Result of FASTA (ccds) for pF1KB8258
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB8258, 239 aa
  1>>>pF1KB8258 239 - 239 aa - 239 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 4.7852+/-0.000732; mu= 16.9112+/- 0.044
 mean_var=56.7536+/-11.254, 0's: 0 Z-trim(108.1): 21  B-trim: 2 in 1/51
 Lambda= 0.170246
 statistics sampled from 9958 (9978) to 9958 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.683), E-opt: 0.2 (0.307), width:  16
 Scan time:  1.870

The best scores are:                                      opt bits E(32554)
CCDS11056.1 PSMB6 gene_id:5694|Hs108|chr17         ( 239) 1583 396.6 7.8e-111
CCDS73944.1 PSMB6 gene_id:5694|Hs108|chr17         ( 213) 1299 326.8 7.1e-90
CCDS4759.1 PSMB9 gene_id:5698|Hs108|chr6           ( 219)  879 223.6 8.2e-59
CCDS41923.1 PSMB11 gene_id:122706|Hs108|chr14      ( 300)  354 94.8   7e-20
CCDS9584.1 PSMB5 gene_id:5693|Hs108|chr14          ( 263)  343 92.0 4.1e-19
CCDS6855.1 PSMB7 gene_id:5695|Hs108|chr9           ( 277)  342 91.8   5e-19
CCDS4756.1 PSMB8 gene_id:5696|Hs108|chr6           ( 272)  331 89.1 3.2e-18
CCDS4757.1 PSMB8 gene_id:5696|Hs108|chr6           ( 276)  331 89.1 3.3e-18
CCDS10853.1 PSMB10 gene_id:5699|Hs108|chr16        ( 273)  328 88.3 5.4e-18


>>CCDS11056.1 PSMB6 gene_id:5694|Hs108|chr17              (239 aa)
 initn: 1583 init1: 1583 opt: 1583  Z-score: 2103.3  bits: 396.6 E(32554): 7.8e-111
Smith-Waterman score: 1583; 100.0% identity (100.0% similar) in 239 aa overlap (1-239:1-239)

               10        20        30        40        50        60
pF1KB8 MAATLLAARGAGPAPAWGPEAFTPDWESREVSTGTTIMAVQFDGGVVLGADSRTTTGSYI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 MAATLLAARGAGPAPAWGPEAFTPDWESREVSTGTTIMAVQFDGGVVLGADSRTTTGSYI
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB8 ANRVTDKLTPIHDRIFCCRSGSAADTQAVADAVTYQLGFHSIELNEPPLVHTAASLFKEM
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 ANRVTDKLTPIHDRIFCCRSGSAADTQAVADAVTYQLGFHSIELNEPPLVHTAASLFKEM
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB8 CYRYREDLMAGIIIAGWDPQEGGQVYSVPMGGMMVRQSFAIGGSGSSYIYGYVDATYREG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 CYRYREDLMAGIIIAGWDPQEGGQVYSVPMGGMMVRQSFAIGGSGSSYIYGYVDATYREG
              130       140       150       160       170       180

              190       200       210       220       230         
pF1KB8 MTKEECLQFTANALALAMERDGSSGGVIRLAAIAESGVERQVLLGDQIPKFAVATLPPA
       :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 MTKEECLQFTANALALAMERDGSSGGVIRLAAIAESGVERQVLLGDQIPKFAVATLPPA
              190       200       210       220       230         

>>CCDS73944.1 PSMB6 gene_id:5694|Hs108|chr17              (213 aa)
 initn: 1299 init1: 1299 opt: 1299  Z-score: 1727.0  bits: 326.8 E(32554): 7.1e-90
Smith-Waterman score: 1299; 99.5% identity (100.0% similar) in 194 aa overlap (1-194:1-194)

               10        20        30        40        50        60
pF1KB8 MAATLLAARGAGPAPAWGPEAFTPDWESREVSTGTTIMAVQFDGGVVLGADSRTTTGSYI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS73 MAATLLAARGAGPAPAWGPEAFTPDWESREVSTGTTIMAVQFDGGVVLGADSRTTTGSYI
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB8 ANRVTDKLTPIHDRIFCCRSGSAADTQAVADAVTYQLGFHSIELNEPPLVHTAASLFKEM
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS73 ANRVTDKLTPIHDRIFCCRSGSAADTQAVADAVTYQLGFHSIELNEPPLVHTAASLFKEM
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB8 CYRYREDLMAGIIIAGWDPQEGGQVYSVPMGGMMVRQSFAIGGSGSSYIYGYVDATYREG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS73 CYRYREDLMAGIIIAGWDPQEGGQVYSVPMGGMMVRQSFAIGGSGSSYIYGYVDATYREG
              130       140       150       160       170       180

              190       200       210       220       230         
pF1KB8 MTKEECLQFTANALALAMERDGSSGGVIRLAAIAESGVERQVLLGDQIPKFAVATLPPA
       :::::::::::::.                                             
CCDS73 MTKEECLQFTANAFFFYPQLSLWPWSGMAPVEE                          
              190       200       210                             

>>CCDS4759.1 PSMB9 gene_id:5698|Hs108|chr6                (219 aa)
 initn: 877 init1: 518 opt: 879  Z-score: 1169.3  bits: 223.6 E(32554): 8.2e-59
Smith-Waterman score: 879; 62.4% identity (89.1% similar) in 202 aa overlap (30-231:16-216)

               10        20        30        40        50        60
pF1KB8 MAATLLAARGAGPAPAWGPEAFTPDWESREVSTGTTIMAVQFDGGVVLGADSRTTTGSYI
                                    :: ::::::::.::::::.:.:::...:  .
CCDS47               MLRAGAPTGDLPRAGEVHTGTTIMAVEFDGGVVMGSDSRVSAGEAV
                             10        20        30        40      

               70        80        90       100       110       120
pF1KB8 ANRVTDKLTPIHDRIFCCRSGSAADTQAVADAVTYQLGFHSIELNEPPLVHTAASLFKEM
       .::: :::.:.:.::.:  ::::::.::::: ..::: .:.:::.::::: .::.. ...
CCDS47 VNRVFDKLSPLHERIYCALSGSAADAQAVADMAAYQLELHGIELEEPPLVLAAANVVRNI
         50        60        70        80        90       100      

              130       140       150       160       170       180
pF1KB8 CYRYREDLMAGIIIAGWDPQEGGQVYSVPMGGMMVRQSFAIGGSGSSYIYGYVDATYREG
        :.::::: : ...:::: .::::::.. .:::..:: ::::::::..:::::::.:. :
CCDS47 SYKYREDLSAHLMVAGWDQREGGQVYGT-LGGMLTRQPFAIGGSGSTFIYGYVDAAYKPG
        110       120       130        140       150       160     

              190       200       210       220       230         
pF1KB8 MTKEECLQFTANALALAMERDGSSGGVIRLAAIAESGVERQVLLGDQIPKFAVATLPPA
       :. ::: .::..:.:::: ::::::::: :..:. .::...:.::...:::        
CCDS47 MSPEECRRFTTDAIALAMSRDGSSGGVIYLVTITAAGVDHRVILGNELPKFYDE     
         170       180       190       200       210              

>>CCDS41923.1 PSMB11 gene_id:122706|Hs108|chr14           (300 aa)
 initn: 332 init1: 305 opt: 354  Z-score: 470.4  bits: 94.8 E(32554): 7e-20
Smith-Waterman score: 354; 32.7% identity (60.7% similar) in 214 aa overlap (9-219:23-234)

                             10          20        30        40    
pF1KB8               MAATLLAARGAGPAPAWG--PEAFTPDWESREVSTGTTIMAVQFDG
                             :..: :   :  :..:      : .. ::: .: .:  
CCDS41 MALQDVCKWQSPDTQGPSPHLPRAGGWAVPRGCDPQTFLQIHGPR-LAHGTTTLAFRFRH
               10        20        30        40         50         

           50        60        70        80        90       100    
pF1KB8 GVVLGADSRTTTGSYIANRVTDKLTPIHDRIFCCRSGSAADTQAVADAVTYQLGFHSIEL
       ::. .::.:.. :::.:  .. :. :.:....   ::..::  .   ..  .: .. .. 
CCDS41 GVIAAADTRSSCGSYVACPASCKVIPVHQHLLGTTSGTSADCATWYRVLQRELRLRELRE
      60        70        80        90       100       110         

          110       120        130       140       150       160   
pF1KB8 NEPPLVHTAASLFKEMCYRYRE-DLMAGIIIAGWDPQEGGQVYSVPMGGMMVRQSFAIGG
       .. : : .::.:.. :  .::  :: ..  . ::: . : ... :   :  .. ..   :
CCDS41 GQLPSVASAAKLLSAMMSQYRGLDLCVATALCGWD-RSGPELFYVYSDGTRLQGDIFSVG
     120       130       140       150        160       170        

           170       180       190       200       210       220   
pF1KB8 SGSSYIYGYVDATYREGMTKEECLQFTANALALAMERDGSSGGVIRLAAIAESGVERQVL
       ::: : :: .:  ::  :. .:   ..  :.: : .::. ::: . :  . ::: :    
CCDS41 SGSPYAYGVLDRGYRYDMSTQEAYALARCAVAHATHRDAYSGGSVDLFHVRESGWEHVSR
      180       190       200       210       220       230        

           230                                                     
pF1KB8 LGDQIPKFAVATLPPA                                            
                                                                   
CCDS41 SDACVLYVELQKLLEPEPEEDASHAHPEPATAHRAAEDRELSVGPGEVTPGDSRMPAGTE
      240       250       260       270       280       290        

>>CCDS9584.1 PSMB5 gene_id:5693|Hs108|chr14               (263 aa)
 initn: 318 init1: 262 opt: 343  Z-score: 456.7  bits: 92.0 E(32554): 4.1e-19
Smith-Waterman score: 343; 32.2% identity (60.0% similar) in 205 aa overlap (14-217:43-242)

                                10        20        30        40   
pF1KB8                  MAATLLAARGAGPAPAWGPEAFTPDWESREVSTGTTIMAVQFD
                                     ::.::    .:.  . :.  ::: .: .: 
CCDS95 VNQRGFFGLGGRADLLDLGPGSLSDGLSLAAPGWG----VPEEPGIEMLHGTTTLAFKFR
             20        30        40            50        60        

            50        60        70        80        90       100   
pF1KB8 GGVVLGADSRTTTGSYIANRVTDKLTPIHDRIFCCRSGSAADTQAVADAVTYQLGFHSIE
        ::...::::.:.:.:::.... :.  :.  ..   .:.::: .     .. :  .. ..
CCDS95 HGVIVAADSRATAGAYIASQTVKKVIEINPYLLGTMAGGAADCSFWERLLARQCRIYELR
       70        80        90       100       110       120        

           110       120        130       140       150       160  
pF1KB8 LNEPPLVHTAASLFKEMCYRYR-EDLMAGIIIAGWDPQEGGQVYSVPMGGMMVRQSFAIG
        .:   : .:..:. .: :.:.   :  : .: ::: .  :  :    :. .   .:..:
CCDS95 NKERISVAAASKLLANMVYQYKGMGLSMGTMICGWDKRGPGLYYVDSEGNRISGATFSVG
      130       140       150       160       170       180        

            170       180       190       200       210       220  
pF1KB8 GSGSSYIYGYVDATYREGMTKEECLQFTANALALAMERDGSSGGVIRLAAIAESGVERQV
        ::: : :: .:  :   .  :.  ...  :.  :  ::. :::.. :  . :.:     
CCDS95 -SGSVYAYGVMDRGYSYDLEVEQAYDLARRAIYQATYRDAYSGGAVNLYHVREDGWIRVS
       190       200       210       220       230       240       

            230         
pF1KB8 LLGDQIPKFAVATLPPA
                        
CCDS95 SDNVADLHEKYSGSTP 
       250       260    

>>CCDS6855.1 PSMB7 gene_id:5695|Hs108|chr9                (277 aa)
 initn: 336 init1: 259 opt: 342  Z-score: 455.0  bits: 91.8 E(32554): 5e-19
Smith-Waterman score: 342; 32.1% identity (65.2% similar) in 187 aa overlap (33-219:42-227)

             10        20        30        40        50        60  
pF1KB8 ATLLAARGAGPAPAWGPEAFTPDWESREVSTGTTIMAVQFDGGVVLGADSRTTTGSYIAN
                                     ::::: .: .  :.:::::.:.: :  .:.
CCDS68 GGFSFDNCRRNAVLEADFAKRGYKLPKVRKTGTTIAGVVYKDGIVLGADTRATEGMVVAD
              20        30        40        50        60        70 

             70        80        90       100       110       120  
pF1KB8 RVTDKLTPIHDRIFCCRSGSAADTQAVADAVTYQLGFHSIELNEPPLVHTAASLFKEMCY
       .  .:.  :   :.:: .:.::::. ... .. .: .::.  .. : : ::  ..:.: .
CCDS68 KNCSKIHFISPNIYCCGAGTAADTDMTTQLISSNLELHSLSTGRLPRVVTANRMLKQMLF
              80        90       100       110       120       130 

            130       140       150       160       170       180  
pF1KB8 RYREDLMAGIIIAGWDPQEGGQVYSVPMGGMMVRQSFAIGGSGSSYIYGYVDATYREGMT
       ::.  . :.....: :   : ..::.   :   .  ..  ::::   ..  .  .:  : 
CCDS68 RYQGYIGAALVLGGVDVT-GPHLYSIYPHGSTDKLPYVTMGSGSLAAMAVFEDKFRPDME
             140        150       160       170       180       190

            190       200       210       220       230            
pF1KB8 KEECLQFTANALALAMERDGSSGGVIRLAAIAESGVERQVLLGDQIPKFAVATLPPA   
       .::  .....:.: ..  : .::. : : .:... ..                       
CCDS68 EEEAKNLVSEAIAAGIFNDLGSGSNIDLCVISKNKLDFLRPYTVPNKKGTRLGRYRCEKG
              200       210       220       230       240       250

CCDS68 TTAVLTEKITPLEIEVLEETVQTMDTS
              260       270       

>>CCDS4756.1 PSMB8 gene_id:5696|Hs108|chr6                (272 aa)
 initn: 322 init1: 280 opt: 331  Z-score: 440.5  bits: 89.1 E(32554): 3.2e-18
Smith-Waterman score: 331; 32.8% identity (62.4% similar) in 189 aa overlap (30-217:64-251)

                10        20        30        40        50         
pF1KB8  MAATLLAARGAGPAPAWGPEAFTPDWESREVSTGTTIMAVQFDGGVVLGADSRTTTGSY
                                     :.. ::: .: .:. ::. ..:::...:::
CCDS47 PTPVSSGCPGLEPTEFFQSLGGDGERNVQIEMAHGTTTLAFKFQHGVIAAVDSRASAGSY
            40        50        60        70        80        90   

      60        70        80        90       100       110         
pF1KB8 IANRVTDKLTPIHDRIFCCRSGSAADTQAVADAVTYQLGFHSIELNEPPLVHTAASLFKE
       :.   ..:.  :.  ..   :: ::: :     .. .  .. .. .:   : .:..:...
CCDS47 ISALRVNKVIEINPYLLGTMSGCAADCQYWERLLAKECRLYYLRNGERISVSAASKLLSN
           100       110       120       130       140       150   

     120        130       140       150       160       170        
pF1KB8 MCYRYR-EDLMAGIIIAGWDPQEGGQVYSVPMGGMMVRQSFAIGGSGSSYIYGYVDATYR
       :  .::   :  : .: ::: ..:  .: :   :  .  ..   :::..: :: .:. ::
CCDS47 MMCQYRGMGLSMGSMICGWD-KKGPGLYYVDEHGTRLSGNMFSTGSGNTYAYGVMDSGYR
           160       170        180       190       200       210  

      180       190       200       210       220       230        
pF1KB8 EGMTKEECLQFTANALALAMERDGSSGGVIRLAAIAESGVERQVLLGDQIPKFAVATLPP
        ... ::  ..   :.: : .::. ::::. .  . :.:                     
CCDS47 PNLSPEEAYDLGRRAIAYATHRDSYSGGVVNMYHMKEDGWVKVESTDVSDLLHQYREANQ
            220       230       240       250       260       270  

        
pF1KB8 A

>>CCDS4757.1 PSMB8 gene_id:5696|Hs108|chr6                (276 aa)
 initn: 322 init1: 280 opt: 331  Z-score: 440.4  bits: 89.1 E(32554): 3.3e-18
Smith-Waterman score: 331; 32.8% identity (62.4% similar) in 189 aa overlap (30-217:68-255)

                10        20        30        40        50         
pF1KB8  MAATLLAARGAGPAPAWGPEAFTPDWESREVSTGTTIMAVQFDGGVVLGADSRTTTGSY
                                     :.. ::: .: .:. ::. ..:::...:::
CCDS47 RSPELALPRGMQPTEFFQSLGGDGERNVQIEMAHGTTTLAFKFQHGVIAAVDSRASAGSY
        40        50        60        70        80        90       

      60        70        80        90       100       110         
pF1KB8 IANRVTDKLTPIHDRIFCCRSGSAADTQAVADAVTYQLGFHSIELNEPPLVHTAASLFKE
       :.   ..:.  :.  ..   :: ::: :     .. .  .. .. .:   : .:..:...
CCDS47 ISALRVNKVIEINPYLLGTMSGCAADCQYWERLLAKECRLYYLRNGERISVSAASKLLSN
       100       110       120       130       140       150       

     120        130       140       150       160       170        
pF1KB8 MCYRYR-EDLMAGIIIAGWDPQEGGQVYSVPMGGMMVRQSFAIGGSGSSYIYGYVDATYR
       :  .::   :  : .: ::: ..:  .: :   :  .  ..   :::..: :: .:. ::
CCDS47 MMCQYRGMGLSMGSMICGWD-KKGPGLYYVDEHGTRLSGNMFSTGSGNTYAYGVMDSGYR
       160       170        180       190       200       210      

      180       190       200       210       220       230        
pF1KB8 EGMTKEECLQFTANALALAMERDGSSGGVIRLAAIAESGVERQVLLGDQIPKFAVATLPP
        ... ::  ..   :.: : .::. ::::. .  . :.:                     
CCDS47 PNLSPEEAYDLGRRAIAYATHRDSYSGGVVNMYHMKEDGWVKVESTDVSDLLHQYREANQ
        220       230       240       250       260       270      

        
pF1KB8 A

>>CCDS10853.1 PSMB10 gene_id:5699|Hs108|chr16             (273 aa)
 initn: 286 init1: 245 opt: 328  Z-score: 436.5  bits: 88.3 E(32554): 5.4e-18
Smith-Waterman score: 328; 29.9% identity (65.8% similar) in 187 aa overlap (33-219:38-223)

             10        20        30        40        50        60  
pF1KB8 ATLLAARGAGPAPAWGPEAFTPDWESREVSTGTTIMAVQFDGGVVLGADSRTTTGSYIAN
                                     ::::: .. :. ::.::::.:.:. : .:.
CCDS10 PRGGFSFENCQRNASLERVLPGLKVPHARKTGTTIAGLVFQDGVILGADTRATNDSVVAD
        10        20        30        40        50        60       

             70        80        90       100       110       120  
pF1KB8 RVTDKLTPIHDRIFCCRSGSAADTQAVADAVTYQLGFHSIELNEPPLVHTAASLFKEMCY
       .  .:.  :  .:.:: .: :::.. ..  :. .. .:..  .. : : :.. ....  .
CCDS10 KSCEKIHFIAPKIYCCGAGVAADAEMTTRMVASKMELHALSTGREPRVATVTRILRQTLF
        70        80        90       100       110       120       

            130       140       150       160       170       180  
pF1KB8 RYREDLMAGIIIAGWDPQEGGQVYSVPMGGMMVRQSFAIGGSGSSYIYGYVDATYREGMT
       ::.  . :..:..: :   : :.:.:   : . :  :.  :::..   . ..  .. .::
CCDS10 RYQGHVGASLIVGGVD-LTGPQLYGVHPHGSYSRLPFTALGSGQDAALAVLEDRFQPNMT
       130       140        150       160       170       180      

            190       200       210       220       230            
pF1KB8 KEECLQFTANALALAMERDGSSGGVIRLAAIAESGVERQVLLGDQIPKFAVATLPPA   
        :    . ..:.. ..  : .::: .   .:...:..                       
CCDS10 LEAAQGLLVEAVTAGILGDLGSGGNVDACVITKTGAKLLRTLSSPTEPVKRSGRYHFVPG
        190       200       210       220       230       240      

CCDS10 TTAVLTQTVKPLTLELVEETVQAMEVE
        250       260       270   




239 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 11:06:05 2016 done: Fri Nov  4 11:06:06 2016
 Total Scan time:  1.870 Total Display time:  0.000

Function used was FASTA [36.3.4 Apr, 2011]
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