Result of FASTA (omim) for pF1KB8367
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB8367, 298 aa
  1>>>pF1KB8367 298 - 298 aa - 298 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 8.4165+/-0.000582; mu= -0.4228+/- 0.036
 mean_var=269.2979+/-55.414, 0's: 0 Z-trim(113.2): 232  B-trim: 33 in 1/59
 Lambda= 0.078155
 statistics sampled from 22125 (22380) to 22125 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.628), E-opt: 0.2 (0.262), width:  16
 Scan time:  5.410

The best scores are:                                      opt bits E(85289)
NP_067042 (OMIM: 606870) junctional adhesion molec ( 298) 1936 232.1   1e-60
NP_001257337 (OMIM: 606870) junctional adhesion mo ( 312) 1870 224.7 1.8e-58
NP_001257336 (OMIM: 606870) junctional adhesion mo ( 262) 1431 175.1 1.3e-43
NP_116190 (OMIM: 606871,613730) junctional adhesio ( 310)  642 86.2 8.6e-17
NP_058642 (OMIM: 605721) junctional adhesion molec ( 299)  563 77.3   4e-14
NP_001192258 (OMIM: 606871,613730) junctional adhe ( 259)  456 65.2 1.6e-10
NP_005805 (OMIM: 602171) cell surface A33 antigen  ( 319)  271 44.4 0.00034
XP_016855494 (OMIM: 602171) PREDICTED: cell surfac ( 211)  239 40.6  0.0032
NP_001316849 (OMIM: 606011) V-set and immunoglobul ( 284)  233 40.1  0.0062
NP_055127 (OMIM: 606011) V-set and immunoglobulin  ( 327)  233 40.2  0.0068


>>NP_067042 (OMIM: 606870) junctional adhesion molecule   (298 aa)
 initn: 1936 init1: 1936 opt: 1936  Z-score: 1211.2  bits: 232.1 E(85289): 1e-60
Smith-Waterman score: 1936; 100.0% identity (100.0% similar) in 298 aa overlap (1-298:1-298)

               10        20        30        40        50        60
pF1KB8 MARRSRHRLLLLLLRYLVVALGYHKAYGFSAPKDQQVVTAVEYQEAILACKTPKKTVSSR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_067 MARRSRHRLLLLLLRYLVVALGYHKAYGFSAPKDQQVVTAVEYQEAILACKTPKKTVSSR
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB8 LEWKKLGRSVSFVYYQQTLQGDFKNRAEMIDFNIRIKNVTRSDAGKYRCEVSAPSEQGQN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_067 LEWKKLGRSVSFVYYQQTLQGDFKNRAEMIDFNIRIKNVTRSDAGKYRCEVSAPSEQGQN
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB8 LEEDTVTLEVLVAPAVPSCEVPSSALSGTVVELRCQDKEGNPAPEYTWFKDGIRLLENPR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_067 LEEDTVTLEVLVAPAVPSCEVPSSALSGTVVELRCQDKEGNPAPEYTWFKDGIRLLENPR
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB8 LGSQSTNSSYTMNTKTGTLQFNTVSKLDTGEYSCEARNSVGYRRCPGKRMQVDDLNISGI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_067 LGSQSTNSSYTMNTKTGTLQFNTVSKLDTGEYSCEARNSVGYRRCPGKRMQVDDLNISGI
              190       200       210       220       230       240

              250       260       270       280       290        
pF1KB8 IAAVVVVALVISVCGLGVCYAQRKGYFSKETSFQKSNSSSKATTMSENDFKHTKSFII
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_067 IAAVVVVALVISVCGLGVCYAQRKGYFSKETSFQKSNSSSKATTMSENDFKHTKSFII
              250       260       270       280       290        

>>NP_001257337 (OMIM: 606870) junctional adhesion molecu  (312 aa)
 initn: 1870 init1: 1870 opt: 1870  Z-score: 1170.8  bits: 224.7 E(85289): 1.8e-58
Smith-Waterman score: 1870; 100.0% identity (100.0% similar) in 288 aa overlap (1-288:1-288)

               10        20        30        40        50        60
pF1KB8 MARRSRHRLLLLLLRYLVVALGYHKAYGFSAPKDQQVVTAVEYQEAILACKTPKKTVSSR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MARRSRHRLLLLLLRYLVVALGYHKAYGFSAPKDQQVVTAVEYQEAILACKTPKKTVSSR
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB8 LEWKKLGRSVSFVYYQQTLQGDFKNRAEMIDFNIRIKNVTRSDAGKYRCEVSAPSEQGQN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 LEWKKLGRSVSFVYYQQTLQGDFKNRAEMIDFNIRIKNVTRSDAGKYRCEVSAPSEQGQN
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB8 LEEDTVTLEVLVAPAVPSCEVPSSALSGTVVELRCQDKEGNPAPEYTWFKDGIRLLENPR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 LEEDTVTLEVLVAPAVPSCEVPSSALSGTVVELRCQDKEGNPAPEYTWFKDGIRLLENPR
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB8 LGSQSTNSSYTMNTKTGTLQFNTVSKLDTGEYSCEARNSVGYRRCPGKRMQVDDLNISGI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 LGSQSTNSSYTMNTKTGTLQFNTVSKLDTGEYSCEARNSVGYRRCPGKRMQVDDLNISGI
              190       200       210       220       230       240

              250       260       270       280       290          
pF1KB8 IAAVVVVALVISVCGLGVCYAQRKGYFSKETSFQKSNSSSKATTMSENDFKHTKSFII  
       ::::::::::::::::::::::::::::::::::::::::::::::::            
NP_001 IAAVVVVALVISVCGLGVCYAQRKGYFSKETSFQKSNSSSKATTMSENVQWLTPVIPALW
              250       260       270       280       290       300

NP_001 KAAAGGSRGQEF
              310  

>>NP_001257336 (OMIM: 606870) junctional adhesion molecu  (262 aa)
 initn: 1431 init1: 1431 opt: 1431  Z-score: 904.1  bits: 175.1 E(85289): 1.3e-43
Smith-Waterman score: 1622; 87.9% identity (87.9% similar) in 298 aa overlap (1-298:1-262)

               10        20        30        40        50        60
pF1KB8 MARRSRHRLLLLLLRYLVVALGYHKAYGFSAPKDQQVVTAVEYQEAILACKTPKKTVSSR
       ::::::::::::::::::::::::::::::::::::::::::::                
NP_001 MARRSRHRLLLLLLRYLVVALGYHKAYGFSAPKDQQVVTAVEYQ----------------
               10        20        30        40                    

               70        80        90       100       110       120
pF1KB8 LEWKKLGRSVSFVYYQQTLQGDFKNRAEMIDFNIRIKNVTRSDAGKYRCEVSAPSEQGQN
                           ::::::::::::::::::::::::::::::::::::::::
NP_001 --------------------GDFKNRAEMIDFNIRIKNVTRSDAGKYRCEVSAPSEQGQN
                               50        60        70        80    

              130       140       150       160       170       180
pF1KB8 LEEDTVTLEVLVAPAVPSCEVPSSALSGTVVELRCQDKEGNPAPEYTWFKDGIRLLENPR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 LEEDTVTLEVLVAPAVPSCEVPSSALSGTVVELRCQDKEGNPAPEYTWFKDGIRLLENPR
           90       100       110       120       130       140    

              190       200       210       220       230       240
pF1KB8 LGSQSTNSSYTMNTKTGTLQFNTVSKLDTGEYSCEARNSVGYRRCPGKRMQVDDLNISGI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 LGSQSTNSSYTMNTKTGTLQFNTVSKLDTGEYSCEARNSVGYRRCPGKRMQVDDLNISGI
          150       160       170       180       190       200    

              250       260       270       280       290        
pF1KB8 IAAVVVVALVISVCGLGVCYAQRKGYFSKETSFQKSNSSSKATTMSENDFKHTKSFII
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 IAAVVVVALVISVCGLGVCYAQRKGYFSKETSFQKSNSSSKATTMSENDFKHTKSFII
          210       220       230       240       250       260  

>>NP_116190 (OMIM: 606871,613730) junctional adhesion mo  (310 aa)
 initn: 551 init1: 436 opt: 642  Z-score: 422.5  bits: 86.2 E(85289): 8.6e-17
Smith-Waterman score: 642; 36.7% identity (70.3% similar) in 300 aa overlap (9-298:19-310)

                         10        20        30        40        50
pF1KB8           MARRSRHRLLLLLLRYLVVALGYHKAYGFSAPKDQQVVTAVEYQEAILAC
                         .::::.:  ...     : .... .   ::   :.. . :.:
NP_116 MALRRPPRLRLCARLPDFFLLLLFRGCLIG-----AVNLKSSNRTPVVQ--EFESVELSC
               10        20        30             40          50   

                60         70        80        90        100       
pF1KB8 K-TPKKTVSSRLEWKKL-GRSVSFVYYQQTLQGDFKNRAEMID-FNIRIKNVTRSDAGKY
         : ..: . :.::::.  .....:.... .:::. .:::..   ...: :::: :.. :
NP_116 IITDSQTSDPRIEWKKIQDEQTTYVFFDNKIQGDLAGRAEILGKTSLKIWNVTRRDSALY
            60        70        80        90       100       110   

       110       120       130       140       150       160       
pF1KB8 RCEVSAPSEQGQNLEEDTVTLEVLVAPAVPSCEVPSSALSGTVVELRCQDKEGNPAPEYT
       :::: : ... ....: .. : : : :..: :.::...  : .. :.::..::.: :.:.
NP_116 RCEVVARNDR-KEIDEIVIELTVQVKPVTPVCRVPKAVPVGKMATLHCQESEGHPRPHYS
           120        130       140       150       160       170  

       170       180       190       200       210       220       
pF1KB8 WFKDGIRLLENPRLGSQSTNSSYTMNTKTGTLQFNTVSKLDTGEYSCEARNSVGYRRCPG
       :... . :  . : . .  :::. .:..:::: :..: : :.:.: : : :..:  ::  
NP_116 WYRNDVPLPTDSRANPRFRNSSFHLNSETGTLVFTAVHKDDSGQYYCIASNDAGSARCEE
            180       190       200       210       220       230  

       230       240       250       260         270            280
pF1KB8 KRMQVDDLNISGIIAAVVVVALVISVCGLGVCYAQRKGYF--SKET--SFQ---KSNSSS
       ..:.: ::::.:::..:.::  :...  ::.: : :.:::  .:.   :..   : .. .
NP_116 QEMEVYDLNIGGIIGGVLVVLAVLALITLGICCAYRRGYFINNKQDGESYKNPGKPDGVN
            240       250       260       270       280       290  

              290        
pF1KB8 KATTMSENDFKHTKSFII
          :  :.::.: .::.:
NP_116 YIRTDEEGDFRHKSSFVI
            300       310

>>NP_058642 (OMIM: 605721) junctional adhesion molecule   (299 aa)
 initn: 417 init1: 319 opt: 563  Z-score: 374.5  bits: 77.3 E(85289): 4e-14
Smith-Waterman score: 563; 35.2% identity (64.5% similar) in 301 aa overlap (2-298:5-299)

                  10        20        30        40        50       
pF1KB8    MARRSRHRLLLLLLRYLVVALGYHKAYGFSAPKDQQVVTAVEYQEAILACKTPKKTV
           :.  :. : :..:  :. .:.  ..   :.  .   :   : . . :.:     . 
NP_058 MGTKAQVERKLLCLFILAILLCSLALGSVTVHSSEPE---VRIPENNPVKLSCAYSGFS-
               10        20        30           40        50       

        60         70        80        90       100       110      
pF1KB8 SSRLEWK-KLGRSVSFVYYQQTLQGDFKNRAEMIDFNIRIKNVTRSDAGKYRCEVSAPSE
       : :.:::   : .. .: :.. . .....:. ..  .: .:.::: :.: : : ::   :
NP_058 SPRVEWKFDQGDTTRLVCYNNKITASYEDRVTFLPTGITFKSVTREDTGTYTCMVS--EE
         60        70        80        90       100       110      

        120       130       140       150       160       170      
pF1KB8 QGQNLEEDTVTLEVLVAPAVPSCEVPSSALSGTVVELRCQDKEGNPAPEYTWFKDGIRLL
        :..  :  : : ::: :. :. ..::::  :. . : :....:.:  ::::::::: . 
NP_058 GGNSYGEVKVKLIVLVPPSKPTVNIPSSATIGNRAVLTCSEQDGSPPSEYTWFKDGIVMP
          120       130       140       150       160       170    

        180       190       200       210       220        230     
pF1KB8 ENPRLGSQSTNSSYTMNTKTGTLQFNTVSKLDTGEYSCEARNSVGYRRCPGK-RMQVDDL
        ::.     .::::..:  :: : :. .:  :::::::::::. :     .  ::.. . 
NP_058 TNPKSTRAFSNSSYVLNPTTGELVFDPLSASDTGEYSCEARNGYGTPMTSNAVRMEAVER
          180       190       200       210       220       230    

         240       250       260         270       280       290   
pF1KB8 NISGIIAAVVVVALVISVCGLGVCYAQRKGYF--SKETSFQKSNSSSKATTMSENDFKHT
       :.. :.:::.:. .....  .:. .:  .:.:  .:. . .:.   :. .. ::..::.:
NP_058 NVGVIVAAVLVTLILLGILVFGIWFAYSRGHFDRTKKGTSSKKVIYSQPSARSEGEFKQT
          240       250       260       270       280       290    

            
pF1KB8 KSFII
       .::..
NP_058 SSFLV
            

>>NP_001192258 (OMIM: 606871,613730) junctional adhesion  (259 aa)
 initn: 478 init1: 421 opt: 456  Z-score: 310.1  bits: 65.2 E(85289): 1.6e-10
Smith-Waterman score: 456; 36.3% identity (69.2% similar) in 201 aa overlap (110-298:59-259)

      80        90       100       110       120            130    
pF1KB8 QGDFKNRAEMIDFNIRIKNVTRSDAGKYRCEVSAPSEQGQNLEEDTVTL-----EVLVAP
                                     ..: :  . ...... .:      .. : :
NP_001 IGAVNLKSSNRTPVVQEFESVELSCIITDSQTSDPRIEWKKIQDEQTTYVFFDNKIQVKP
       30        40        50        60        70        80        

          140       150       160       170       180       190    
pF1KB8 AVPSCEVPSSALSGTVVELRCQDKEGNPAPEYTWFKDGIRLLENPRLGSQSTNSSYTMNT
       ..: :.::...  : .. :.::..::.: :.:.:... . :  . : . .  :::. .:.
NP_001 VTPVCRVPKAVPVGKMATLHCQESEGHPRPHYSWYRNDVPLPTDSRANPRFRNSSFHLNS
       90       100       110       120       130       140        

          200       210       220       230       240       250    
pF1KB8 KTGTLQFNTVSKLDTGEYSCEARNSVGYRRCPGKRMQVDDLNISGIIAAVVVVALVISVC
       .:::: :..: : :.:.: : : :..:  ::  ..:.: ::::.:::..:.::  :... 
NP_001 ETGTLVFTAVHKDDSGQYYCIASNDAGSARCEEQEMEVYDLNIGGIIGGVLVVLAVLALI
      150       160       170       180       190       200        

          260         270            280       290        
pF1KB8 GLGVCYAQRKGYF--SKET--SFQ---KSNSSSKATTMSENDFKHTKSFII
        ::.: : :.:::  .:.   :..   : .. .   :  :.::.: .::.:
NP_001 TLGICCAYRRGYFINNKQDGESYKNPGKPDGVNYIRTDEEGDFRHKSSFVI
      210       220       230       240       250         

>>NP_005805 (OMIM: 602171) cell surface A33 antigen prec  (319 aa)
 initn: 188 init1: 146 opt: 271  Z-score: 196.3  bits: 44.4 E(85289): 0.00034
Smith-Waterman score: 298; 27.2% identity (56.6% similar) in 265 aa overlap (30-270:23-272)

               10        20        30        40        50        60
pF1KB8 MARRSRHRLLLLLLRYLVVALGYHKAYGFSAPKDQQVVTAVEYQEAILACKTPKKTVSSR
                                    :.   :.:. : . . . : : : . ..:::
NP_005        MVGKMWPVLWTLCAVRVTVDAISVETPQDVLRASQGKSVTLPC-TYHTSTSSR
                      10        20        30        40         50  

                       70         80               90       100    
pF1KB8 ---LEWKKL-----GRSVSFVYYQQT-LQGD-FKNR------AEMIDFNIRIKNVTRSDA
          ..: ::      : : . . ... ..:. .:::      ::. : .: : ..: .: 
NP_005 EGLIQWDKLLLTHTERVVIWPFSNKNYIHGELYKNRVSISNNAEQSDASITIDQLTMADN
             60        70        80        90       100       110  

          110       120       130       140       150       160    
pF1KB8 GKYRCEVSAPSEQGQNLEEDTVTLEVLVAPAVPSCEVPSSALSGTVVELRCQDKEGNPAP
       : :.: ::  :.   : . . : : ::: :. : : . . .. :. ..: ::.:::.:.:
NP_005 GTYECSVSLMSDLEGNTK-SRVRLLVLVPPSKPECGIEGETIIGNNIQLTCQSKEGSPTP
            120       130        140       150       160       170 

          170       180       190       200       210       220    
pF1KB8 EYTWFKDGIRLLENPRLGSQSTNSSYTMNTKTGTLQFNTVSKLDTGEYSCEARNSVGYRR
       .:.: . .:   :.: :.. ....  ....         .:   .: : : . :  : . 
NP_005 QYSWKRYNILNQEQP-LAQPASGQPVSLKN---------ISTDTSGYYICTSSNEEGTQF
             180        190       200                210       220 

           230              240       250       260       270      
pF1KB8 CPGK-RMQVDDLNIS-------GIIAAVVVVALVISVCGLGVCYAQRKGYFSKETSFQKS
       :     ..  ..:..       :..::.......:  :    : ..  .  .::      
NP_005 CNITVAVRSPSMNVALYVGIAVGVVAALIIIGIIIYCC---CCRGKDDNTEDKEDARPNR
             230       240       250          260       270        

        280       290                           
pF1KB8 NSSSKATTMSENDFKHTKSFII                   
                                                
NP_005 EAYEEPPEQLRELSREREEEDDYRQEEQRSTGRESPDHLDQ
      280       290       300       310         

>>XP_016855494 (OMIM: 602171) PREDICTED: cell surface A3  (211 aa)
 initn: 206 init1: 146 opt: 239  Z-score: 178.9  bits: 40.6 E(85289): 0.0032
Smith-Waterman score: 241; 26.6% identity (57.1% similar) in 177 aa overlap (102-270:2-164)

              80        90       100       110       120       130 
pF1KB8 FVYYQQTLQGDFKNRAEMIDFNIRIKNVTRSDAGKYRCEVSAPSEQGQNLEEDTVTLEVL
                                     .: : :.: ::  :.   : . . : : ::
XP_016                              MADNGTYECSVSLMSDLEGNTK-SRVRLLVL
                                            10        20         30

             140       150       160       170       180       190 
pF1KB8 VAPAVPSCEVPSSALSGTVVELRCQDKEGNPAPEYTWFKDGIRLLENPRLGSQSTNSSYT
       : :. : : . . .. :. ..: ::.:::.:.:.:.: . .:   :.: :.. ....  .
XP_016 VPPSKPECGIEGETIIGNNIQLTCQSKEGSPTPQYSWKRYNILNQEQP-LAQPASGQPVS
               40        50        60        70         80         

             200       210       220        230              240   
pF1KB8 MNTKTGTLQFNTVSKLDTGEYSCEARNSVGYRRCPGK-RMQVDDLNIS-------GIIAA
       ...         .:   .: : : . :  : . :     ..  ..:..       :..::
XP_016 LKN---------ISTDTSGYYICTSSNEEGTQFCNITVAVRSPSMNVALYVGIAVGVVAA
      90                100       110       120       130       140

           250       260       270       280       290             
pF1KB8 VVVVALVISVCGLGVCYAQRKGYFSKETSFQKSNSSSKATTMSENDFKHTKSFII     
       .......:  :    : ..  .  .::                                 
XP_016 LIIIGIIIYCC---CCRGKDDNTEDKEDARPNREAYEEPPEQLRELSREREEEDDYRQEE
              150          160       170       180       190       

>>NP_001316849 (OMIM: 606011) V-set and immunoglobulin d  (284 aa)
 initn: 154 init1: 118 opt: 233  Z-score: 173.7  bits: 40.1 E(85289): 0.0062
Smith-Waterman score: 235; 28.0% identity (57.1% similar) in 182 aa overlap (94-271:106-277)

            70        80        90       100       110       120   
pF1KB8 KKLGRSVSFVYYQQTLQGDFKNRAEMIDFNIRIKNVTRSDAGKYRCEVSAPSEQGQNLEE
                                     ... .:  ::.: : :.:. : .   :   
NP_001 YFTNGHLYPTGSKSKRVSLLQNPPTVGVATLKLTDVHPSDTGTYLCQVNNPPDFYTN-GL
          80        90       100       110       120       130     

           130       140       150       160       170       180   
pF1KB8 DTVTLEVLVAPAVPSCEVPSSALSGTVVELRCQDKEGNPAPEYTWFKDGIRLLENPRLGS
         ..: ::: :. : :   ...  :  . :::...:: : : :.: . :   . .:  ::
NP_001 GLINLTVLVPPSNPLCSQSGQTSVGGSTALRCSSSEGAPKPVYNWVRLGT--FPTPSPGS
          140       150       160       170       180         190  

           190       200       210       220       230          240
pF1KB8 QSTNSSYTMNTKTGTLQFNTVSKLDTGEYSCEARNSVGYRRCPGKRMQVDDLN---ISGI
       .      ...  .: : ....:  ..: : : : :..:   :    ..: . .   ..: 
NP_001 M------VQDEVSGQLILTNLSLTSSGTYRCVATNQMGSASCE-LTLSVTEPSQGRVAGA
                  200       210       220        230       240     

              250       260        270       280       290        
pF1KB8 IAAVVVVALVISVCGLGVCYAQR-KGYFSKETSFQKSNSSSKATTMSENDFKHTKSFII
       . .:.. .:..:: .. .   :. .:   :::                           
NP_001 LIGVLLGVLLLSVAAFCLVRFQKERGKKPKETYGGSDLR                    
         250       260       270       280                        

>>NP_055127 (OMIM: 606011) V-set and immunoglobulin doma  (327 aa)
 initn: 118 init1: 118 opt: 233  Z-score: 173.0  bits: 40.2 E(85289): 0.0068
Smith-Waterman score: 235; 28.0% identity (57.1% similar) in 182 aa overlap (94-271:106-277)

            70        80        90       100       110       120   
pF1KB8 KKLGRSVSFVYYQQTLQGDFKNRAEMIDFNIRIKNVTRSDAGKYRCEVSAPSEQGQNLEE
                                     ... .:  ::.: : :.:. : .   :   
NP_055 YFTNGHLYPTGSKSKRVSLLQNPPTVGVATLKLTDVHPSDTGTYLCQVNNPPDFYTN-GL
          80        90       100       110       120       130     

           130       140       150       160       170       180   
pF1KB8 DTVTLEVLVAPAVPSCEVPSSALSGTVVELRCQDKEGNPAPEYTWFKDGIRLLENPRLGS
         ..: ::: :. : :   ...  :  . :::...:: : : :.: . :   . .:  ::
NP_055 GLINLTVLVPPSNPLCSQSGQTSVGGSTALRCSSSEGAPKPVYNWVRLGT--FPTPSPGS
          140       150       160       170       180         190  

           190       200       210       220       230          240
pF1KB8 QSTNSSYTMNTKTGTLQFNTVSKLDTGEYSCEARNSVGYRRCPGKRMQVDDLN---ISGI
       .      ...  .: : ....:  ..: : : : :..:   :    ..: . .   ..: 
NP_055 M------VQDEVSGQLILTNLSLTSSGTYRCVATNQMGSASCE-LTLSVTEPSQGRVAGA
                  200       210       220        230       240     

              250       260        270       280       290         
pF1KB8 IAAVVVVALVISVCGLGVCYAQR-KGYFSKETSFQKSNSSSKATTMSENDFKHTKSFII 
       . .:.. .:..:: .. .   :. .:   :::                            
NP_055 LIGVLLGVLLLSVAAFCLVRFQKERGKKPKETYGGSDLREDAIAPGISEHTCMRADSSKG
         250       260       270       280       290       300     

NP_055 FLERPSSASTVTTTKSKLPMVV
         310       320       




298 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 12:17:20 2016 done: Fri Nov  4 12:17:21 2016
 Total Scan time:  5.410 Total Display time:  0.010

Function used was FASTA [36.3.4 Apr, 2011]
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