Result of FASTA (ccds) for pF1KB8403
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB8403, 715 aa
  1>>>pF1KB8403 715 - 715 aa - 715 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 6.5560+/-0.00103; mu= 14.1076+/- 0.062
 mean_var=90.9061+/-17.568, 0's: 0 Z-trim(105.2): 13  B-trim: 0 in 0/51
 Lambda= 0.134517
 statistics sampled from 8297 (8304) to 8297 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.627), E-opt: 0.2 (0.255), width:  16
 Scan time:  3.000

The best scores are:                                      opt bits E(32554)
CCDS11954.2 POLI gene_id:11201|Hs108|chr18         ( 740) 4692 921.2       0
CCDS4030.1 POLK gene_id:51426|Hs108|chr5           ( 870)  317 72.2 3.7e-12


>>CCDS11954.2 POLI gene_id:11201|Hs108|chr18              (740 aa)
 initn: 4692 init1: 4692 opt: 4692  Z-score: 4921.5  bits: 921.2 E(32554):    0
Smith-Waterman score: 4692; 99.6% identity (99.9% similar) in 715 aa overlap (1-715:26-740)

                                        10        20        30     
pF1KB8                          MELADVGAAASSQGVHDQVLPTPNASSRVIVHVDL
                                :::::::::::::::::::::::::::::::::::
CCDS11 MEKLGVEPEEEGGGDDDEEDAEAWAMELADVGAAASSQGVHDQVLPTPNASSRVIVHVDL
               10        20        30        40        50        60

          40        50        60        70        80        90     
pF1KB8 DCFYAQVEMISNPELKDKPLGVQQKYLVVTCNYEARKLGVKKLMNVRDAKEKCPQLVLVN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 DCFYAQVEMISNPELKDKPLGVQQKYLVVTCNYEARKLGVKKLMNVRDAKEKCPQLVLVN
               70        80        90       100       110       120

         100       110       120       130       140       150     
pF1KB8 GEDLTRYREMSYKVTELLEEFSPVVERLGFDENFVDLTEMVEKRLQQLQSDELSAVTVSG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 GEDLTRYREMSYKVTELLEEFSPVVERLGFDENFVDLTEMVEKRLQQLQSDELSAVTVSG
              130       140       150       160       170       180

         160       170       180       190       200       210     
pF1KB8 HVYNNQSINLLDVLHIRLLVGSQIAAEMREAMYNQLGLTGCAGVASNKLLAKLVSGVFKP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 HVYNNQSINLLDVLHIRLLVGSQIAAEMREAMYNQLGLTGCAGVASNKLLAKLVSGVFKP
              190       200       210       220       230       240

         220       230       240       250       260       270     
pF1KB8 NQQTVLLPESCQHLIHSLNHIKEIPGIGYKTAKCLEALGINSVRDLQTFSPKILEKELGI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 NQQTVLLPESCQHLIHSLNHIKEIPGIGYKTAKCLEALGINSVRDLQTFSPKILEKELGI
              250       260       270       280       290       300

         280       290       300       310       320       330     
pF1KB8 SVAQRIQKLSFGEDNSPVILSGPPQSFSEEDSFKKCTSEVEAKNKIEELLASLLNRVCQD
       ::::::::::::::::::::::::::::::::::::.:::::::::::::::::::::::
CCDS11 SVAQRIQKLSFGEDNSPVILSGPPQSFSEEDSFKKCSSEVEAKNKIEELLASLLNRVCQD
              310       320       330       340       350       360

         340       350       360       370       380       390     
pF1KB8 GRKPHTVRLIIRRYSSEKHYGRESRQCPIPSHVIQKLGTGNYDVMTPMVDILMKLFRNMV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 GRKPHTVRLIIRRYSSEKHYGRESRQCPIPSHVIQKLGTGNYDVMTPMVDILMKLFRNMV
              370       380       390       400       410       420

         400       410       420       430       440       450     
pF1KB8 NVKMPFHLTLLSVCFCNLKALNTAKKGLIDYYLMPSLSTTSRSGKHSFKMKDTHMEDFPK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 NVKMPFHLTLLSVCFCNLKALNTAKKGLIDYYLMPSLSTTSRSGKHSFKMKDTHMEDFPK
              430       440       450       460       470       480

         460       470       480       490       500       510     
pF1KB8 DKETNRDFLPSGRIESTRTRESPLDTTNFSKEKDINEFPLCSLPEGVDQEVSKQLPVDIQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::: ::::::::
CCDS11 DKETNRDFLPSGRIESTRTRESPLDTTNFSKEKDINEFPLCSLPEGVDQEVFKQLPVDIQ
              490       500       510       520       530       540

         520       530       540       550       560       570     
pF1KB8 EEILSGKSREKFQGKGSVSCPLHASRGVLSFFSKKQMQDIPINPRDHLSSSKQVSSVSPC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 EEILSGKSREKFQGKGSVSCPLHASRGVLSFFSKKQMQDIPINPRDHLSSSKQVSSVSPC
              550       560       570       580       590       600

         580       590       600       610       620       630     
pF1KB8 EPGTSGFNSSSSSYMSSQKDYSYYLDNRLKDERISQGPKEPQGFHFTNSNPAVSAFHSFP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 EPGTSGFNSSSSSYMSSQKDYSYYLDNRLKDERISQGPKEPQGFHFTNSNPAVSAFHSFP
              610       620       630       640       650       660

         640       650       660       670       680       690     
pF1KB8 NLQSEQLFSRNHTTDSHKQTVATDSHEGLTENREPDSVDEKITFPSDIDPQVFYELPEAV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 NLQSEQLFSRNHTTDSHKQTVATDSHEGLTENREPDSVDEKITFPSDIDPQVFYELPEAV
              670       680       690       700       710       720

         700       710     
pF1KB8 QKELLAEWKRTGSDFHIGHK
       ::::::::::.:::::::::
CCDS11 QKELLAEWKRAGSDFHIGHK
              730       740

>>CCDS4030.1 POLK gene_id:51426|Hs108|chr5                (870 aa)
 initn: 358 init1: 237 opt: 317  Z-score: 331.8  bits: 72.2 E(32554): 3.7e-12
Smith-Waterman score: 436; 23.8% identity (53.0% similar) in 677 aa overlap (27-636:100-753)

                   10        20        30        40        50      
pF1KB8     MELADVGAAASSQGVHDQVLPTPNASSRVIVHVDLDCFYAQVEMISNPELKDKPLG
                                     : .:::.:.: ::: ::: .::::::::..
CCDS40 QKAQITSQQLRKAQLQVDRFAMELEQSRNLSNTIVHIDMDAFYAAVEMRDNPELKDKPIA
      70        80        90       100       110       120         

         60        70        80        90       100       110      
pF1KB8 VQQKYLVVTCNYEARKLGVKKLMNVRDAKEKCPQLVLVNGEDLTRYREMSYKVTELLEEF
       : .  .. : ::.::..::.  :    ::. ::::..:   .. .:: .: .: :.: ..
CCDS40 VGSMSMLSTSNYHARRFGVRAAMPGFIAKRLCPQLIIVP-PNFDKYRAVSKEVKEILADY
     130       140       150       160        170       180        

        120       130       140       150       160                
pF1KB8 SPVVERLGFDENFVDLTEMVEKRLQQLQSDELSAVTVSGHVYNN---QSINLLD------
       .:    ...:: ....:. .:.: .  .. .   . ... : :.   . .: :.      
CCDS40 DPNFMAMSLDEAYLNITKHLEERQNWPEDKRRYFIKMGSSVENDNPGKEVNKLSEHERSI
      190       200       210       220       230       240        

                                     170          180       190    
pF1KB8 ------------------------------VLHIRLLVGS---QIAAEMREAMYNQLGLT
                                     .:.  .. :.   ... :.:  . ..  ::
CCDS40 SPLLFEESPSDVQPPGDPFQVNFEEQNNPQILQNSVVFGTSAQEVVKEIRFRIEQKTTLT
      250       260       270       280       290       300        

          200       210       220         230       240       250  
pF1KB8 GCAGVASNKLLAKLVSGVFKPNQQTVLLP--ESCQHLIHSLNHIKEIPGIGYKTAKCLEA
       . ::.: : .:::. :   ::: :  .::  .. . .:..:  :... :::  : : :.:
CCDS40 ASAGIAPNTMLAKVCSDKNKPNGQYQILPNRQAVMDFIKDLP-IRKVSGIGKVTEKMLKA
      310       320       330       340       350        360       

            260       270        280       290       300       310 
pF1KB8 LGINSVRDLQTFSPKILEKELGISVA-QRIQKLSFGEDNSPVILSGPPQSFSEEDSFKKC
       ::: .  .:  .. . : . :   .. . . ..:.:  .. .  .:  .:.: : .:.. 
CCDS40 LGIITCTEL--YQQRALLSLLFSETSWHYFLHISLGLGSTHLTRDGERKSMSVERTFSEI
       370         380       390       400       410       420     

             320       330       340       350       360           
pF1KB8 TSEVEAKNKIEELLASLLNRVCQDGRKPHTVRLIIRRYSSEKHYGRESRQCPIPSH----
       ..  :  .  .:: . : . . ..  : .:: . ..  . : .  : :    . :     
CCDS40 NKAEEQYSLCQELCSELAQDLQKERLKGRTVTIKLKNVNFEVKT-RASTVSSVVSTAEEI
         430       440       450       460        470       480    

         370       380             390       400       410         
pF1KB8 --VIQKLGTGNYDVMTP------MVDILMKLFRNMVNVKMPFHLTLLSVCFCNLKALN--
         . ..:   . :.  :      .. . .. : :  . :   . ....    . .::.  
CCDS40 FAIAKELLKTEIDADFPHPLRLRLMGVRISSFPNEEDRKHQ-QRSIIGFLQAGNQALSAT
          490       500       510       520        530       540   

         420       430         440       450       460       470   
pF1KB8 --TAKKGLIDYYLMPSLSTTSRS--GKHSFKMKDTHMEDFPKDKETNRDFLPSGRIESTR
         : .:   : .. :   . ..:   :.  . : .:.. :  .  ....:  :  ..  .
CCDS40 ECTLEKTDKDKFVKPLEMSHKKSFFDKKRSERKWSHQDTFKCEAVNKQSFQTSQPFQVLK
           550       560       570       580       590       600   

            480       490       500       510       520            
pF1KB8 TRESP-LDTTNFSKEKDINEFPLCSLPEGVDQEVSKQLPVDIQEEILSGKS-REKFQ--G
        . .  :. .. : . .:   :.:   .:  .  . .  ::   : :.: :  :.:.  .
CCDS40 KKMNENLEISENSDDCQILTCPVCFRAQGCISLEALNKHVD---ECLDGPSISENFKMFS
           610       620       630       640          650       660

     530       540       550       560       570       580         
pF1KB8 KGSVSCPLHASRGVLSFFSKKQMQDIPINPRDHLSSSKQVSSVSPCEPGTSGFNSSSSSY
        . ::     ..  .   :  . ::   .:.      :..:::. :   .. ...::.. 
CCDS40 CSHVSATKVNKKENVPASSLCEKQDYEAHPK-----IKEISSVD-CIALVDTIDNSSKA-
              670       680       690             700       710    

     590       600       610       620       630       640         
pF1KB8 MSSQKDYSYYLDNRLKDERISQGPKEPQGFHFTNSNPAVSAFHSFPNLQSEQLFSRNHTT
            .    :.:. . :. :. :.  ..:.. . .   :.  :. :             
CCDS40 -----ESIDALSNKHSKEECSSLPS--KSFNIEHCHQNSSSTVSLENEDVGSFRQEYRQP
                720       730         740       750       760      

     650       660       670       680       690       700         
pF1KB8 DSHKQTVATDSHEGLTENREPDSVDEKITFPSDIDPQVFYELPEAVQKELLAEWKRTGSD
                                                                   
CCDS40 YLCEVKTGQALVCPVCNVEQKTSDLTLFNVHVDVCLNKSFIQELRKDKFNPVNQPKESSR
        770       780       790       800       810       820      




715 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 12:38:04 2016 done: Fri Nov  4 12:38:04 2016
 Total Scan time:  3.000 Total Display time:  0.000

Function used was FASTA [36.3.4 Apr, 2011]
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