNDVDGLYTYTFEAER
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS29 LTQGVVKRIIPAVASTNAVIAAVCATEVFKIATSAYIPLNNYLVFNDVDGLYTYTFEAER
        290       300       310       320       330       340      

              370       380       390       400       410       420
pF1KB8 KENCPACSQLPQNIQFSPSAKLQEVLDYLTNSASLQMKSPAITATLEGKNRTLYLQSVTS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS29 KENCPACSQLPQNIQFSPSAKLQEVLDYLTNSASLQMKSPAITATLEGKNRTLYLQSVTS
        350       360       370       380       390       400      

              430       440       450       460   
pF1KB8 IEERTRPNLSKTLKELGLVDGQELAVADVTTPQTVLFKLHFTS
       :::::::::::::::::::::::::::::::::::::::::::
CCDS29 IEERTRPNLSKTLKELGLVDGQELAVADVTTPQTVLFKLHFTS
        410       420       430       440         

>>CCDS12439.1 UBA2 gene_id:10054|Hs108|chr19              (640 aa)
 initn: 581 init1: 290 opt: 380  Z-score: 474.7  bits: 97.6 E(32554): 4e-20
Smith-Waterman score: 534; 41.9% identity (62.3% similar) in 236 aa overlap (71-302:19-239)

               50        60        70        80        90       100
pF1KB8 VKKFLERSGPFTHPDFEPSTESLQFLLDTCKVLVIGAGGLGCELLKNLALSGFRQIHVID
                                     .:::.::::.::::::::.:.:: .: .::
CCDS12             MALSRGLPRELAEAVAGGRVLVVGAGGIGCELLKNLVLTGFSHIDLID
                           10        20        30        40        

              110       120       130       140         150        
pF1KB8 MDTIDVSNLNRQFLFRPKDIGRPKAEVAAEFLNDRVPNCNVVPHFYKIQ--DFNDTFYRQ
       .::::::::::::::. : .:: ::.:: : . .  :. :.: .  .:.  :.:  :.::
CCDS12 LDTIDVSNLNRQFLFQKKHVGRSKAQVAKESVLQFYPKANIVAYHDSIMNPDYNVEFFRQ
       50        60        70        80        90       100        

      160       170       180       190       200       210        
pF1KB8 FHIIVCGLDSIIARRWINGMLISLLNYEDGVLDPSSIVPLIDGGTEGFKGNARVILPGMT
       : ... .::.  ::  .: : ..     :        ::::..:: :. :.. .:  :.:
CCDS12 FILVMNALDNRAARNHVNRMCLA----AD--------VPLIESGTAGYLGQVTTIKKGVT
      110       120       130                   140       150      

      220       230       240       250         260       270      
pF1KB8 ACIECTLELYPPQVNFPMCTIASMPRLPEHCIEYVRML--QWPKEQPFGEGVPLGGDDPE
        : ::  .  : : .:: ::: . :  : ::: ....:  :   :.   . :     :::
CCDS12 ECYECHPK--PTQRTFPGCTIRNTPSEPIHCIVWAKYLFNQLFGEEDADQEVSPDRADPE
        160         170       180       190       200       210    

        280       290       300       310       320       330      
pF1KB8 HIQWIFQKSLERASQYNIRGVTYRLTQGVVKRIIPAVASTNAVIAAVCATEVFKIATSAY
          :   ..  ::   :  :   :..                                  
CCDS12 -AAWEPTEAEARARASNEDGDIKRISTKEWAKSTGYDPVKLFTKLFKDDIRYLLTMDKLW
           220       230       240       250       260       270   

>>CCDS2805.1 UBA7 gene_id:7318|Hs108|chr3                 (1012 aa)
 initn: 249 init1: 188 opt: 364  Z-score: 451.2  bits: 93.9 E(32554): 8.2e-19
Smith-Waterman score: 367; 33.9% identity (57.3% similar) in 218 aa overlap (73-279:436-634)

             50        60        70        80        90            
pF1KB8 KFLERSGPFTHPDFEPSTESLQFLLDTCKVLVIGAGGLGCELLKNLALSGFRQ-----IH
                                     :..:::..:::::: .:: :.       . 
CCDS28 EDCALRGSRYDGQIAVFGAGFQEKLRRQHYLLVGAGAIGCELLKVFALVGLGAGNSGGLT
         410       420       430       440       450       460     

       100       110       120       130       140       150       
pF1KB8 VIDMDTIDVSNLNRQFLFRPKDIGRPKAEVAAEFLNDRVPNCNVVPHFYKIQD-----FN
       :.::: :. :::.:::::: .:.:::::::::       :. .:.:  : ..      ..
CCDS28 VVDMDHIERSNLSRQFLFRSQDVGRPKAEVAAAAARGLNPDLQVIPLTYPLDPTTEHIYG
         470       480       490       500       510       520     

            160       170       180       190       200       210  
pF1KB8 DTFYRQFHIIVCGLDSIIARRWINGMLISLLNYEDGVLDPSSIVPLIDGGTEGFKGNARV
       :.:. .   .. .:::. :::.. .     :.            ::...:: :  :.: :
CCDS28 DNFFSRVDGVAAALDSFQARRYVAARCTHYLK------------PLLEAGTSGTWGSATV
         530       540       550                   560       570   

            220       230        240       250       260       270 
pF1KB8 ILPGMTACIECTLELYPPQ-VNFPMCTIASMPRLPEHCIEYVRMLQWPKEQPFGEGVPLG
       ..: .:   .        . . .:.::.  .:   ::       ::: ... : :   :.
CCDS28 FMPHVTEAYRAPASAAASEDAPYPVCTVRYFPSTAEHT------LQWARHE-FEELFRLS
           580       590       600       610              620      

             280       290       300       310       320       330 
pF1KB8 GDDPEHIQWIFQKSLERASQYNIRGVTYRLTQGVVKRIIPAVASTNAVIAAVCATEVFKI
       ..  .: :                                                    
CCDS28 AETINHHQQAHTSLADMDEPQTLTLLKPVLGVLRVRPQNWQDCVAWALGHWKLCFHYGIK
        630       640       650       660       670       680      

>>CCDS3516.1 UBA6 gene_id:55236|Hs108|chr4                (1052 aa)
 initn: 460 init1: 139 opt: 306  Z-score: 377.6  bits: 80.3 E(32554): 1e-14
Smith-Waterman score: 372; 34.7% identity (61.8% similar) in 199 aa overlap (67-254:458-642)

         40        50        60        70        80        90      
pF1KB8 RWNHVKKFLERSGPFTHPDFEPSTESLQFLLDTCKVLVIGAGGLGCELLKNLALSGFR--
                                     :.. .....: :..:::.:::.:: :    
CCDS35 LGKPECEEFLPRGDRYDALRACIGDTLCQKLQNLNIFLVGCGAIGCEMLKNFALLGVGTS
       430       440       450       460       470       480       

              100       110       120       130       140       150
pF1KB8 ----QIHVIDMDTIDVSNLNRQFLFRPKDIGRPKAEVAAEFLNDRVPNCNVVPHFYKIQD
           .: : : : :. :::::::::::. : .::. .::.       . ..  :. :.  
CCDS35 KEKGMITVTDPDLIEKSNLNRQFLFRPHHIQKPKSYTAADATLKINSQIKIDAHLNKVCP
       490       500       510       520       530       540       

                   160       170       180       190       200     
pF1KB8 -----FNDTFYRQFHIIVCGLDSIIARRWINGMLISLLNYEDGVLDPSSIVPLIDGGTEG
            .:: :: .  .:. .::.. :::....  .. :             ::.:.:: :
CCDS35 TTETIYNDEFYTKQDVIITALDNVEARRYVDSRCLANLR------------PLLDSGTMG
       550       560       570       580                   590     

         210       220       230       240       250       260     
pF1KB8 FKGNARVILPGMTACIECTLELYPPQVNFPMCTIASMPRLPEHCIEYVRMLQWPKEQPFG
        ::...::.: .:   .   .  ::. ..:.::. :.:   :: :...:           
CCDS35 TKGHTEVIVPHLTESYNSHRD--PPEEEIPFCTLKSFPAAIEHTIQWARDKFESSFSHKP
         600       610         620       630       640       650   

         270       280       290       300       310       320     
pF1KB8 EGVPLGGDDPEHIQWIFQKSLERASQYNIRGVTYRLTQGVVKRIIPAVASTNAVIAAVCA
                                                                   
CCDS35 SLFNKFWQTYSSAEEVLQKIQSGHSLEGCFQVIKLLSRRPRNWSQCVELARLKFEKYFNH
           660       670       680       690       700       710   




463 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 14:23:04 2016 done: Fri Nov  4 14:23:04 2016
 Total Scan time:  2.400 Total Display time:  0.040

Function used was FASTA [36.3.4 Apr, 2011]
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