Result of FASTA (ccds) for pF1KB8329
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB8329, 215 aa
  1>>>pF1KB8329 215 - 215 aa - 215 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.1532+/-0.000966; mu= 14.1317+/- 0.059
 mean_var=72.9833+/-14.700, 0's: 0 Z-trim(105.1): 214  B-trim: 239 in 1/50
 Lambda= 0.150128
 statistics sampled from 7990 (8232) to 7990 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.639), E-opt: 0.2 (0.253), width:  16
 Scan time:  1.600

The best scores are:                                      opt bits E(32554)
CCDS8900.1 RAB5B gene_id:5869|Hs108|chr12          ( 215) 1391 310.5   5e-85
CCDS11419.1 RAB5C gene_id:5878|Hs108|chr17         ( 216) 1190 267.0 6.4e-72
CCDS58551.1 RAB5C gene_id:5878|Hs108|chr17         ( 249) 1190 267.0 7.1e-72
CCDS2633.1 RAB5A gene_id:5868|Hs108|chr3           ( 215) 1178 264.4 3.8e-71
CCDS77710.1 RAB5A gene_id:5868|Hs108|chr3          ( 201)  806 183.8 6.6e-47
CCDS58244.1 RAB5B gene_id:5869|Hs108|chr12         ( 174)  696 159.9 8.7e-40
CCDS33497.1 RAB22A gene_id:57403|Hs108|chr20       ( 194)  615 142.4 1.8e-34
CCDS45826.1 RAB31 gene_id:11031|Hs108|chr18        ( 195)  586 136.1 1.4e-32
CCDS2520.1 RAB17 gene_id:64284|Hs108|chr2          ( 212)  559 130.3 8.7e-31
CCDS46306.1 RAB1A gene_id:5861|Hs108|chr2          ( 205)  537 125.6 2.3e-29
CCDS3082.1 RAB6B gene_id:51560|Hs108|chr3          ( 208)  522 122.3 2.2e-28
CCDS31613.1 RAB1B gene_id:81876|Hs108|chr11        ( 201)  518 121.4 3.9e-28
CCDS8223.1 RAB6A gene_id:5870|Hs108|chr11          ( 208)  514 120.6 7.4e-28
CCDS8224.1 RAB6A gene_id:5870|Hs108|chr11          ( 208)  510 119.7 1.3e-27
CCDS9570.1 RAB2B gene_id:84932|Hs108|chr14         ( 216)  505 118.6 2.9e-27
CCDS11703.1 RAB37 gene_id:326624|Hs108|chr17       ( 216)  498 117.1 8.4e-27
CCDS9003.1 RAB21 gene_id:23011|Hs108|chr12         ( 225)  494 116.3 1.6e-26
CCDS6175.1 RAB2A gene_id:5862|Hs108|chr8           ( 212)  488 114.9 3.7e-26
CCDS41413.1 RAB25 gene_id:57111|Hs108|chr1         ( 213)  486 114.5   5e-26
CCDS12201.1 RAB11B gene_id:9230|Hs108|chr19        ( 218)  486 114.5 5.1e-26
CCDS54161.1 RAB37 gene_id:326624|Hs108|chr17       ( 228)  486 114.5 5.3e-26
CCDS1058.1 RAB13 gene_id:5872|Hs108|chr1           ( 203)  483 113.9 7.6e-26
CCDS82514.1 WTH3DI gene_id:150786|Hs108|chr2       ( 254)  484 114.1 7.8e-26
CCDS10212.1 RAB11A gene_id:8766|Hs108|chr15        ( 216)  483 113.9   8e-26
CCDS32722.1 RAB37 gene_id:326624|Hs108|chr17       ( 223)  481 113.4 1.1e-25
CCDS46408.1 RAB6C gene_id:84084|Hs108|chr2         ( 254)  479 113.1 1.6e-25
CCDS82198.1 RAB37 gene_id:326624|Hs108|chr17       ( 196)  477 112.5 1.8e-25
CCDS12339.1 RAB8A gene_id:4218|Hs108|chr19         ( 207)  477 112.6 1.9e-25
CCDS8264.1 RAB30 gene_id:27314|Hs108|chr11         ( 203)  472 111.5   4e-25
CCDS6827.1 RAB14 gene_id:51552|Hs108|chr9          ( 215)  471 111.3 4.8e-25
CCDS34762.2 RAB19 gene_id:401409|Hs108|chr7        ( 217)  469 110.8 6.5e-25
CCDS10183.1 RAB8B gene_id:51762|Hs108|chr15        ( 207)  463 109.5 1.6e-24
CCDS33030.1 RAB4B gene_id:53916|Hs108|chr19        ( 213)  463 109.5 1.6e-24
CCDS35322.2 RAB41 gene_id:347517|Hs108|chrX        ( 221)  463 109.5 1.6e-24
CCDS7155.1 RAB18 gene_id:22931|Hs108|chr10         ( 206)  455 107.8 5.1e-24
CCDS34300.1 RAB24 gene_id:53917|Hs108|chr5         ( 203)  453 107.4 6.9e-24
CCDS12257.1 RAB3D gene_id:9545|Hs108|chr19         ( 219)  453 107.4 7.3e-24
CCDS41846.1 RAB35 gene_id:11021|Hs108|chr12        ( 201)  452 107.1 7.9e-24
CCDS33850.1 RAB43 gene_id:339122|Hs108|chr3        ( 212)  448 106.3 1.5e-23
CCDS1720.1 RAB10 gene_id:10890|Hs108|chr2          ( 200)  443 105.2   3e-23
CCDS10460.1 RAB26 gene_id:25837|Hs108|chr16        ( 256)  444 105.5 3.2e-23
CCDS31050.1 RAB4A gene_id:5867|Hs108|chr1          ( 218)  438 104.1 6.9e-23
CCDS58373.1 RAB11A gene_id:8766|Hs108|chr15        ( 155)  435 103.4 8.3e-23
CCDS3052.1 RAB7A gene_id:7879|Hs108|chr3           ( 207)  430 102.4 2.2e-22
CCDS76806.1 RAB26 gene_id:25837|Hs108|chr16        ( 190)  429 102.1 2.4e-22
CCDS12372.1 RAB3A gene_id:5864|Hs108|chr19         ( 220)  424 101.1 5.7e-22
CCDS76691.1 RAB15 gene_id:376267|Hs108|chr14       ( 212)  423 100.9 6.4e-22
CCDS58155.1 RAB6A gene_id:5870|Hs108|chr11         ( 175)  420 100.2 8.7e-22
CCDS14621.1 RAB33A gene_id:9363|Hs108|chrX         ( 237)  420 100.3 1.1e-21
CCDS3747.1 RAB33B gene_id:83452|Hs108|chr4         ( 229)  410 98.1 4.8e-21


>>CCDS8900.1 RAB5B gene_id:5869|Hs108|chr12               (215 aa)
 initn: 1391 init1: 1391 opt: 1391  Z-score: 1640.0  bits: 310.5 E(32554): 5e-85
Smith-Waterman score: 1391; 100.0% identity (100.0% similar) in 215 aa overlap (1-215:1-215)

               10        20        30        40        50        60
pF1KB8 MTSRSTARPNGQPQASKICQFKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAAFLTQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS89 MTSRSTARPNGQPQASKICQFKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAAFLTQ
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB8 SVCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNQETFARAKTWVKELQR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS89 SVCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNQETFARAKTWVKELQR
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB8 QASPSIVIALAGNKADLANKRMVEYEEAQAYADDNSLLFMETSAKTAMNVNDLFLAIAKK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS89 QASPSIVIALAGNKADLANKRMVEYEEAQAYADDNSLLFMETSAKTAMNVNDLFLAIAKK
              130       140       150       160       170       180

              190       200       210     
pF1KB8 LPKSEPQNLGGAAGRSRGVDLHEQSQQNKSQCCSN
       :::::::::::::::::::::::::::::::::::
CCDS89 LPKSEPQNLGGAAGRSRGVDLHEQSQQNKSQCCSN
              190       200       210     

>>CCDS11419.1 RAB5C gene_id:5878|Hs108|chr17              (216 aa)
 initn: 1188 init1: 1188 opt: 1190  Z-score: 1404.7  bits: 267.0 E(32554): 6.4e-72
Smith-Waterman score: 1190; 84.3% identity (94.9% similar) in 216 aa overlap (1-215:1-216)

                10        20        30        40        50         
pF1KB8 MTSRS-TARPNGQPQASKICQFKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAAFLT
       :..:. .:::::   ..:::::::::::::::::::::::::::::::::::::::::::
CCDS11 MAGRGGAARPNGPAAGNKICQFKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAAFLT
               10        20        30        40        50        60

      60        70        80        90       100       110         
pF1KB8 QSVCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNQETFARAKTWVKELQ
       :.::::::::::::::::::::::::::::::::::::::::::: .::::::.::::::
CCDS11 QTVCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNTDTFARAKNWVKELQ
               70        80        90       100       110       120

     120       130       140       150       160       170         
pF1KB8 RQASPSIVIALAGNKADLANKRMVEYEEAQAYADDNSLLFMETSAKTAMNVNDLFLAIAK
       :::::.:::::::::::::.:: ::..:::::::::::::::::::::::::..:.::::
CCDS11 RQASPNIVIALAGNKADLASKRAVEFQEAQAYADDNSLLFMETSAKTAMNVNEIFMAIAK
              130       140       150       160       170       180

     180       190       200       210     
pF1KB8 KLPKSEPQNLGGAAGRSRGVDLHEQSQQNKSQCCSN
       ::::.::::  :: ::.:::::.:..  ..::::::
CCDS11 KLPKNEPQNATGAPGRNRGVDLQENNPASRSQCCSN
              190       200       210      

>>CCDS58551.1 RAB5C gene_id:5878|Hs108|chr17              (249 aa)
 initn: 1188 init1: 1188 opt: 1190  Z-score: 1403.8  bits: 267.0 E(32554): 7.1e-72
Smith-Waterman score: 1190; 84.3% identity (94.9% similar) in 216 aa overlap (1-215:34-249)

                                              10        20         
pF1KB8                               MTSRS-TARPNGQPQASKICQFKLVLLGES
                                     :..:. .:::::   ..:::::::::::::
CCDS58 SWRSPSPLSASLHSTSPHPHALWTTTAGRAMAGRGGAARPNGPAAGNKICQFKLVLLGES
            10        20        30        40        50        60   

      30        40        50        60        70        80         
pF1KB8 AVGKSSLVLRFVKGQFHEYQESTIGAAFLTQSVCLDDTTVKFEIWDTAGQERYHSLAPMY
       :::::::::::::::::::::::::::::::.::::::::::::::::::::::::::::
CCDS58 AVGKSSLVLRFVKGQFHEYQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQERYHSLAPMY
            70        80        90       100       110       120   

      90       100       110       120       130       140         
pF1KB8 YRGAQAAIVVYDITNQETFARAKTWVKELQRQASPSIVIALAGNKADLANKRMVEYEEAQ
       ::::::::::::::: .::::::.:::::::::::.:::::::::::::.:: ::..:::
CCDS58 YRGAQAAIVVYDITNTDTFARAKNWVKELQRQASPNIVIALAGNKADLASKRAVEFQEAQ
           130       140       150       160       170       180   

     150       160       170       180       190       200         
pF1KB8 AYADDNSLLFMETSAKTAMNVNDLFLAIAKKLPKSEPQNLGGAAGRSRGVDLHEQSQQNK
       ::::::::::::::::::::::..:.::::::::.::::  :: ::.:::::.:..  ..
CCDS58 AYADDNSLLFMETSAKTAMNVNEIFMAIAKKLPKNEPQNATGAPGRNRGVDLQENNPASR
           190       200       210       220       230       240   

     210     
pF1KB8 SQCCSN
       ::::::
CCDS58 SQCCSN
             

>>CCDS2633.1 RAB5A gene_id:5868|Hs108|chr3                (215 aa)
 initn: 1178 init1: 1178 opt: 1178  Z-score: 1390.7  bits: 264.4 E(32554): 3.8e-71
Smith-Waterman score: 1178; 81.9% identity (95.8% similar) in 215 aa overlap (1-215:1-215)

               10        20        30        40        50        60
pF1KB8 MTSRSTARPNGQPQASKICQFKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAAFLTQ
       :.::...::::   ..:::::::::::::::::::::::::::::::.::::::::::::
CCDS26 MASRGATRPNGPNTGNKICQFKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQ
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB8 SVCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNQETFARAKTWVKELQR
       .:::::::::::::::::::::::::::::::::::::::::::.:.:::::.:::::::
CCDS26 TVCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQR
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB8 QASPSIVIALAGNKADLANKRMVEYEEAQAYADDNSLLFMETSAKTAMNVNDLFLAIAKK
       ::::.:::::.:::::::::: :...:::.::::::::::::::::.::::..:.:::::
CCDS26 QASPNIVIALSGNKADLANKRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIAKK
              130       140       150       160       170       180

              190       200       210     
pF1KB8 LPKSEPQNLGGAAGRSRGVDLHEQSQQNKSQCCSN
       :::.:::: :. ..:.::::: : .: ...:::::
CCDS26 LPKNEPQNPGANSARGRGVDLTEPTQPTRNQCCSN
              190       200       210     

>>CCDS77710.1 RAB5A gene_id:5868|Hs108|chr3               (201 aa)
 initn: 806 init1: 806 opt: 806  Z-score: 955.6  bits: 183.8 E(32554): 6.6e-47
Smith-Waterman score: 1054; 75.8% identity (89.3% similar) in 215 aa overlap (1-215:1-201)

               10        20        30        40        50        60
pF1KB8 MTSRSTARPNGQPQASKICQFKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAAFLTQ
       :.::...::::   ..:::::::::::::::::::::::::::::::.::::::      
CCDS77 MASRGATRPNGPNTGNKICQFKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIG------
               10        20        30        40        50          

               70        80        90       100       110       120
pF1KB8 SVCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNQETFARAKTWVKELQR
               ::::::::::::::::::::::::::::::::::::.:.:::::.:::::::
CCDS77 --------VKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQR
                   60        70        80        90       100      

              130       140       150       160       170       180
pF1KB8 QASPSIVIALAGNKADLANKRMVEYEEAQAYADDNSLLFMETSAKTAMNVNDLFLAIAKK
       ::::.:::::.:::::::::: :...:::.::::::::::::::::.::::..:.:::::
CCDS77 QASPNIVIALSGNKADLANKRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIAKK
        110       120       130       140       150       160      

              190       200       210     
pF1KB8 LPKSEPQNLGGAAGRSRGVDLHEQSQQNKSQCCSN
       :::.:::: :. ..:.::::: : .: ...:::::
CCDS77 LPKNEPQNPGANSARGRGVDLTEPTQPTRNQCCSN
        170       180       190       200 

>>CCDS58244.1 RAB5B gene_id:5869|Hs108|chr12              (174 aa)
 initn: 696 init1: 696 opt: 696  Z-score: 827.8  bits: 159.9 E(32554): 8.7e-40
Smith-Waterman score: 1043; 80.9% identity (80.9% similar) in 215 aa overlap (1-215:1-174)

               10        20        30        40        50        60
pF1KB8 MTSRSTARPNGQPQASKICQFKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAAFLTQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS58 MTSRSTARPNGQPQASKICQFKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAAFLTQ
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB8 SVCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNQETFARAKTWVKELQR
       ::::::::::::::::::::::::::::::::::::::::::::::              
CCDS58 SVCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNQE--------------
               70        80        90       100                    

              130       140       150       160       170       180
pF1KB8 QASPSIVIALAGNKADLANKRMVEYEEAQAYADDNSLLFMETSAKTAMNVNDLFLAIAKK
                                  :::::::::::::::::::::::::::::::::
CCDS58 ---------------------------AQAYADDNSLLFMETSAKTAMNVNDLFLAIAKK
                                   110       120       130         

              190       200       210     
pF1KB8 LPKSEPQNLGGAAGRSRGVDLHEQSQQNKSQCCSN
       :::::::::::::::::::::::::::::::::::
CCDS58 LPKSEPQNLGGAAGRSRGVDLHEQSQQNKSQCCSN
     140       150       160       170    

>>CCDS33497.1 RAB22A gene_id:57403|Hs108|chr20            (194 aa)
 initn: 611 init1: 574 opt: 615  Z-score: 732.3  bits: 142.4 E(32554): 1.8e-34
Smith-Waterman score: 615; 49.0% identity (79.4% similar) in 194 aa overlap (20-213:5-194)

               10        20        30        40        50        60
pF1KB8 MTSRSTARPNGQPQASKICQFKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAAFLTQ
                          ..:. :::...:::::.: :::. .:    . ::::.:.:.
CCDS33                MALRELKVCLLGDTGVGKSSIVWRFVEDSFDPNINPTIGASFMTK
                              10        20        30        40     

               70        80        90       100       110       120
pF1KB8 SVCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNQETFARAKTWVKELQR
       .:  ..   :: :::::::::...::::::::. :::.:::::..:::.  :.:::::..
CCDS33 TVQYQNELHKFLIWDTAGQERFRALAPMYYRGSAAAIIVYDITKEETFSTLKNWVKELRQ
          50        60        70        80        90       100     

              130       140       150       160       170       180
pF1KB8 QASPSIVIALAGNKADLANKRMVEYEEAQAYADDNSLLFMETSAKTAMNVNDLFLAIAKK
       .. :.::.:.:::: :: . : :  ..:. :::.   .:.:::::.:.:.:.::. :...
CCDS33 HGPPNIVVAIAGNKCDLIDVREVMERDAKDYADSIHAIFVETSAKNAININELFIEISRR
         110       120       130       140       150       160     

              190       200       210     
pF1KB8 LPKSEPQNLGGAAGRSRGVDLHEQSQQNKSQCCSN
       .:...  ::   .: ..:  :..: .. : .::  
CCDS33 IPSTDA-NL--PSG-GKGFKLRRQPSEPKRSCC  
         170           180       190      

>>CCDS45826.1 RAB31 gene_id:11031|Hs108|chr18             (195 aa)
 initn: 581 init1: 557 opt: 586  Z-score: 698.3  bits: 136.1 E(32554): 1.4e-32
Smith-Waterman score: 586; 45.4% identity (76.5% similar) in 196 aa overlap (18-213:4-195)

               10        20        30        40        50        60
pF1KB8 MTSRSTARPNGQPQASKICQFKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAAFLTQ
                        : ..:. :::...:::::.: :::. .: .    ::::.:.:.
CCDS45               MMAIRELKVCLLGDTGVGKSSIVCRFVQDHFDHNISPTIGASFMTK
                             10        20        30        40      

               70        80        90       100       110       120
pF1KB8 SVCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNQETFARAKTWVKELQR
       .:   .   :: :::::::::.::::::::::. ::..:::::.:..:   : :::::..
CCDS45 TVPCGNELHKFLIWDTAGQERFHSLAPMYYRGSAAAVIVYDITKQDSFYTLKKWVKELKE
         50        60        70        80        90       100      

              130       140       150       160       170       180
pF1KB8 QASPSIVIALAGNKADLANKRMVEYEEAQAYADDNSLLFMETSAKTAMNVNDLFLAIAKK
       ..  .::.:.:::: ::.. : :  ..:. ::.. . . .:::::.:.:...:: .:...
CCDS45 HGPENIVMAIAGNKCDLSDIREVPLKDAKEYAESIGAIVVETSAKNAINIEELFQGISRQ
        110       120       130       140       150       160      

              190       200       210     
pF1KB8 LPKSEPQNLGGAAGRSRGVDLHEQSQQNKSQCCSN
       .:  .:.. .:  :    . ... ..: . .::  
CCDS45 IPPLDPHE-NGNNGT---IKVEKPTMQASRRCC  
        170        180          190       

>>CCDS2520.1 RAB17 gene_id:64284|Hs108|chr2               (212 aa)
 initn: 455 init1: 267 opt: 559  Z-score: 666.2  bits: 130.3 E(32554): 8.7e-31
Smith-Waterman score: 559; 41.2% identity (76.8% similar) in 211 aa overlap (6-215:7-212)

                10        20        30        40        50         
pF1KB8  MTSRSTARPNGQPQASKICQFKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAAFLT
             : .: . :.  ..  ::::::: ..::::::.::.::..:.     :.: ::.:
CCDS25 MAQAHRTPQPRAAPSQPRV--FKLVLLGSGSVGKSSLALRYVKNDFKSILP-TVGCAFFT
               10          20        30        40         50       

      60        70        80        90       100       110         
pF1KB8 QSVCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNQETFARAKTWVKELQ
       . : .  :..:.:::::::::.:::.  .:.:::.::..::::: ...: .:. :.:.:.
CCDS25 KVVDVGATSLKLEIWDTAGQEKYHSVCHLYFRGANAALLVYDITRKDSFLKAQQWLKDLE
        60        70        80        90       100       110       

     120        130       140       150       160       170        
pF1KB8 RQASPS-IVIALAGNKADLANKRMVEYEEAQAYADDNSLLFMETSAKTAMNVNDLFLAIA
       ..  :. ... :.:::.::...: : ..:.. .::...:::::::::   .:...: ..:
CCDS25 EELHPGEVLVMLVGNKTDLSQEREVTFQEGKEFADSQKLLFMETSAKLNHQVSEVFNTVA
       120       130       140       150       160       170       

      180       190       200       210     
pF1KB8 KKLPKSEPQNLGGAAGRSRGVDLHEQSQQNKSQCCSN
       ..: .   ..  : : :. ..   ...   ...::..
CCDS25 QELLQRSDEE--GQALRGDAAVALNKGPARQAKCCAH
       180         190       200       210  

>>CCDS46306.1 RAB1A gene_id:5861|Hs108|chr2               (205 aa)
 initn: 532 init1: 514 opt: 537  Z-score: 640.7  bits: 125.6 E(32554): 2.3e-29
Smith-Waterman score: 537; 43.4% identity (75.5% similar) in 196 aa overlap (21-213:12-205)

               10        20        30        40        50        60
pF1KB8 MTSRSTARPNGQPQASKICQFKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAAFLTQ
                           :::.:.:.:.:::: :.:::.   . :   ::::. :  .
CCDS46          MSSMNPEYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIR
                        10        20        30        40        50 

               70        80        90       100       110       120
pF1KB8 SVCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNQETFARAKTWVKELQR
       .. ::  :.:..:::::::::.....  :::::.. :::::.:.::.:  .: :..:..:
CCDS46 TIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDR
              60        70        80        90       100       110 

              130       140       150       160       170       180
pF1KB8 QASPSIVIALAGNKADLANKRMVEYEEAQAYADDNSLLFMETSAKTAMNVNDLFLAIAKK
        :: ..   :.::: ::..:..:.:  :. .::. .. :.:::::.: ::.. :...: .
CCDS46 YASENVNKLLVGNKCDLTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTMAAE
             120       130       140       150       160       170 

              190       200          210     
pF1KB8 LPKSEPQNLGGAAGRSRGVDLHEQS---QQNKSQCCSN
       . :   .. :..:: ..  ... ::   .:. . ::  
CCDS46 IKKR--MGPGATAGGAEKSNVKIQSTPVKQSGGGCC  
               180       190       200       




215 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 11:48:34 2016 done: Fri Nov  4 11:48:35 2016
 Total Scan time:  1.600 Total Display time:  0.000

Function used was FASTA [36.3.4 Apr, 2011]
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