Result of FASTA (ccds) for pF1KB8461
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB8461, 192 aa
  1>>>pF1KB8461 192 - 192 aa - 192 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 4.6633+/-0.000834; mu= 16.6513+/- 0.051
 mean_var=71.6668+/-14.165, 0's: 0 Z-trim(108.9): 173  B-trim: 347 in 1/50
 Lambda= 0.151501
 statistics sampled from 10332 (10533) to 10332 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.711), E-opt: 0.2 (0.324), width:  16
 Scan time:  2.000

The best scores are:                                      opt bits E(32554)
CCDS13945.1 RAC2 gene_id:5880|Hs108|chr22          ( 192) 1290 290.6   4e-79
CCDS5348.1 RAC1 gene_id:5879|Hs108|chr7            ( 192) 1211 273.3 6.3e-74
CCDS11798.1 RAC3 gene_id:5881|Hs108|chr17          ( 192) 1185 267.6 3.3e-72
CCDS222.1 CDC42 gene_id:998|Hs108|chr1             ( 191)  925 210.8 4.1e-55
CCDS221.1 CDC42 gene_id:998|Hs108|chr1             ( 191)  916 208.8 1.6e-54
CCDS7748.1 RHOG gene_id:391|Hs108|chr11            ( 191)  913 208.2 2.6e-54
CCDS33191.1 RHOQ gene_id:23433|Hs108|chr2          ( 205)  802 184.0 5.4e-47
CCDS9757.1 RHOJ gene_id:57381|Hs108|chr14          ( 214)  766 176.1 1.3e-44
CCDS5349.1 RAC1 gene_id:5879|Hs108|chr7            ( 211)  719 165.8 1.6e-41
CCDS1575.1 RHOU gene_id:58480|Hs108|chr1           ( 258)  710 163.9 7.2e-41
CCDS854.1 RHOC gene_id:389|Hs108|chr1              ( 193)  702 162.1   2e-40
CCDS2795.1 RHOA gene_id:387|Hs108|chr3             ( 193)  700 161.6 2.7e-40
CCDS10068.1 RHOV gene_id:171177|Hs108|chr15        ( 236)  690 159.5 1.4e-39
CCDS1699.1 RHOB gene_id:388|Hs108|chr2             ( 196)  684 158.1   3e-39
CCDS9222.1 RHOF gene_id:54509|Hs108|chr12          ( 211)  650 150.7 5.5e-37
CCDS8155.1 RHOD gene_id:29984|Hs108|chr11          ( 210)  635 147.5 5.3e-36
CCDS82775.1 RHOA gene_id:387|Hs108|chr3            ( 187)  587 136.9 7.1e-33
CCDS11452.1 RND2 gene_id:8153|Hs108|chr17          ( 227)  559 130.9 5.6e-31
CCDS2190.1 RND3 gene_id:390|Hs108|chr2             ( 244)  543 127.4 6.7e-30
CCDS3458.1 RHOH gene_id:399|Hs108|chr4             ( 191)  523 122.9 1.2e-28
CCDS8771.1 RND1 gene_id:27289|Hs108|chr12          ( 232)  495 116.9 9.3e-27
CCDS7261.1 RHOBTB1 gene_id:9886|Hs108|chr10        ( 696)  352 86.1 5.2e-17
CCDS6034.1 RHOBTB2 gene_id:23221|Hs108|chr8        ( 727)  351 85.9 6.2e-17
CCDS55211.1 RHOBTB2 gene_id:23221|Hs108|chr8       ( 734)  351 85.9 6.3e-17
CCDS55210.1 RHOBTB2 gene_id:23221|Hs108|chr8       ( 749)  351 85.9 6.4e-17
CCDS73330.1 RHOD gene_id:29984|Hs108|chr11         ( 144)  266 66.7 7.8e-12
CCDS14632.1 RAP2C gene_id:57826|Hs108|chrX         ( 183)  263 66.1 1.5e-11
CCDS9485.1 RAP2A gene_id:5911|Hs108|chr13          ( 183)  263 66.1 1.5e-11
CCDS1123.1 RIT1 gene_id:6016|Hs108|chr1            ( 219)  263 66.2 1.6e-11
CCDS58037.1 RIT1 gene_id:6016|Hs108|chr1           ( 236)  263 66.2 1.7e-11
CCDS3170.1 RAP2B gene_id:5912|Hs108|chr3           ( 183)  260 65.4 2.3e-11
CCDS41846.1 RAB35 gene_id:11021|Hs108|chr12        ( 201)  257 64.8 3.8e-11
CCDS10460.1 RAB26 gene_id:25837|Hs108|chr16        ( 256)  255 64.5 6.2e-11
CCDS9271.1 RAN gene_id:5901|Hs108|chr12            ( 216)  252 63.8 8.6e-11


>>CCDS13945.1 RAC2 gene_id:5880|Hs108|chr22               (192 aa)
 initn: 1290 init1: 1290 opt: 1290  Z-score: 1534.0  bits: 290.6 E(32554): 4e-79
Smith-Waterman score: 1290; 100.0% identity (100.0% similar) in 192 aa overlap (1-192:1-192)

               10        20        30        40        50        60
pF1KB8 MQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDSKPVNLGLWDTAG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 MQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDSKPVNLGLWDTAG
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB8 QEDYDRLRPLSYPQTDVFLICFSLVSPASYENVRAKWFPEVRHHCPSTPIILVGTKLDLR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 QEDYDRLRPLSYPQTDVFLICFSLVSPASYENVRAKWFPEVRHHCPSTPIILVGTKLDLR
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB8 DDKDTIEKLKEKKLAPITYPQGLALAKEIDSVKYLECSALTQRGLKTVFDEAIRAVLCPQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 DDKDTIEKLKEKKLAPITYPQGLALAKEIDSVKYLECSALTQRGLKTVFDEAIRAVLCPQ
              130       140       150       160       170       180

              190  
pF1KB8 PTRQQKRACSLL
       ::::::::::::
CCDS13 PTRQQKRACSLL
              190  

>>CCDS5348.1 RAC1 gene_id:5879|Hs108|chr7                 (192 aa)
 initn: 1211 init1: 1211 opt: 1211  Z-score: 1440.7  bits: 273.3 E(32554): 6.3e-74
Smith-Waterman score: 1211; 92.2% identity (97.9% similar) in 192 aa overlap (1-192:1-192)

               10        20        30        40        50        60
pF1KB8 MQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDSKPVNLGLWDTAG
       :::::::::::::::::::::::::::::::::::::::::::::::.::::::::::::
CCDS53 MQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAG
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB8 QEDYDRLRPLSYPQTDVFLICFSLVSPASYENVRAKWFPEVRHHCPSTPIILVGTKLDLR
       :::::::::::::::::::::::::::::.:::::::.::::::::.:::::::::::::
CCDS53 QEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLR
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB8 DDKDTIEKLKEKKLAPITYPQGLALAKEIDSVKYLECSALTQRGLKTVFDEAIRAVLCPQ
       ::::::::::::::.:::::::::.:::: .:::::::::::::::::::::::::::: 
CCDS53 DDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAVLCPP
              130       140       150       160       170       180

              190  
pF1KB8 PTRQQKRACSLL
       :....:: : ::
CCDS53 PVKKRKRKCLLL
              190  

>>CCDS11798.1 RAC3 gene_id:5881|Hs108|chr17               (192 aa)
 initn: 1220 init1: 1185 opt: 1185  Z-score: 1409.9  bits: 267.6 E(32554): 3.3e-72
Smith-Waterman score: 1185; 88.5% identity (96.9% similar) in 192 aa overlap (1-192:1-192)

               10        20        30        40        50        60
pF1KB8 MQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDSKPVNLGLWDTAG
       :::::::::::::::::::::::::::::::::::::::::::::::.::::::::::::
CCDS11 MQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAG
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB8 QEDYDRLRPLSYPQTDVFLICFSLVSPASYENVRAKWFPEVRHHCPSTPIILVGTKLDLR
       :::::::::::::::::::::::::::::.:::::::.:::::::: :::.:::::::::
CCDS11 QEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPHTPILLVGTKLDLR
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB8 DDKDTIEKLKEKKLAPITYPQGLALAKEIDSVKYLECSALTQRGLKTVFDEAIRAVLCPQ
       :::::::.:..:::::::::::::.:.:: ::::::::::::::::::::::::::::: 
CCDS11 DDKDTIERLRDKKLAPITYPQGLAMAREIGSVKYLECSALTQRGLKTVFDEAIRAVLCPP
              130       140       150       160       170       180

              190  
pF1KB8 PTRQQKRACSLL
       :...  . :...
CCDS11 PVKKPGKKCTVF
              190  

>>CCDS222.1 CDC42 gene_id:998|Hs108|chr1                  (191 aa)
 initn: 954 init1: 919 opt: 925  Z-score: 1102.9  bits: 210.8 E(32554): 4.1e-55
Smith-Waterman score: 925; 69.3% identity (87.5% similar) in 192 aa overlap (1-192:1-191)

               10        20        30        40        50        60
pF1KB8 MQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDSKPVNLGLWDTAG
       ::.::::::::::::::::::::::: ::.::.:::::::...::. ..: .:::.::::
CCDS22 MQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAG
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB8 QEDYDRLRPLSYPQTDVFLICFSLVSPASYENVRAKWFPEVRHHCPSTPIILVGTKLDLR
       :::::::::::::::::::.:::.:::.:.:::. :: ::. ::::.::..::::..:::
CCDS22 QEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLR
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB8 DDKDTIEKLKEKKLAPITYPQGLALAKEIDSVKYLECSALTQRGLKTVFDEAIRAVLCPQ
       :: .::::: ..:  :::   .  ::... .:::.:::::::::::.:::::: :.: : 
CCDS22 DDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQRGLKNVFDEAILAALEP-
              130       140       150       160       170          

              190  
pF1KB8 PTRQQKRACSLL
       :  : :: : ..
CCDS22 PETQPKRKCCIF
     180       190 

>>CCDS221.1 CDC42 gene_id:998|Hs108|chr1                  (191 aa)
 initn: 939 init1: 904 opt: 916  Z-score: 1092.2  bits: 208.8 E(32554): 1.6e-54
Smith-Waterman score: 916; 68.8% identity (88.0% similar) in 192 aa overlap (1-192:1-191)

               10        20        30        40        50        60
pF1KB8 MQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDSKPVNLGLWDTAG
       ::.::::::::::::::::::::::: ::.::.:::::::...::. ..: .:::.::::
CCDS22 MQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAG
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB8 QEDYDRLRPLSYPQTDVFLICFSLVSPASYENVRAKWFPEVRHHCPSTPIILVGTKLDLR
       :::::::::::::::::::.:::.:::.:.:::. :: ::. ::::.::..::::..:::
CCDS22 QEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLR
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB8 DDKDTIEKLKEKKLAPITYPQGLALAKEIDSVKYLECSALTQRGLKTVFDEAIRAVLCPQ
       :: .::::: ..:  :::   .  ::... .:::.:::::::.:::.:::::: :.: : 
CCDS22 DDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAILAALEP-
              130       140       150       160       170          

              190  
pF1KB8 PTRQQKRACSLL
       :  ...: : ::
CCDS22 PEPKKSRRCVLL
     180       190 

>>CCDS7748.1 RHOG gene_id:391|Hs108|chr11                 (191 aa)
 initn: 941 init1: 900 opt: 913  Z-score: 1088.7  bits: 208.2 E(32554): 2.6e-54
Smith-Waterman score: 913; 71.4% identity (84.9% similar) in 192 aa overlap (1-192:1-191)

               10        20        30        40        50        60
pF1KB8 MQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDSKPVNLGLWDTAG
       ::.:::::::::::::::::: ::::::: ::::::::::::.  ::.. :::.::::::
CCDS77 MQSIKCVVVGDGAVGKTCLLICYTTNAFPKEYIPTVFDNYSAQSAVDGRTVNLNLWDTAG
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB8 QEDYDRLRPLSYPQTDVFLICFSLVSPASYENVRAKWFPEVRHHCPSTPIILVGTKLDLR
       ::.::::: ::::::.::.::::..:: :::::: :: ::: ::::..::.::::: :::
CCDS77 QEEYDRLRTLSYPQTNVFVICFSIASPPSYENVRHKWHPEVCHHCPDVPILLVGTKKDLR
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB8 DDKDTIEKLKEKKLAPITYPQGLALAKEIDSVKYLECSALTQRGLKTVFDEAIRAVLCPQ
        . ::...:::.  ::::  :: ::::.: .:.::::::: : :.: :: ::.:::: : 
CCDS77 AQPDTLRRLKEQGQAPITPQQGQALAKQIHAVRYLECSALQQDGVKEVFAEAVRAVLNPT
              130       140       150       160       170       180

              190  
pF1KB8 PTRQQKRACSLL
       : ..  :.: ::
CCDS77 PIKRG-RSCILL
               190 

>>CCDS33191.1 RHOQ gene_id:23433|Hs108|chr2               (205 aa)
 initn: 838 init1: 800 opt: 802  Z-score: 957.2  bits: 184.0 E(32554): 5.4e-47
Smith-Waterman score: 802; 62.0% identity (83.4% similar) in 187 aa overlap (4-190:10-196)

                     10        20        30        40        50    
pF1KB8       MQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDSKPVNLG
                .::::::::::::::::.::...::: ::.:::::.:...: : .:   ::
CCDS33 MAHGPGALMLKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVFDHYAVSVTVGGKQYLLG
               10        20        30        40        50        60

           60        70        80        90       100       110    
pF1KB8 LWDTAGQEDYDRLRPLSYPQTDVFLICFSLVSPASYENVRAKWFPEVRHHCPSTPIILVG
       :.:::::::::::::::::.:::::::::.:.:::..::. .: ::.... :..:..:.:
CCDS33 LYDTAGQEDYDRLRPLSYPMTDVFLICFSVVNPASFQNVKEEWVPELKEYAPNVPFLLIG
               70        80        90       100       110       120

          120       130       140       150       160       170    
pF1KB8 TKLDLRDDKDTIEKLKEKKLAPITYPQGLALAKEIDSVKYLECSALTQRGLKTVFDEAIR
       :..:::::  :. .:.. :  ::   ::  ::::: .  :.:::::::.:::::::::: 
CCDS33 TQIDLRDDPKTLARLNDMKEKPICVEQGQKLAKEIGACCYVECSALTQKGLKTVFDEAII
              130       140       150       160       170       180

          180       190         
pF1KB8 AVLCPQPTRQQKRACSLL       
       :.: :.    .::  :         
CCDS33 AILTPKKHTVKKRIGSRCINCCLIT
              190       200     

>>CCDS9757.1 RHOJ gene_id:57381|Hs108|chr14               (214 aa)
 initn: 793 init1: 753 opt: 766  Z-score: 914.4  bits: 176.1 E(32554): 1.3e-44
Smith-Waterman score: 766; 59.3% identity (82.0% similar) in 189 aa overlap (2-190:20-205)

                                 10        20        30        40  
pF1KB8                   MQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSA
                          . .::::::::::::::::.::...::: ::.:::::.:..
CCDS97 MNCKEGTDSSCGCRGNDEKKMLKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVFDHYAV
               10        20        30        40        50        60

             50        60        70        80        90       100  
pF1KB8 NVMVDSKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFLICFSLVSPASYENVRAKWFPEVR
       .: : .:   :::.::::::::..:::::::.:::::::::.:.::::.::. .: ::..
CCDS97 TVTVGGKQHLLGLYDTAGQEDYNQLRPLSYPNTDVFLICFSVVNPASYHNVQEEWVPELK
               70        80        90       100       110       120

            110       120       130       140       150       160  
pF1KB8 HHCPSTPIILVGTKLDLRDDKDTIEKLKEKKLAPITYPQGLALAKEIDSVKYLECSALTQ
          : .: .:.::..:::::  :. .:   :  :.:: .:. ::: : .  :::::::::
CCDS97 DCMPHVPYVLIGTQIDLRDDPKTLARLLYMKEKPLTYEHGVKLAKAIGAQCYLECSALTQ
              130       140       150       160       170       180

            170       180       190         
pF1KB8 RGLKTVFDEAIRAVLCPQPTRQQKRACSLL       
       .:::.:::::: ... :   ...:. ::         
CCDS97 KGLKAVFDEAILTIFHP---KKKKKRCSEGHSCCSII
              190          200       210    

>>CCDS5349.1 RAC1 gene_id:5879|Hs108|chr7                 (211 aa)
 initn: 713 init1: 713 opt: 719  Z-score: 859.0  bits: 165.8 E(32554): 1.6e-41
Smith-Waterman score: 1163; 83.9% identity (89.1% similar) in 211 aa overlap (1-192:1-211)

               10        20        30        40        50        60
pF1KB8 MQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDSKPVNLGLWDTAG
       :::::::::::::::::::::::::::::::::::::::::::::::.::::::::::::
CCDS53 MQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAG
               10        20        30        40        50        60

               70                           80        90       100 
pF1KB8 QEDYDRLRPLSYPQT-------------------DVFLICFSLVSPASYENVRAKWFPEV
       :::::::::::::::                   ::::::::::::::.:::::::.:::
CCDS53 QEDYDRLRPLSYPQTVGETYGKDITSRGKDKPIADVFLICFSLVSPASFENVRAKWYPEV
               70        80        90       100       110       120

             110       120       130       140       150       160 
pF1KB8 RHHCPSTPIILVGTKLDLRDDKDTIEKLKEKKLAPITYPQGLALAKEIDSVKYLECSALT
       :::::.:::::::::::::::::::::::::::.:::::::::.:::: .::::::::::
CCDS53 RHHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALT
              130       140       150       160       170       180

             170       180       190  
pF1KB8 QRGLKTVFDEAIRAVLCPQPTRQQKRACSLL
       :::::::::::::::::: :....:: : ::
CCDS53 QRGLKTVFDEAIRAVLCPPPVKKRKRKCLLL
              190       200       210 

>>CCDS1575.1 RHOU gene_id:58480|Hs108|chr1                (258 aa)
 initn: 723 init1: 705 opt: 710  Z-score: 847.2  bits: 163.9 E(32554): 7.2e-41
Smith-Waterman score: 710; 55.9% identity (80.1% similar) in 186 aa overlap (2-187:48-233)

                                            10        20        30 
pF1KB8                              MQAIKCVVVGDGAVGKTCLLISYTTNAFPGE
                                     ...:::.::::::::: :..:::::..: :
CCDS15 PVPPRRERGGRGGRGPGEPGGRGRAGGAEGRGVKCVLVGDGAVGKTSLVVSYTTNGYPTE
        20        30        40        50        60        70       

              40        50        60        70        80        90 
pF1KB8 YIPTVFDNYSANVMVDSKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFLICFSLVSPASYE
       ::::.:::.:: : ::..:: : : :::::...:.:::: : .::.::.:::.:::.:..
CCDS15 YIPTAFDNFSAVVSVDGRPVRLQLCDTAGQDEFDKLRPLCYTNTDIFLLCFSVVSPSSFQ
        80        90       100       110       120       130       

             100       110       120       130       140       150 
pF1KB8 NVRAKWFPEVRHHCPSTPIILVGTKLDLRDDKDTIEKLKEKKLAPITYPQGLALAKEIDS
       ::  :: ::.: :::..:::::::. :::.:  .. .: . :  :.    .   :.:: .
CCDS15 NVSEKWVPEIRCHCPKAPIILVGTQSDLREDVKVLIELDKCKEKPVPEEAAKLCAEEIKA
       140       150       160       170       180       190       

             160       170       180       190                     
pF1KB8 VKYLECSALTQRGLKTVFDEAIRAVLCPQPTRQQKRACSLL                   
       ..:.:::::::..:: ::: :: : .  . :.:: .                        
CCDS15 ASYIECSALTQKNLKEVFDAAIVAGIQYSDTQQQPKKSKSRTPDKMKNLSKSWWKKYCCF
       200       210       220       230       240       250       

CCDS15 V
        




192 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 13:08:10 2016 done: Fri Nov  4 13:08:11 2016
 Total Scan time:  2.000 Total Display time: -0.010

Function used was FASTA [36.3.4 Apr, 2011]
Inquiries or Suggestions ?
Send a message to flexiclone AT kazusagt.com