Result of FASTA (omim) for pF1KB8360
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB8360, 168 aa
  1>>>pF1KB8360 168 - 168 aa - 168 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.2276+/-0.000295; mu= 14.0603+/- 0.019
 mean_var=81.2056+/-15.755, 0's: 0 Z-trim(118.7): 43  B-trim: 0 in 0/51
 Lambda= 0.142325
 statistics sampled from 31789 (31833) to 31789 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.74), E-opt: 0.2 (0.373), width:  16
 Scan time:  4.500

The best scores are:                                      opt bits E(85289)
NP_002816 (OMIM: 162095) pleiotrophin isoform 1 pr ( 168) 1167 248.3 4.4e-66
NP_001308315 (OMIM: 162095) pleiotrophin isoform 1 ( 168) 1167 248.3 4.4e-66
NP_001308316 (OMIM: 162095) pleiotrophin isoform 2 ( 167) 1150 244.8 4.9e-65
XP_016867962 (OMIM: 162095) PREDICTED: pleiotrophi ( 167) 1150 244.8 4.9e-65
NP_001257480 (OMIM: 162096) midkine isoform a prec ( 143)  509 113.1 1.8e-25
NP_001012334 (OMIM: 162096) midkine isoform a prec ( 143)  509 113.1 1.8e-25
XP_016873253 (OMIM: 162096) PREDICTED: midkine iso ( 143)  509 113.1 1.8e-25
NP_002382 (OMIM: 162096) midkine isoform a precurs ( 143)  509 113.1 1.8e-25
NP_001012333 (OMIM: 162096) midkine isoform a prec ( 143)  509 113.1 1.8e-25
XP_011518418 (OMIM: 162096) PREDICTED: midkine iso ( 143)  509 113.1 1.8e-25
NP_001257479 (OMIM: 162096) midkine isoform a prec ( 143)  509 113.1 1.8e-25
NP_001257481 (OMIM: 162096) midkine isoform b prec (  87)  241 57.9 4.7e-09


>>NP_002816 (OMIM: 162095) pleiotrophin isoform 1 precur  (168 aa)
 initn: 1167 init1: 1167 opt: 1167  Z-score: 1307.4  bits: 248.3 E(85289): 4.4e-66
Smith-Waterman score: 1167; 100.0% identity (100.0% similar) in 168 aa overlap (1-168:1-168)

               10        20        30        40        50        60
pF1KB8 MQAQQYQQQRRKFAAAFLAFIFILAAVDTAEAGKKEKPEKKVKKSDCGEWQWSVCVPTSG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_002 MQAQQYQQQRRKFAAAFLAFIFILAAVDTAEAGKKEKPEKKVKKSDCGEWQWSVCVPTSG
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB8 DCGLGTREGTRTGAECKQTMKTQRCKIPCNWKKQFGAECKYQFQAWGECDLNTALKTRTG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_002 DCGLGTREGTRTGAECKQTMKTQRCKIPCNWKKQFGAECKYQFQAWGECDLNTALKTRTG
               70        80        90       100       110       120

              130       140       150       160        
pF1KB8 SLKRALHNAECQKTVTISKPCGKLTKPKPQAESKKKKKEGKKQEKMLD
       ::::::::::::::::::::::::::::::::::::::::::::::::
NP_002 SLKRALHNAECQKTVTISKPCGKLTKPKPQAESKKKKKEGKKQEKMLD
              130       140       150       160        

>>NP_001308315 (OMIM: 162095) pleiotrophin isoform 1 pre  (168 aa)
 initn: 1167 init1: 1167 opt: 1167  Z-score: 1307.4  bits: 248.3 E(85289): 4.4e-66
Smith-Waterman score: 1167; 100.0% identity (100.0% similar) in 168 aa overlap (1-168:1-168)

               10        20        30        40        50        60
pF1KB8 MQAQQYQQQRRKFAAAFLAFIFILAAVDTAEAGKKEKPEKKVKKSDCGEWQWSVCVPTSG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MQAQQYQQQRRKFAAAFLAFIFILAAVDTAEAGKKEKPEKKVKKSDCGEWQWSVCVPTSG
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB8 DCGLGTREGTRTGAECKQTMKTQRCKIPCNWKKQFGAECKYQFQAWGECDLNTALKTRTG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 DCGLGTREGTRTGAECKQTMKTQRCKIPCNWKKQFGAECKYQFQAWGECDLNTALKTRTG
               70        80        90       100       110       120

              130       140       150       160        
pF1KB8 SLKRALHNAECQKTVTISKPCGKLTKPKPQAESKKKKKEGKKQEKMLD
       ::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 SLKRALHNAECQKTVTISKPCGKLTKPKPQAESKKKKKEGKKQEKMLD
              130       140       150       160        

>>NP_001308316 (OMIM: 162095) pleiotrophin isoform 2 pre  (167 aa)
 initn: 1130 init1: 1079 opt: 1150  Z-score: 1288.6  bits: 244.8 E(85289): 4.9e-65
Smith-Waterman score: 1150; 99.4% identity (99.4% similar) in 168 aa overlap (1-168:1-167)

               10        20        30        40        50        60
pF1KB8 MQAQQYQQQRRKFAAAFLAFIFILAAVDTAEAGKKEKPEKKVKKSDCGEWQWSVCVPTSG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MQAQQYQQQRRKFAAAFLAFIFILAAVDTAEAGKKEKPEKKVKKSDCGEWQWSVCVPTSG
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB8 DCGLGTREGTRTGAECKQTMKTQRCKIPCNWKKQFGAECKYQFQAWGECDLNTALKTRTG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 DCGLGTREGTRTGAECKQTMKTQRCKIPCNWKKQFGAECKYQFQAWGECDLNTALKTRTG
               70        80        90       100       110       120

              130       140       150       160        
pF1KB8 SLKRALHNAECQKTVTISKPCGKLTKPKPQAESKKKKKEGKKQEKMLD
       :::::::::::::::::::::::::::::: :::::::::::::::::
NP_001 SLKRALHNAECQKTVTISKPCGKLTKPKPQ-ESKKKKKEGKKQEKMLD
              130       140       150        160       

>>XP_016867962 (OMIM: 162095) PREDICTED: pleiotrophin is  (167 aa)
 initn: 1130 init1: 1079 opt: 1150  Z-score: 1288.6  bits: 244.8 E(85289): 4.9e-65
Smith-Waterman score: 1150; 99.4% identity (99.4% similar) in 168 aa overlap (1-168:1-167)

               10        20        30        40        50        60
pF1KB8 MQAQQYQQQRRKFAAAFLAFIFILAAVDTAEAGKKEKPEKKVKKSDCGEWQWSVCVPTSG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 MQAQQYQQQRRKFAAAFLAFIFILAAVDTAEAGKKEKPEKKVKKSDCGEWQWSVCVPTSG
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB8 DCGLGTREGTRTGAECKQTMKTQRCKIPCNWKKQFGAECKYQFQAWGECDLNTALKTRTG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 DCGLGTREGTRTGAECKQTMKTQRCKIPCNWKKQFGAECKYQFQAWGECDLNTALKTRTG
               70        80        90       100       110       120

              130       140       150       160        
pF1KB8 SLKRALHNAECQKTVTISKPCGKLTKPKPQAESKKKKKEGKKQEKMLD
       :::::::::::::::::::::::::::::: :::::::::::::::::
XP_016 SLKRALHNAECQKTVTISKPCGKLTKPKPQ-ESKKKKKEGKKQEKMLD
              130       140       150        160       

>>NP_001257480 (OMIM: 162096) midkine isoform a precurso  (143 aa)
 initn: 538 init1: 333 opt: 509  Z-score: 578.1  bits: 113.1 E(85289): 1.8e-25
Smith-Waterman score: 509; 48.4% identity (72.5% similar) in 153 aa overlap (9-161:2-142)

               10        20        30        40        50        60
pF1KB8 MQAQQYQQQRRKFAAAFLAFIFILAAVDTAEAGKKEKPEKKVKKSDCGEWQWSVCVPTSG
               :.: :   .:  .. : :. .: : ::.: .:    :.:.:: :. :.:.: 
NP_001        MQHRGF---LLLTLLALLALTSAVAKKKDKVKKGGPGSECAEWAWGPCTPSSK
                         10        20        30        40        50

               70        80        90       100       110       120
pF1KB8 DCGLGTREGTRTGAECKQTMKTQRCKIPCNWKKQFGAECKYQFQAWGECDLNTALKTRTG
       :::.: ::::  ::   ::..  ::..::::::.:::.:::.:. :: :: .:. :.: :
NP_001 DCGVGFREGT-CGA---QTQRI-RCRVPCNWKKEFGADCKYKFENWGACDGGTGTKVRQG
               60             70        80        90       100     

              130       140       150       160        
pF1KB8 SLKRALHNAECQKTVTISKPCGKLTKPKPQAESKKKKKEGKKQEKMLD
       .::.: .::.::.:. ..:::     :: .:..: :: .::       
NP_001 TLKKARYNAQCQETIRVTKPC----TPKTKAKAKAKKGKGKD      
         110       120           130       140         

>>NP_001012334 (OMIM: 162096) midkine isoform a precurso  (143 aa)
 initn: 538 init1: 333 opt: 509  Z-score: 578.1  bits: 113.1 E(85289): 1.8e-25
Smith-Waterman score: 509; 48.4% identity (72.5% similar) in 153 aa overlap (9-161:2-142)

               10        20        30        40        50        60
pF1KB8 MQAQQYQQQRRKFAAAFLAFIFILAAVDTAEAGKKEKPEKKVKKSDCGEWQWSVCVPTSG
               :.: :   .:  .. : :. .: : ::.: .:    :.:.:: :. :.:.: 
NP_001        MQHRGF---LLLTLLALLALTSAVAKKKDKVKKGGPGSECAEWAWGPCTPSSK
                         10        20        30        40        50

               70        80        90       100       110       120
pF1KB8 DCGLGTREGTRTGAECKQTMKTQRCKIPCNWKKQFGAECKYQFQAWGECDLNTALKTRTG
       :::.: ::::  ::   ::..  ::..::::::.:::.:::.:. :: :: .:. :.: :
NP_001 DCGVGFREGT-CGA---QTQRI-RCRVPCNWKKEFGADCKYKFENWGACDGGTGTKVRQG
               60             70        80        90       100     

              130       140       150       160        
pF1KB8 SLKRALHNAECQKTVTISKPCGKLTKPKPQAESKKKKKEGKKQEKMLD
       .::.: .::.::.:. ..:::     :: .:..: :: .::       
NP_001 TLKKARYNAQCQETIRVTKPC----TPKTKAKAKAKKGKGKD      
         110       120           130       140         

>>XP_016873253 (OMIM: 162096) PREDICTED: midkine isoform  (143 aa)
 initn: 538 init1: 333 opt: 509  Z-score: 578.1  bits: 113.1 E(85289): 1.8e-25
Smith-Waterman score: 509; 48.4% identity (72.5% similar) in 153 aa overlap (9-161:2-142)

               10        20        30        40        50        60
pF1KB8 MQAQQYQQQRRKFAAAFLAFIFILAAVDTAEAGKKEKPEKKVKKSDCGEWQWSVCVPTSG
               :.: :   .:  .. : :. .: : ::.: .:    :.:.:: :. :.:.: 
XP_016        MQHRGF---LLLTLLALLALTSAVAKKKDKVKKGGPGSECAEWAWGPCTPSSK
                         10        20        30        40        50

               70        80        90       100       110       120
pF1KB8 DCGLGTREGTRTGAECKQTMKTQRCKIPCNWKKQFGAECKYQFQAWGECDLNTALKTRTG
       :::.: ::::  ::   ::..  ::..::::::.:::.:::.:. :: :: .:. :.: :
XP_016 DCGVGFREGT-CGA---QTQRI-RCRVPCNWKKEFGADCKYKFENWGACDGGTGTKVRQG
               60             70        80        90       100     

              130       140       150       160        
pF1KB8 SLKRALHNAECQKTVTISKPCGKLTKPKPQAESKKKKKEGKKQEKMLD
       .::.: .::.::.:. ..:::     :: .:..: :: .::       
XP_016 TLKKARYNAQCQETIRVTKPC----TPKTKAKAKAKKGKGKD      
         110       120           130       140         

>>NP_002382 (OMIM: 162096) midkine isoform a precursor [  (143 aa)
 initn: 538 init1: 333 opt: 509  Z-score: 578.1  bits: 113.1 E(85289): 1.8e-25
Smith-Waterman score: 509; 48.4% identity (72.5% similar) in 153 aa overlap (9-161:2-142)

               10        20        30        40        50        60
pF1KB8 MQAQQYQQQRRKFAAAFLAFIFILAAVDTAEAGKKEKPEKKVKKSDCGEWQWSVCVPTSG
               :.: :   .:  .. : :. .: : ::.: .:    :.:.:: :. :.:.: 
NP_002        MQHRGF---LLLTLLALLALTSAVAKKKDKVKKGGPGSECAEWAWGPCTPSSK
                         10        20        30        40        50

               70        80        90       100       110       120
pF1KB8 DCGLGTREGTRTGAECKQTMKTQRCKIPCNWKKQFGAECKYQFQAWGECDLNTALKTRTG
       :::.: ::::  ::   ::..  ::..::::::.:::.:::.:. :: :: .:. :.: :
NP_002 DCGVGFREGT-CGA---QTQRI-RCRVPCNWKKEFGADCKYKFENWGACDGGTGTKVRQG
               60             70        80        90       100     

              130       140       150       160        
pF1KB8 SLKRALHNAECQKTVTISKPCGKLTKPKPQAESKKKKKEGKKQEKMLD
       .::.: .::.::.:. ..:::     :: .:..: :: .::       
NP_002 TLKKARYNAQCQETIRVTKPC----TPKTKAKAKAKKGKGKD      
         110       120           130       140         

>>NP_001012333 (OMIM: 162096) midkine isoform a precurso  (143 aa)
 initn: 538 init1: 333 opt: 509  Z-score: 578.1  bits: 113.1 E(85289): 1.8e-25
Smith-Waterman score: 509; 48.4% identity (72.5% similar) in 153 aa overlap (9-161:2-142)

               10        20        30        40        50        60
pF1KB8 MQAQQYQQQRRKFAAAFLAFIFILAAVDTAEAGKKEKPEKKVKKSDCGEWQWSVCVPTSG
               :.: :   .:  .. : :. .: : ::.: .:    :.:.:: :. :.:.: 
NP_001        MQHRGF---LLLTLLALLALTSAVAKKKDKVKKGGPGSECAEWAWGPCTPSSK
                         10        20        30        40        50

               70        80        90       100       110       120
pF1KB8 DCGLGTREGTRTGAECKQTMKTQRCKIPCNWKKQFGAECKYQFQAWGECDLNTALKTRTG
       :::.: ::::  ::   ::..  ::..::::::.:::.:::.:. :: :: .:. :.: :
NP_001 DCGVGFREGT-CGA---QTQRI-RCRVPCNWKKEFGADCKYKFENWGACDGGTGTKVRQG
               60             70        80        90       100     

              130       140       150       160        
pF1KB8 SLKRALHNAECQKTVTISKPCGKLTKPKPQAESKKKKKEGKKQEKMLD
       .::.: .::.::.:. ..:::     :: .:..: :: .::       
NP_001 TLKKARYNAQCQETIRVTKPC----TPKTKAKAKAKKGKGKD      
         110       120           130       140         

>>XP_011518418 (OMIM: 162096) PREDICTED: midkine isoform  (143 aa)
 initn: 538 init1: 333 opt: 509  Z-score: 578.1  bits: 113.1 E(85289): 1.8e-25
Smith-Waterman score: 509; 48.4% identity (72.5% similar) in 153 aa overlap (9-161:2-142)

               10        20        30        40        50        60
pF1KB8 MQAQQYQQQRRKFAAAFLAFIFILAAVDTAEAGKKEKPEKKVKKSDCGEWQWSVCVPTSG
               :.: :   .:  .. : :. .: : ::.: .:    :.:.:: :. :.:.: 
XP_011        MQHRGF---LLLTLLALLALTSAVAKKKDKVKKGGPGSECAEWAWGPCTPSSK
                         10        20        30        40        50

               70        80        90       100       110       120
pF1KB8 DCGLGTREGTRTGAECKQTMKTQRCKIPCNWKKQFGAECKYQFQAWGECDLNTALKTRTG
       :::.: ::::  ::   ::..  ::..::::::.:::.:::.:. :: :: .:. :.: :
XP_011 DCGVGFREGT-CGA---QTQRI-RCRVPCNWKKEFGADCKYKFENWGACDGGTGTKVRQG
               60             70        80        90       100     

              130       140       150       160        
pF1KB8 SLKRALHNAECQKTVTISKPCGKLTKPKPQAESKKKKKEGKKQEKMLD
       .::.: .::.::.:. ..:::     :: .:..: :: .::       
XP_011 TLKKARYNAQCQETIRVTKPC----TPKTKAKAKAKKGKGKD      
         110       120           130       140         




168 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 12:06:44 2016 done: Fri Nov  4 12:06:45 2016
 Total Scan time:  4.500 Total Display time: -0.010

Function used was FASTA [36.3.4 Apr, 2011]
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