Result of FASTA (omim) for pF1KB8459
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB8459, 468 aa
  1>>>pF1KB8459 468 - 468 aa - 468 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 7.1066+/-0.000354; mu= 10.1095+/- 0.022
 mean_var=125.6016+/-24.843, 0's: 0 Z-trim(117.6): 9  B-trim: 0 in 0/56
 Lambda= 0.114440
 statistics sampled from 29738 (29747) to 29738 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.698), E-opt: 0.2 (0.349), width:  16
 Scan time: 10.640

The best scores are:                                      opt bits E(85289)
XP_011528135 (OMIM: 604646) PREDICTED: nuclear por ( 468) 3071 518.2 1.8e-146
XP_006724166 (OMIM: 604646) PREDICTED: nuclear por ( 468) 3071 518.2 1.8e-146
NP_009103 (OMIM: 604646) nuclear pore complex prot ( 468) 3071 518.2 1.8e-146
XP_005261371 (OMIM: 604646) PREDICTED: nuclear por ( 440) 2886 487.7 2.8e-137
XP_005261369 (OMIM: 604646) PREDICTED: nuclear por ( 440) 2886 487.7 2.8e-137
NP_705931 (OMIM: 604646) nuclear pore complex prot ( 440) 2886 487.7 2.8e-137
XP_006724167 (OMIM: 604646) PREDICTED: nuclear por ( 440) 2886 487.7 2.8e-137
XP_016884026 (OMIM: 604646) PREDICTED: nuclear por ( 440) 2886 487.7 2.8e-137
XP_016884027 (OMIM: 604646) PREDICTED: nuclear por ( 218) 1425 246.3 6.4e-65


>>XP_011528135 (OMIM: 604646) PREDICTED: nuclear pore co  (468 aa)
 initn: 3071 init1: 3071 opt: 3071  Z-score: 2750.4  bits: 518.2 E(85289): 1.8e-146
Smith-Waterman score: 3071; 100.0% identity (100.0% similar) in 468 aa overlap (1-468:1-468)

               10        20        30        40        50        60
pF1KB8 MAKRNAEKELTDRNWDQEDEAEEVGTFSMASEEVLKNRAIKKAKRRNVGFESDTGGAFKG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 MAKRNAEKELTDRNWDQEDEAEEVGTFSMASEEVLKNRAIKKAKRRNVGFESDTGGAFKG
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB8 FKGLVVPSGGGRFSGFGSGAGGKPLEGLSNGNNITSAPPFASAKAAADPKVAFGSLAANG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 FKGLVVPSGGGRFSGFGSGAGGKPLEGLSNGNNITSAPPFASAKAAADPKVAFGSLAANG
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB8 PTTLVDKVSNPKTNGDSQQPSSSGLASSKACVGNAYHKQLAALNCSVRDWIVKHVNTNPL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 PTTLVDKVSNPKTNGDSQQPSSSGLASSKACVGNAYHKQLAALNCSVRDWIVKHVNTNPL
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB8 CDLTPIFKDYEKYLANIEQQHGNSGRNSESESNKVAAETQSPSLFGSTKLQQESTFLFHG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 CDLTPIFKDYEKYLANIEQQHGNSGRNSESESNKVAAETQSPSLFGSTKLQQESTFLFHG
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB8 NKTEDTPDKKMEVASEKKTDPSSLGATSASFNFGKKVDSSVLGSLSSVPLTGFSFSPGNS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 NKTEDTPDKKMEVASEKKTDPSSLGATSASFNFGKKVDSSVLGSLSSVPLTGFSFSPGNS
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KB8 SLFGKDTTQSKPVSSPFPTKPLEGQAEGDSGECKGGDEEENDEPPKVVVTEVKEEDAFYS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 SLFGKDTTQSKPVSSPFPTKPLEGQAEGDSGECKGGDEEENDEPPKVVVTEVKEEDAFYS
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KB8 KKCKLFYKKDNEFKEKGIGTLHLKPTANQKTQLLVRADTNLGNILLNVLIPPNMPCTRTG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 KKCKLFYKKDNEFKEKGIGTLHLKPTANQKTQLLVRADTNLGNILLNVLIPPNMPCTRTG
              370       380       390       400       410       420

              430       440       450       460        
pF1KB8 KNNVLIVCVPNPPIDEKNATMPVTMLIRVKTSEDADELHKILLEKKDA
       ::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 KNNVLIVCVPNPPIDEKNATMPVTMLIRVKTSEDADELHKILLEKKDA
              430       440       450       460        

>>XP_006724166 (OMIM: 604646) PREDICTED: nuclear pore co  (468 aa)
 initn: 3071 init1: 3071 opt: 3071  Z-score: 2750.4  bits: 518.2 E(85289): 1.8e-146
Smith-Waterman score: 3071; 100.0% identity (100.0% similar) in 468 aa overlap (1-468:1-468)

               10        20        30        40        50        60
pF1KB8 MAKRNAEKELTDRNWDQEDEAEEVGTFSMASEEVLKNRAIKKAKRRNVGFESDTGGAFKG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 MAKRNAEKELTDRNWDQEDEAEEVGTFSMASEEVLKNRAIKKAKRRNVGFESDTGGAFKG
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB8 FKGLVVPSGGGRFSGFGSGAGGKPLEGLSNGNNITSAPPFASAKAAADPKVAFGSLAANG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 FKGLVVPSGGGRFSGFGSGAGGKPLEGLSNGNNITSAPPFASAKAAADPKVAFGSLAANG
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB8 PTTLVDKVSNPKTNGDSQQPSSSGLASSKACVGNAYHKQLAALNCSVRDWIVKHVNTNPL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 PTTLVDKVSNPKTNGDSQQPSSSGLASSKACVGNAYHKQLAALNCSVRDWIVKHVNTNPL
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB8 CDLTPIFKDYEKYLANIEQQHGNSGRNSESESNKVAAETQSPSLFGSTKLQQESTFLFHG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 CDLTPIFKDYEKYLANIEQQHGNSGRNSESESNKVAAETQSPSLFGSTKLQQESTFLFHG
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB8 NKTEDTPDKKMEVASEKKTDPSSLGATSASFNFGKKVDSSVLGSLSSVPLTGFSFSPGNS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 NKTEDTPDKKMEVASEKKTDPSSLGATSASFNFGKKVDSSVLGSLSSVPLTGFSFSPGNS
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KB8 SLFGKDTTQSKPVSSPFPTKPLEGQAEGDSGECKGGDEEENDEPPKVVVTEVKEEDAFYS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 SLFGKDTTQSKPVSSPFPTKPLEGQAEGDSGECKGGDEEENDEPPKVVVTEVKEEDAFYS
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KB8 KKCKLFYKKDNEFKEKGIGTLHLKPTANQKTQLLVRADTNLGNILLNVLIPPNMPCTRTG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 KKCKLFYKKDNEFKEKGIGTLHLKPTANQKTQLLVRADTNLGNILLNVLIPPNMPCTRTG
              370       380       390       400       410       420

              430       440       450       460        
pF1KB8 KNNVLIVCVPNPPIDEKNATMPVTMLIRVKTSEDADELHKILLEKKDA
       ::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 KNNVLIVCVPNPPIDEKNATMPVTMLIRVKTSEDADELHKILLEKKDA
              430       440       450       460        

>>NP_009103 (OMIM: 604646) nuclear pore complex protein   (468 aa)
 initn: 3071 init1: 3071 opt: 3071  Z-score: 2750.4  bits: 518.2 E(85289): 1.8e-146
Smith-Waterman score: 3071; 100.0% identity (100.0% similar) in 468 aa overlap (1-468:1-468)

               10        20        30        40        50        60
pF1KB8 MAKRNAEKELTDRNWDQEDEAEEVGTFSMASEEVLKNRAIKKAKRRNVGFESDTGGAFKG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_009 MAKRNAEKELTDRNWDQEDEAEEVGTFSMASEEVLKNRAIKKAKRRNVGFESDTGGAFKG
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB8 FKGLVVPSGGGRFSGFGSGAGGKPLEGLSNGNNITSAPPFASAKAAADPKVAFGSLAANG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_009 FKGLVVPSGGGRFSGFGSGAGGKPLEGLSNGNNITSAPPFASAKAAADPKVAFGSLAANG
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB8 PTTLVDKVSNPKTNGDSQQPSSSGLASSKACVGNAYHKQLAALNCSVRDWIVKHVNTNPL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_009 PTTLVDKVSNPKTNGDSQQPSSSGLASSKACVGNAYHKQLAALNCSVRDWIVKHVNTNPL
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB8 CDLTPIFKDYEKYLANIEQQHGNSGRNSESESNKVAAETQSPSLFGSTKLQQESTFLFHG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_009 CDLTPIFKDYEKYLANIEQQHGNSGRNSESESNKVAAETQSPSLFGSTKLQQESTFLFHG
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB8 NKTEDTPDKKMEVASEKKTDPSSLGATSASFNFGKKVDSSVLGSLSSVPLTGFSFSPGNS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_009 NKTEDTPDKKMEVASEKKTDPSSLGATSASFNFGKKVDSSVLGSLSSVPLTGFSFSPGNS
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KB8 SLFGKDTTQSKPVSSPFPTKPLEGQAEGDSGECKGGDEEENDEPPKVVVTEVKEEDAFYS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_009 SLFGKDTTQSKPVSSPFPTKPLEGQAEGDSGECKGGDEEENDEPPKVVVTEVKEEDAFYS
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KB8 KKCKLFYKKDNEFKEKGIGTLHLKPTANQKTQLLVRADTNLGNILLNVLIPPNMPCTRTG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_009 KKCKLFYKKDNEFKEKGIGTLHLKPTANQKTQLLVRADTNLGNILLNVLIPPNMPCTRTG
              370       380       390       400       410       420

              430       440       450       460        
pF1KB8 KNNVLIVCVPNPPIDEKNATMPVTMLIRVKTSEDADELHKILLEKKDA
       ::::::::::::::::::::::::::::::::::::::::::::::::
NP_009 KNNVLIVCVPNPPIDEKNATMPVTMLIRVKTSEDADELHKILLEKKDA
              430       440       450       460        

>>XP_005261371 (OMIM: 604646) PREDICTED: nuclear pore co  (440 aa)
 initn: 2886 init1: 2886 opt: 2886  Z-score: 2585.7  bits: 487.7 E(85289): 2.8e-137
Smith-Waterman score: 2886; 100.0% identity (100.0% similar) in 440 aa overlap (29-468:1-440)

               10        20        30        40        50        60
pF1KB8 MAKRNAEKELTDRNWDQEDEAEEVGTFSMASEEVLKNRAIKKAKRRNVGFESDTGGAFKG
                                   ::::::::::::::::::::::::::::::::
XP_005                             MASEEVLKNRAIKKAKRRNVGFESDTGGAFKG
                                           10        20        30  

               70        80        90       100       110       120
pF1KB8 FKGLVVPSGGGRFSGFGSGAGGKPLEGLSNGNNITSAPPFASAKAAADPKVAFGSLAANG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 FKGLVVPSGGGRFSGFGSGAGGKPLEGLSNGNNITSAPPFASAKAAADPKVAFGSLAANG
             40        50        60        70        80        90  

              130       140       150       160       170       180
pF1KB8 PTTLVDKVSNPKTNGDSQQPSSSGLASSKACVGNAYHKQLAALNCSVRDWIVKHVNTNPL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 PTTLVDKVSNPKTNGDSQQPSSSGLASSKACVGNAYHKQLAALNCSVRDWIVKHVNTNPL
            100       110       120       130       140       150  

              190       200       210       220       230       240
pF1KB8 CDLTPIFKDYEKYLANIEQQHGNSGRNSESESNKVAAETQSPSLFGSTKLQQESTFLFHG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 CDLTPIFKDYEKYLANIEQQHGNSGRNSESESNKVAAETQSPSLFGSTKLQQESTFLFHG
            160       170       180       190       200       210  

              250       260       270       280       290       300
pF1KB8 NKTEDTPDKKMEVASEKKTDPSSLGATSASFNFGKKVDSSVLGSLSSVPLTGFSFSPGNS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 NKTEDTPDKKMEVASEKKTDPSSLGATSASFNFGKKVDSSVLGSLSSVPLTGFSFSPGNS
            220       230       240       250       260       270  

              310       320       330       340       350       360
pF1KB8 SLFGKDTTQSKPVSSPFPTKPLEGQAEGDSGECKGGDEEENDEPPKVVVTEVKEEDAFYS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 SLFGKDTTQSKPVSSPFPTKPLEGQAEGDSGECKGGDEEENDEPPKVVVTEVKEEDAFYS
            280       290       300       310       320       330  

              370       380       390       400       410       420
pF1KB8 KKCKLFYKKDNEFKEKGIGTLHLKPTANQKTQLLVRADTNLGNILLNVLIPPNMPCTRTG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 KKCKLFYKKDNEFKEKGIGTLHLKPTANQKTQLLVRADTNLGNILLNVLIPPNMPCTRTG
            340       350       360       370       380       390  

              430       440       450       460        
pF1KB8 KNNVLIVCVPNPPIDEKNATMPVTMLIRVKTSEDADELHKILLEKKDA
       ::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 KNNVLIVCVPNPPIDEKNATMPVTMLIRVKTSEDADELHKILLEKKDA
            400       410       420       430       440

>>XP_005261369 (OMIM: 604646) PREDICTED: nuclear pore co  (440 aa)
 initn: 2886 init1: 2886 opt: 2886  Z-score: 2585.7  bits: 487.7 E(85289): 2.8e-137
Smith-Waterman score: 2886; 100.0% identity (100.0% similar) in 440 aa overlap (29-468:1-440)

               10        20        30        40        50        60
pF1KB8 MAKRNAEKELTDRNWDQEDEAEEVGTFSMASEEVLKNRAIKKAKRRNVGFESDTGGAFKG
                                   ::::::::::::::::::::::::::::::::
XP_005                             MASEEVLKNRAIKKAKRRNVGFESDTGGAFKG
                                           10        20        30  

               70        80        90       100       110       120
pF1KB8 FKGLVVPSGGGRFSGFGSGAGGKPLEGLSNGNNITSAPPFASAKAAADPKVAFGSLAANG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 FKGLVVPSGGGRFSGFGSGAGGKPLEGLSNGNNITSAPPFASAKAAADPKVAFGSLAANG
             40        50        60        70        80        90  

              130       140       150       160       170       180
pF1KB8 PTTLVDKVSNPKTNGDSQQPSSSGLASSKACVGNAYHKQLAALNCSVRDWIVKHVNTNPL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 PTTLVDKVSNPKTNGDSQQPSSSGLASSKACVGNAYHKQLAALNCSVRDWIVKHVNTNPL
            100       110       120       130       140       150  

              190       200       210       220       230       240
pF1KB8 CDLTPIFKDYEKYLANIEQQHGNSGRNSESESNKVAAETQSPSLFGSTKLQQESTFLFHG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 CDLTPIFKDYEKYLANIEQQHGNSGRNSESESNKVAAETQSPSLFGSTKLQQESTFLFHG
            160       170       180       190       200       210  

              250       260       270       280       290       300
pF1KB8 NKTEDTPDKKMEVASEKKTDPSSLGATSASFNFGKKVDSSVLGSLSSVPLTGFSFSPGNS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 NKTEDTPDKKMEVASEKKTDPSSLGATSASFNFGKKVDSSVLGSLSSVPLTGFSFSPGNS
            220       230       240       250       260       270  

              310       320       330       340       350       360
pF1KB8 SLFGKDTTQSKPVSSPFPTKPLEGQAEGDSGECKGGDEEENDEPPKVVVTEVKEEDAFYS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 SLFGKDTTQSKPVSSPFPTKPLEGQAEGDSGECKGGDEEENDEPPKVVVTEVKEEDAFYS
            280       290       300       310       320       330  

              370       380       390       400       410       420
pF1KB8 KKCKLFYKKDNEFKEKGIGTLHLKPTANQKTQLLVRADTNLGNILLNVLIPPNMPCTRTG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 KKCKLFYKKDNEFKEKGIGTLHLKPTANQKTQLLVRADTNLGNILLNVLIPPNMPCTRTG
            340       350       360       370       380       390  

              430       440       450       460        
pF1KB8 KNNVLIVCVPNPPIDEKNATMPVTMLIRVKTSEDADELHKILLEKKDA
       ::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 KNNVLIVCVPNPPIDEKNATMPVTMLIRVKTSEDADELHKILLEKKDA
            400       410       420       430       440

>>NP_705931 (OMIM: 604646) nuclear pore complex protein   (440 aa)
 initn: 2886 init1: 2886 opt: 2886  Z-score: 2585.7  bits: 487.7 E(85289): 2.8e-137
Smith-Waterman score: 2886; 100.0% identity (100.0% similar) in 440 aa overlap (29-468:1-440)

               10        20        30        40        50        60
pF1KB8 MAKRNAEKELTDRNWDQEDEAEEVGTFSMASEEVLKNRAIKKAKRRNVGFESDTGGAFKG
                                   ::::::::::::::::::::::::::::::::
NP_705                             MASEEVLKNRAIKKAKRRNVGFESDTGGAFKG
                                           10        20        30  

               70        80        90       100       110       120
pF1KB8 FKGLVVPSGGGRFSGFGSGAGGKPLEGLSNGNNITSAPPFASAKAAADPKVAFGSLAANG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_705 FKGLVVPSGGGRFSGFGSGAGGKPLEGLSNGNNITSAPPFASAKAAADPKVAFGSLAANG
             40        50        60        70        80        90  

              130       140       150       160       170       180
pF1KB8 PTTLVDKVSNPKTNGDSQQPSSSGLASSKACVGNAYHKQLAALNCSVRDWIVKHVNTNPL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_705 PTTLVDKVSNPKTNGDSQQPSSSGLASSKACVGNAYHKQLAALNCSVRDWIVKHVNTNPL
            100       110       120       130       140       150  

              190       200       210       220       230       240
pF1KB8 CDLTPIFKDYEKYLANIEQQHGNSGRNSESESNKVAAETQSPSLFGSTKLQQESTFLFHG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_705 CDLTPIFKDYEKYLANIEQQHGNSGRNSESESNKVAAETQSPSLFGSTKLQQESTFLFHG
            160       170       180       190       200       210  

              250       260       270       280       290       300
pF1KB8 NKTEDTPDKKMEVASEKKTDPSSLGATSASFNFGKKVDSSVLGSLSSVPLTGFSFSPGNS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_705 NKTEDTPDKKMEVASEKKTDPSSLGATSASFNFGKKVDSSVLGSLSSVPLTGFSFSPGNS
            220       230       240       250       260       270  

              310       320       330       340       350       360
pF1KB8 SLFGKDTTQSKPVSSPFPTKPLEGQAEGDSGECKGGDEEENDEPPKVVVTEVKEEDAFYS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_705 SLFGKDTTQSKPVSSPFPTKPLEGQAEGDSGECKGGDEEENDEPPKVVVTEVKEEDAFYS
            280       290       300       310       320       330  

              370       380       390       400       410       420
pF1KB8 KKCKLFYKKDNEFKEKGIGTLHLKPTANQKTQLLVRADTNLGNILLNVLIPPNMPCTRTG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_705 KKCKLFYKKDNEFKEKGIGTLHLKPTANQKTQLLVRADTNLGNILLNVLIPPNMPCTRTG
            340       350       360       370       380       390  

              430       440       450       460        
pF1KB8 KNNVLIVCVPNPPIDEKNATMPVTMLIRVKTSEDADELHKILLEKKDA
       ::::::::::::::::::::::::::::::::::::::::::::::::
NP_705 KNNVLIVCVPNPPIDEKNATMPVTMLIRVKTSEDADELHKILLEKKDA
            400       410       420       430       440

>>XP_006724167 (OMIM: 604646) PREDICTED: nuclear pore co  (440 aa)
 initn: 2886 init1: 2886 opt: 2886  Z-score: 2585.7  bits: 487.7 E(85289): 2.8e-137
Smith-Waterman score: 2886; 100.0% identity (100.0% similar) in 440 aa overlap (29-468:1-440)

               10        20        30        40        50        60
pF1KB8 MAKRNAEKELTDRNWDQEDEAEEVGTFSMASEEVLKNRAIKKAKRRNVGFESDTGGAFKG
                                   ::::::::::::::::::::::::::::::::
XP_006                             MASEEVLKNRAIKKAKRRNVGFESDTGGAFKG
                                           10        20        30  

               70        80        90       100       110       120
pF1KB8 FKGLVVPSGGGRFSGFGSGAGGKPLEGLSNGNNITSAPPFASAKAAADPKVAFGSLAANG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 FKGLVVPSGGGRFSGFGSGAGGKPLEGLSNGNNITSAPPFASAKAAADPKVAFGSLAANG
             40        50        60        70        80        90  

              130       140       150       160       170       180
pF1KB8 PTTLVDKVSNPKTNGDSQQPSSSGLASSKACVGNAYHKQLAALNCSVRDWIVKHVNTNPL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 PTTLVDKVSNPKTNGDSQQPSSSGLASSKACVGNAYHKQLAALNCSVRDWIVKHVNTNPL
            100       110       120       130       140       150  

              190       200       210       220       230       240
pF1KB8 CDLTPIFKDYEKYLANIEQQHGNSGRNSESESNKVAAETQSPSLFGSTKLQQESTFLFHG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 CDLTPIFKDYEKYLANIEQQHGNSGRNSESESNKVAAETQSPSLFGSTKLQQESTFLFHG
            160       170       180       190       200       210  

              250       260       270       280       290       300
pF1KB8 NKTEDTPDKKMEVASEKKTDPSSLGATSASFNFGKKVDSSVLGSLSSVPLTGFSFSPGNS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 NKTEDTPDKKMEVASEKKTDPSSLGATSASFNFGKKVDSSVLGSLSSVPLTGFSFSPGNS
            220       230       240       250       260       270  

              310       320       330       340       350       360
pF1KB8 SLFGKDTTQSKPVSSPFPTKPLEGQAEGDSGECKGGDEEENDEPPKVVVTEVKEEDAFYS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 SLFGKDTTQSKPVSSPFPTKPLEGQAEGDSGECKGGDEEENDEPPKVVVTEVKEEDAFYS
            280       290       300       310       320       330  

              370       380       390       400       410       420
pF1KB8 KKCKLFYKKDNEFKEKGIGTLHLKPTANQKTQLLVRADTNLGNILLNVLIPPNMPCTRTG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 KKCKLFYKKDNEFKEKGIGTLHLKPTANQKTQLLVRADTNLGNILLNVLIPPNMPCTRTG
            340       350       360       370       380       390  

              430       440       450       460        
pF1KB8 KNNVLIVCVPNPPIDEKNATMPVTMLIRVKTSEDADELHKILLEKKDA
       ::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 KNNVLIVCVPNPPIDEKNATMPVTMLIRVKTSEDADELHKILLEKKDA
            400       410       420       430       440

>>XP_016884026 (OMIM: 604646) PREDICTED: nuclear pore co  (440 aa)
 initn: 2886 init1: 2886 opt: 2886  Z-score: 2585.7  bits: 487.7 E(85289): 2.8e-137
Smith-Waterman score: 2886; 100.0% identity (100.0% similar) in 440 aa overlap (29-468:1-440)

               10        20        30        40        50        60
pF1KB8 MAKRNAEKELTDRNWDQEDEAEEVGTFSMASEEVLKNRAIKKAKRRNVGFESDTGGAFKG
                                   ::::::::::::::::::::::::::::::::
XP_016                             MASEEVLKNRAIKKAKRRNVGFESDTGGAFKG
                                           10        20        30  

               70        80        90       100       110       120
pF1KB8 FKGLVVPSGGGRFSGFGSGAGGKPLEGLSNGNNITSAPPFASAKAAADPKVAFGSLAANG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 FKGLVVPSGGGRFSGFGSGAGGKPLEGLSNGNNITSAPPFASAKAAADPKVAFGSLAANG
             40        50        60        70        80        90  

              130       140       150       160       170       180
pF1KB8 PTTLVDKVSNPKTNGDSQQPSSSGLASSKACVGNAYHKQLAALNCSVRDWIVKHVNTNPL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 PTTLVDKVSNPKTNGDSQQPSSSGLASSKACVGNAYHKQLAALNCSVRDWIVKHVNTNPL
            100       110       120       130       140       150  

              190       200       210       220       230       240
pF1KB8 CDLTPIFKDYEKYLANIEQQHGNSGRNSESESNKVAAETQSPSLFGSTKLQQESTFLFHG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 CDLTPIFKDYEKYLANIEQQHGNSGRNSESESNKVAAETQSPSLFGSTKLQQESTFLFHG
            160       170       180       190       200       210  

              250       260       270       280       290       300
pF1KB8 NKTEDTPDKKMEVASEKKTDPSSLGATSASFNFGKKVDSSVLGSLSSVPLTGFSFSPGNS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 NKTEDTPDKKMEVASEKKTDPSSLGATSASFNFGKKVDSSVLGSLSSVPLTGFSFSPGNS
            220       230       240       250       260       270  

              310       320       330       340       350       360
pF1KB8 SLFGKDTTQSKPVSSPFPTKPLEGQAEGDSGECKGGDEEENDEPPKVVVTEVKEEDAFYS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 SLFGKDTTQSKPVSSPFPTKPLEGQAEGDSGECKGGDEEENDEPPKVVVTEVKEEDAFYS
            280       290       300       310       320       330  

              370       380       390       400       410       420
pF1KB8 KKCKLFYKKDNEFKEKGIGTLHLKPTANQKTQLLVRADTNLGNILLNVLIPPNMPCTRTG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 KKCKLFYKKDNEFKEKGIGTLHLKPTANQKTQLLVRADTNLGNILLNVLIPPNMPCTRTG
            340       350       360       370       380       390  

              430       440       450       460        
pF1KB8 KNNVLIVCVPNPPIDEKNATMPVTMLIRVKTSEDADELHKILLEKKDA
       ::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 KNNVLIVCVPNPPIDEKNATMPVTMLIRVKTSEDADELHKILLEKKDA
            400       410       420       430       440

>>XP_016884027 (OMIM: 604646) PREDICTED: nuclear pore co  (218 aa)
 initn: 1425 init1: 1425 opt: 1425  Z-score: 1286.6  bits: 246.3 E(85289): 6.4e-65
Smith-Waterman score: 1425; 100.0% identity (100.0% similar) in 218 aa overlap (251-468:1-218)

              230       240       250       260       270       280
pF1KB8 SPSLFGSTKLQQESTFLFHGNKTEDTPDKKMEVASEKKTDPSSLGATSASFNFGKKVDSS
                                     ::::::::::::::::::::::::::::::
XP_016                               MEVASEKKTDPSSLGATSASFNFGKKVDSS
                                             10        20        30

              290       300       310       320       330       340
pF1KB8 VLGSLSSVPLTGFSFSPGNSSLFGKDTTQSKPVSSPFPTKPLEGQAEGDSGECKGGDEEE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 VLGSLSSVPLTGFSFSPGNSSLFGKDTTQSKPVSSPFPTKPLEGQAEGDSGECKGGDEEE
               40        50        60        70        80        90

              350       360       370       380       390       400
pF1KB8 NDEPPKVVVTEVKEEDAFYSKKCKLFYKKDNEFKEKGIGTLHLKPTANQKTQLLVRADTN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 NDEPPKVVVTEVKEEDAFYSKKCKLFYKKDNEFKEKGIGTLHLKPTANQKTQLLVRADTN
              100       110       120       130       140       150

              410       420       430       440       450       460
pF1KB8 LGNILLNVLIPPNMPCTRTGKNNVLIVCVPNPPIDEKNATMPVTMLIRVKTSEDADELHK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 LGNILLNVLIPPNMPCTRTGKNNVLIVCVPNPPIDEKNATMPVTMLIRVKTSEDADELHK
              160       170       180       190       200       210

               
pF1KB8 ILLEKKDA
       ::::::::
XP_016 ILLEKKDA
               




468 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 13:06:28 2016 done: Fri Nov  4 13:06:29 2016
 Total Scan time: 10.640 Total Display time:  0.080

Function used was FASTA [36.3.4 Apr, 2011]
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