Result of FASTA (ccds) for
pF1KB8273
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB8273, 277 aa
1>>>pF1KB8273 277 - 277 aa - 277 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 5.4462+/-0.000933; mu= 13.4910+/- 0.055
mean_var=60.4508+/-12.054, 0's: 0 Z-trim(104.6): 28 B-trim: 210 in 1/48
Lambda= 0.164958
statistics sampled from 7979 (8005) to 7979 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.627), E-opt: 0.2 (0.246), width: 16
Scan time: 1.570
The best scores are: opt bits E(32554)
CCDS6855.1 PSMB7 gene_id:5695|Hs108|chr9 ( 277) 1801 437.2 6.2e-123
CCDS10853.1 PSMB10 gene_id:5699|Hs108|chr16 ( 273) 1086 267.0 1e-71
CCDS11056.1 PSMB6 gene_id:5694|Hs108|chr17 ( 239) 342 90.0 1.8e-18
CCDS4759.1 PSMB9 gene_id:5698|Hs108|chr6 ( 219) 316 83.8 1.2e-16
CCDS41923.1 PSMB11 gene_id:122706|Hs108|chr14 ( 300) 314 83.3 2.2e-16
CCDS73944.1 PSMB6 gene_id:5694|Hs108|chr17 ( 213) 309 82.1 3.8e-16
CCDS9584.1 PSMB5 gene_id:5693|Hs108|chr14 ( 263) 294 78.5 5.4e-15
CCDS4756.1 PSMB8 gene_id:5696|Hs108|chr6 ( 272) 284 76.2 2.9e-14
CCDS4757.1 PSMB8 gene_id:5696|Hs108|chr6 ( 276) 284 76.2 2.9e-14
>>CCDS6855.1 PSMB7 gene_id:5695|Hs108|chr9 (277 aa)
initn: 1801 init1: 1801 opt: 1801 Z-score: 2320.6 bits: 437.2 E(32554): 6.2e-123
Smith-Waterman score: 1801; 100.0% identity (100.0% similar) in 277 aa overlap (1-277:1-277)
10 20 30 40 50 60
pF1KB8 MAAVSVYAPPVGGFSFDNCRRNAVLEADFAKRGYKLPKVRKTGTTIAGVVYKDGIVLGAD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS68 MAAVSVYAPPVGGFSFDNCRRNAVLEADFAKRGYKLPKVRKTGTTIAGVVYKDGIVLGAD
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB8 TRATEGMVVADKNCSKIHFISPNIYCCGAGTAADTDMTTQLISSNLELHSLSTGRLPRVV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS68 TRATEGMVVADKNCSKIHFISPNIYCCGAGTAADTDMTTQLISSNLELHSLSTGRLPRVV
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB8 TANRMLKQMLFRYQGYIGAALVLGGVDVTGPHLYSIYPHGSTDKLPYVTMGSGSLAAMAV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS68 TANRMLKQMLFRYQGYIGAALVLGGVDVTGPHLYSIYPHGSTDKLPYVTMGSGSLAAMAV
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB8 FEDKFRPDMEEEEAKNLVSEAIAAGIFNDLGSGSNIDLCVISKNKLDFLRPYTVPNKKGT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS68 FEDKFRPDMEEEEAKNLVSEAIAAGIFNDLGSGSNIDLCVISKNKLDFLRPYTVPNKKGT
190 200 210 220 230 240
250 260 270
pF1KB8 RLGRYRCEKGTTAVLTEKITPLEIEVLEETVQTMDTS
:::::::::::::::::::::::::::::::::::::
CCDS68 RLGRYRCEKGTTAVLTEKITPLEIEVLEETVQTMDTS
250 260 270
>>CCDS10853.1 PSMB10 gene_id:5699|Hs108|chr16 (273 aa)
initn: 1116 init1: 987 opt: 1086 Z-score: 1401.1 bits: 267.0 E(32554): 1e-71
Smith-Waterman score: 1086; 58.3% identity (86.5% similar) in 266 aa overlap (10-275:8-271)
10 20 30 40 50 60
pF1KB8 MAAVSVYAPPVGGFSFDNCRRNAVLEADFAKRGYKLPKVRKTGTTIAGVVYKDGIVLGAD
: :::::.::.::: :: . : :.:..:::::::::.:..::..::::
CCDS10 MLKPALEPRGGFSFENCQRNASLERVLP--GLKVPHARKTGTTIAGLVFQDGVILGAD
10 20 30 40 50
70 80 90 100 110 120
pF1KB8 TRATEGMVVADKNCSKIHFISPNIYCCGAGTAADTDMTTQLISSNLELHSLSTGRLPRVV
::::. :::::.: :::::.:.:::::::.:::..:::....:..:::.::::: :::.
CCDS10 TRATNDSVVADKSCEKIHFIAPKIYCCGAGVAADAEMTTRMVASKMELHALSTGREPRVA
60 70 80 90 100 110
130 140 150 160 170 180
pF1KB8 TANRMLKQMLFRYQGYIGAALVLGGVDVTGPHLYSIYPHGSTDKLPYVTMGSGSLAAMAV
:..:.:.: ::::::..::.:..::::.:::.::...:::: ..::....:::. ::.::
CCDS10 TVTRILRQTLFRYQGHVGASLIVGGVDLTGPQLYGVHPHGSYSRLPFTALGSGQDAALAV
120 130 140 150 160 170
190 200 210 220 230 240
pF1KB8 FEDKFRPDMEEEEAKNLVSEAIAAGIFNDLGSGSNIDLCVISKNKLDFLRPYTVPNKKGT
.::.:.:.: : :..:. ::..:::..:::::.:.: :::.:. .:: . :..
CCDS10 LEDRFQPNMTLEAAQGLLVEAVTAGILGDLGSGGNVDACVITKTGAKLLRTLSSPTEPVK
180 190 200 210 220 230
250 260 270
pF1KB8 RLGRYRCEKGTTAVLTEKITPLEIEVLEETVQTMDTS
: :::. :::::::. . :: .:..:::::.:.
CCDS10 RSGRYHFVPGTTAVLTQTVKPLTLELVEETVQAMEVE
240 250 260 270
>>CCDS11056.1 PSMB6 gene_id:5694|Hs108|chr17 (239 aa)
initn: 336 init1: 259 opt: 342 Z-score: 445.1 bits: 90.0 E(32554): 1.8e-18
Smith-Waterman score: 342; 32.1% identity (65.2% similar) in 187 aa overlap (42-227:33-219)
20 30 40 50 60 70
pF1KB8 GGFSFDNCRRNAVLEADFAKRGYKLPKVRKTGTTIAGVVYKDGIVLGADTRATEGMVVAD
::::: .: . :.:::::.:.: : .:.
CCDS11 ATLLAARGAGPAPAWGPEAFTPDWESREVSTGTTIMAVQFDGGVVLGADSRTTTGSYIAN
10 20 30 40 50 60
80 90 100 110 120 130
pF1KB8 KNCSKIHFISPNIYCCGAGTAADTDMTTQLISSNLELHSLSTGRLPRVVTANRMLKQMLF
. .:. : :.:: .:.::::. ... .. .: .::. .. : : :: ..:.: .
CCDS11 RVTDKLTPIHDRIFCCRSGSAADTQAVADAVTYQLGFHSIELNEPPLVHTAASLFKEMCY
70 80 90 100 110 120
140 150 160 170 180 190
pF1KB8 RYQGYIGAALVLGGVDVT-GPHLYSIYPHGSTDKLPYVTMGSGSLAAMAVFEDKFRPDME
::. . :.....: : : ..::. : . .. :::: .. . .: :
CCDS11 RYREDLMAGIIIAGWDPQEGGQVYSVPMGGMMVRQSFAIGGSGSSYIYGYVDATYREGMT
130 140 150 160 170 180
200 210 220 230 240 250
pF1KB8 EEEAKNLVSEAIAAGIFNDLGSGSNIDLCVISKNKLDFLRPYTVPNKKGTRLGRYRCEKG
.:: .....:.: .. : .::. : : .:... ..
CCDS11 KEECLQFTANALALAMERDGSSGGVIRLAAIAESGVERQVLLGDQIPKFAVATLPPA
190 200 210 220 230
260 270
pF1KB8 TTAVLTEKITPLEIEVLEETVQTMDTS
>>CCDS4759.1 PSMB9 gene_id:5698|Hs108|chr6 (219 aa)
initn: 326 init1: 302 opt: 316 Z-score: 412.3 bits: 83.8 E(32554): 1.2e-16
Smith-Waterman score: 316; 29.2% identity (64.6% similar) in 195 aa overlap (36-227:11-204)
10 20 30 40 50 60
pF1KB8 VYAPPVGGFSFDNCRRNAVLEADFAKRGYKLPKVRK--TGTTIAGVVYKDGIVLGADTRA
::.. . ::::: .: . :.:.:.:.:.
CCDS47 MLRAGAPTGDLPRAGEVHTGTTIMAVEFDGGVVMGSDSRV
10 20 30 40
70 80 90 100 110 120
pF1KB8 TEGMVVADKNCSKIHFISPNIYCCGAGTAADTDMTTQLISSNLELHSLSTGRLPRVVTAN
. : .:... .:. . ::: .:.:::.. .... . .::::.. . : :..:
CCDS47 SAGEAVVNRVFDKLSPLHERIYCALSGSAADAQAVADMAAYQLELHGIELEEPPLVLAAA
50 60 70 80 90 100
130 140 150 160 170 180
pF1KB8 RMLKQMLFRYQGYIGAALVLGGVDVT-GPHLYSIYPHGSTDKLPYVTMGSGSLAAMAVFE
..... ..:. ..: :...: : : ..:. : . :.. :::: .. .
CCDS47 NVVRNISYKYREDLSAHLMVAGWDQREGGQVYGTLG-GMLTRQPFAIGGSGSTFIYGYVD
110 120 130 140 150
190 200 210 220 230 240
pF1KB8 DKFRPDMEEEEAKNLVSEAIAAGIFNDLGSGSNIDLCVISKNKLDFLRPYTVPNKKGTRL
..: : :: . ....::: .. : .::. : : .:. .:
CCDS47 AAYKPGMSPEECRRFTTDAIALAMSRDGSSGGVIYLVTITAAGVDHRVILGNELPKFYDE
160 170 180 190 200 210
250 260 270
pF1KB8 GRYRCEKGTTAVLTEKITPLEIEVLEETVQTMDTS
>>CCDS41923.1 PSMB11 gene_id:122706|Hs108|chr14 (300 aa)
initn: 312 init1: 166 opt: 314 Z-score: 407.5 bits: 83.3 E(32554): 2.2e-16
Smith-Waterman score: 314; 29.6% identity (59.3% similar) in 216 aa overlap (5-218:18-225)
10 20 30 40
pF1KB8 MAAVSVYAPPVGGFSFD-NCRRNAVLEADFAKRGYKLPKVRKTGTTI
: . : .::.. .: .. :. .: .: . :::
CCDS41 MALQDVCKWQSPDTQGPSPHLPRAGGWAVPRGCDPQTFLQI----HGPRLAH----GTTT
10 20 30 40 50
50 60 70 80 90 100
pF1KB8 AGVVYKDGIVLGADTRATEGMVVADKNCSKIHFISPNIYCCGAGTAADTDMTTQLISSNL
. .. :.. .::::.. : :: :. . .. .::.:: .... .:
CCDS41 LAFRFRHGVIAAADTRSSCGSYVACPASCKVIPVHQHLLGTTSGTSADCATWYRVLQREL
60 70 80 90 100 110
110 120 130 140 150 160
pF1KB8 ELHSLSTGRLPRVVTANRMLKQMLFRYQGY-IGAALVLGGVDVTGPHLYSIYPHGSTDKL
.:. : :.:: :..: ..:. :. .:.: . .: .: : : .::.:. .: :. .
CCDS41 RLRELREGQLPSVASAAKLLSAMMSQYRGLDLCVATALCGWDRSGPELFYVYSDGTRLQG
120 130 140 150 160 170
170 180 190 200 210 220
pF1KB8 PYVTMGSGSLAAMAVFEDKFRPDMEEEEAKNLVSEAIAAGIFNDLGSGSNIDLCVISKNK
..:::: :..:.. .: :: .:: :. :.: . : ::...::
CCDS41 DIFSVGSGSPYAYGVLDRGYRYDMSTQEAYALARCAVAHATHRDAYSGGSVDLFHVRESG
180 190 200 210 220 230
230 240 250 260 270
pF1KB8 LDFLRPYTVPNKKGTRLGRYRCEKGTTAVLTEKITPLEIEVLEETVQTMDTS
CCDS41 WEHVSRSDACVLYVELQKLLEPEPEEDASHAHPEPATAHRAAEDRELSVGPGEVTPGDSR
240 250 260 270 280 290
>>CCDS73944.1 PSMB6 gene_id:5694|Hs108|chr17 (213 aa)
initn: 284 init1: 240 opt: 309 Z-score: 403.5 bits: 82.1 E(32554): 3.8e-16
Smith-Waterman score: 309; 32.9% identity (64.6% similar) in 161 aa overlap (42-201:33-193)
20 30 40 50 60 70
pF1KB8 GGFSFDNCRRNAVLEADFAKRGYKLPKVRKTGTTIAGVVYKDGIVLGADTRATEGMVVAD
::::: .: . :.:::::.:.: : .:.
CCDS73 ATLLAARGAGPAPAWGPEAFTPDWESREVSTGTTIMAVQFDGGVVLGADSRTTTGSYIAN
10 20 30 40 50 60
80 90 100 110 120 130
pF1KB8 KNCSKIHFISPNIYCCGAGTAADTDMTTQLISSNLELHSLSTGRLPRVVTANRMLKQMLF
. .:. : :.:: .:.::::. ... .. .: .::. .. : : :: ..:.: .
CCDS73 RVTDKLTPIHDRIFCCRSGSAADTQAVADAVTYQLGFHSIELNEPPLVHTAASLFKEMCY
70 80 90 100 110 120
140 150 160 170 180 190
pF1KB8 RYQGYIGAALVLGGVDVT-GPHLYSIYPHGSTDKLPYVTMGSGSLAAMAVFEDKFRPDME
::. . :.....: : : ..::. : . .. :::: .. . .: :
CCDS73 RYREDLMAGIIIAGWDPQEGGQVYSVPMGGMMVRQSFAIGGSGSSYIYGYVDATYREGMT
130 140 150 160 170 180
200 210 220 230 240 250
pF1KB8 EEEAKNLVSEAIAAGIFNDLGSGSNIDLCVISKNKLDFLRPYTVPNKKGTRLGRYRCEKG
.:: .....:
CCDS73 KEECLQFTANAFFFYPQLSLWPWSGMAPVEE
190 200 210
>>CCDS9584.1 PSMB5 gene_id:5693|Hs108|chr14 (263 aa)
initn: 232 init1: 125 opt: 294 Z-score: 382.7 bits: 78.5 E(32554): 5.4e-15
Smith-Waterman score: 294; 28.8% identity (65.5% similar) in 177 aa overlap (43-218:59-235)
20 30 40 50 60 70
pF1KB8 GFSFDNCRRNAVLEADFAKRGYKLPKVRKTGTTIAGVVYKDGIVLGADTRATEGMVVADK
::: . .. :....::.::: : .:..
CCDS95 DLGPGSLSDGLSLAAPGWGVPEEPGIEMLHGTTTLAFKFRHGVIVAADSRATAGAYIASQ
30 40 50 60 70 80
80 90 100 110 120 130
pF1KB8 NCSKIHFISPNIYCCGAGTAADTDMTTQLISSNLELHSLSTGRLPRVVTANRMLKQMLFR
. .:. :.: . :: ::: .. .:.. . ... : . . :..:...: .:...
CCDS95 TVKKVIEINPYLLGTMAGGAADCSFWERLLARQCRIYELRNKERISVAAASKLLANMVYQ
90 100 110 120 130 140
140 150 160 170 180 190
pF1KB8 YQGY-IGAALVLGGVDVTGPHLYSIYPHGSTDKLPYVTMGSGSLAAMAVFEDKFRPDMEE
:.:. .. . .. : : :: :: . .:. . ..::::. :..:.. . :.:
CCDS95 YKGMGLSMGTMICGWDKRGPGLYYVDSEGNRISGATFSVGSGSVYAYGVMDRGYSYDLEV
150 160 170 180 190 200
200 210 220 230 240 250
pF1KB8 EEAKNLVSEAIAAGIFNDLGSGSNIDLCVISKNKLDFLRPYTVPNKKGTRLGRYRCEKGT
:.: .:. .:: . . : ::. ..:
CCDS95 EQAYDLARRAIYQATYRDAYSGGAVNLYHVREDGWIRVSSDNVADLHEKYSGSTP
210 220 230 240 250 260
>>CCDS4756.1 PSMB8 gene_id:5696|Hs108|chr6 (272 aa)
initn: 240 init1: 137 opt: 284 Z-score: 369.6 bits: 76.2 E(32554): 2.9e-14
Smith-Waterman score: 284; 28.7% identity (63.5% similar) in 178 aa overlap (43-218:68-244)
20 30 40 50 60 70
pF1KB8 GFSFDNCRRNAVLEADFAKRGYKLPKVRKTGTTIAGVVYKDGIVLGADTRATEGMVVADK
::: . .. :.. ..:.::. : ..
CCDS47 SSGCPGLEPTEFFQSLGGDGERNVQIEMAHGTTTLAFKFQHGVIAAVDSRASAGSYISAL
40 50 60 70 80 90
80 90 100 110 120 130
pF1KB8 NCSKIHFISPNIYCCGAGTAADTDMTTQLISSNLELHSLSTGRLPRVVTANRMLKQMLFR
.:. :.: . .: ::: .. .:.... .:. : .:. : .:...:..:. .
CCDS47 RVNKVIEINPYLLGTMSGCAADCQYWERLLAKECRLYYLRNGERISVSAASKLLSNMMCQ
100 110 120 130 140 150
140 150 160 170 180 190
pF1KB8 YQGYIGAAL--VLGGVDVTGPHLYSIYPHGSTDKLPYVTMGSGSLAAMAVFEDKFRPDME
:.: .: .. .. : : :: :: . ::. . . . :::. :..:... .::..
CCDS47 YRG-MGLSMGSMICGWDKKGPGLYYVDEHGTRLSGNMFSTGSGNTYAYGVMDSGYRPNLS
160 170 180 190 200 210
200 210 220 230 240 250
pF1KB8 EEEAKNLVSEAIAAGIFNDLGSGSNIDLCVISKNKLDFLRPYTVPNKKGTRLGRYRCEKG
::: .: .::: . : ::. ...
CCDS47 PEEAYDLGRRAIAYATHRDSYSGGVVNMYHMKEDGWVKVESTDVSDLLHQYREANQ
220 230 240 250 260 270
>>CCDS4757.1 PSMB8 gene_id:5696|Hs108|chr6 (276 aa)
initn: 217 init1: 137 opt: 284 Z-score: 369.5 bits: 76.2 E(32554): 2.9e-14
Smith-Waterman score: 284; 28.7% identity (63.5% similar) in 178 aa overlap (43-218:72-248)
20 30 40 50 60 70
pF1KB8 GFSFDNCRRNAVLEADFAKRGYKLPKVRKTGTTIAGVVYKDGIVLGADTRATEGMVVADK
::: . .. :.. ..:.::. : ..
CCDS47 LALPRGMQPTEFFQSLGGDGERNVQIEMAHGTTTLAFKFQHGVIAAVDSRASAGSYISAL
50 60 70 80 90 100
80 90 100 110 120 130
pF1KB8 NCSKIHFISPNIYCCGAGTAADTDMTTQLISSNLELHSLSTGRLPRVVTANRMLKQMLFR
.:. :.: . .: ::: .. .:.... .:. : .:. : .:...:..:. .
CCDS47 RVNKVIEINPYLLGTMSGCAADCQYWERLLAKECRLYYLRNGERISVSAASKLLSNMMCQ
110 120 130 140 150 160
140 150 160 170 180 190
pF1KB8 YQGYIGAAL--VLGGVDVTGPHLYSIYPHGSTDKLPYVTMGSGSLAAMAVFEDKFRPDME
:.: .: .. .. : : :: :: . ::. . . . :::. :..:... .::..
CCDS47 YRG-MGLSMGSMICGWDKKGPGLYYVDEHGTRLSGNMFSTGSGNTYAYGVMDSGYRPNLS
170 180 190 200 210 220
200 210 220 230 240 250
pF1KB8 EEEAKNLVSEAIAAGIFNDLGSGSNIDLCVISKNKLDFLRPYTVPNKKGTRLGRYRCEKG
::: .: .::: . : ::. ...
CCDS47 PEEAYDLGRRAIAYATHRDSYSGGVVNMYHMKEDGWVKVESTDVSDLLHQYREANQ
230 240 250 260 270
277 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Fri Nov 4 11:17:20 2016 done: Fri Nov 4 11:17:20 2016
Total Scan time: 1.570 Total Display time: -0.010
Function used was FASTA [36.3.4 Apr, 2011]