Result of FASTA (ccds) for pF1KB8233
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB8233, 149 aa
  1>>>pF1KB8233 149 - 149 aa - 149 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 8.3678+/-0.000864; mu= 0.0693+/- 0.052
 mean_var=212.7594+/-42.965, 0's: 0 Z-trim(113.9): 13  B-trim: 13 in 1/51
 Lambda= 0.087929
 statistics sampled from 14517 (14529) to 14517 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.769), E-opt: 0.2 (0.446), width:  16
 Scan time:  1.830

The best scores are:                                      opt bits E(32554)
CCDS269.1 STMN1 gene_id:3925|Hs108|chr1            ( 149)  928 128.8 1.2e-30
CCDS44090.1 STMN1 gene_id:3925|Hs108|chr1          ( 174)  778 109.9 7.1e-25
CCDS64852.1 STMN4 gene_id:81551|Hs108|chr8         ( 189)  623 90.2 6.3e-19
CCDS6055.1 STMN4 gene_id:81551|Hs108|chr8          ( 216)  623 90.3 6.9e-19
CCDS43748.1 STMN2 gene_id:11075|Hs108|chr8         ( 179)  610 88.6 1.9e-18
CCDS63330.1 STMN3 gene_id:50861|Hs108|chr20        ( 169)  582 85.0 2.1e-17
CCDS13529.1 STMN3 gene_id:50861|Hs108|chr20        ( 180)  582 85.0 2.2e-17
CCDS56542.1 STMN2 gene_id:11075|Hs108|chr8         ( 187)  560 82.2 1.6e-16
CCDS64851.1 STMN4 gene_id:81551|Hs108|chr8         ( 167)  544 80.2   6e-16
CCDS64854.1 STMN4 gene_id:81551|Hs108|chr8         ( 203)  544 80.2 6.9e-16


>>CCDS269.1 STMN1 gene_id:3925|Hs108|chr1                 (149 aa)
 initn: 928 init1: 928 opt: 928  Z-score: 663.8  bits: 128.8 E(32554): 1.2e-30
Smith-Waterman score: 928; 100.0% identity (100.0% similar) in 149 aa overlap (1-149:1-149)

               10        20        30        40        50        60
pF1KB8 MASSDIQVKELEKRASGQAFELILSPRSKESVPEFPLSPPKKKDLSLEEIQKKLEAAEER
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS26 MASSDIQVKELEKRASGQAFELILSPRSKESVPEFPLSPPKKKDLSLEEIQKKLEAAEER
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB8 RKSHEAEVLKQLAEKREHEKEVLQKAIEENNNFSKMAEEKLTHKMEANKENREAQMAAKL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS26 RKSHEAEVLKQLAEKREHEKEVLQKAIEENNNFSKMAEEKLTHKMEANKENREAQMAAKL
               70        80        90       100       110       120

              130       140         
pF1KB8 ERLREKDKHIEEVRKNKESKDPADETEAD
       :::::::::::::::::::::::::::::
CCDS26 ERLREKDKHIEEVRKNKESKDPADETEAD
              130       140         

>>CCDS44090.1 STMN1 gene_id:3925|Hs108|chr1               (174 aa)
 initn: 778 init1: 778 opt: 778  Z-score: 560.0  bits: 109.9 E(32554): 7.1e-25
Smith-Waterman score: 778; 100.0% identity (100.0% similar) in 126 aa overlap (1-126:1-126)

               10        20        30        40        50        60
pF1KB8 MASSDIQVKELEKRASGQAFELILSPRSKESVPEFPLSPPKKKDLSLEEIQKKLEAAEER
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 MASSDIQVKELEKRASGQAFELILSPRSKESVPEFPLSPPKKKDLSLEEIQKKLEAAEER
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB8 RKSHEAEVLKQLAEKREHEKEVLQKAIEENNNFSKMAEEKLTHKMEANKENREAQMAAKL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 RKSHEAEVLKQLAEKREHEKEVLQKAIEENNNFSKMAEEKLTHKMEANKENREAQMAAKL
               70        80        90       100       110       120

              130       140                                  
pF1KB8 ERLREKDKHIEEVRKNKESKDPADETEAD                         
       ::::::                                                
CCDS44 ERLREKMYFWTHGPGAHPAQISAEQSCLHSVPALCPALGLQSALITWSDLSHHH
              130       140       150       160       170    

>>CCDS64852.1 STMN4 gene_id:81551|Hs108|chr8              (189 aa)
 initn: 711 init1: 623 opt: 623  Z-score: 453.3  bits: 90.2 E(32554): 6.3e-19
Smith-Waterman score: 623; 72.1% identity (90.0% similar) in 140 aa overlap (4-143:48-187)

                                          10        20        30   
pF1KB8                            MASSDIQVKELEKRASGQAFELILSPRSKESVP
                                     ::..: ::.: .:::.::.::.: : ..::
CCDS64 LFCSCFLADPLNKSSYKYEADTVDLNWCVISDMEVIELNKCTSGQSFEVILKPPSFDGVP
        20        30        40        50        60        70       

            40        50        60        70        80        90   
pF1KB8 EFPLSPPKKKDLSLEEIQKKLEAAEERRKSHEAEVLKQLAEKREHEKEVLQKAIEENNNF
       ::  : :...: ::::::::::::::::: .:::.::.::::::::.::.::::::::::
CCDS64 EFNASLPRRRDPSLEEIQKKLEAAEERRKYQEAELLKHLAEKREHEREVIQKAIEENNNF
        80        90       100       110       120       130       

           100       110       120       130       140         
pF1KB8 SKMAEEKLTHKMEANKENREAQMAAKLERLREKDKHIEEVRKNKESKDPADETEAD
        :::.:::..:::.:::::::..:: ::::.::::: :::::::: :. :      
CCDS64 IKMAKEKLAQKMESNKENREAHLAAMLERLQEKDKHAEEVRKNKELKEEASR    
       140       150       160       170       180             

>>CCDS6055.1 STMN4 gene_id:81551|Hs108|chr8               (216 aa)
 initn: 699 init1: 623 opt: 623  Z-score: 452.5  bits: 90.3 E(32554): 6.9e-19
Smith-Waterman score: 623; 72.1% identity (90.0% similar) in 140 aa overlap (4-143:75-214)

                                          10        20        30   
pF1KB8                            MASSDIQVKELEKRASGQAFELILSPRSKESVP
                                     ::..: ::.: .:::.::.::.: : ..::
CCDS60 RKDESQRKDSADWRERRAQADTVDLNWCVISDMEVIELNKCTSGQSFEVILKPPSFDGVP
           50        60        70        80        90       100    

            40        50        60        70        80        90   
pF1KB8 EFPLSPPKKKDLSLEEIQKKLEAAEERRKSHEAEVLKQLAEKREHEKEVLQKAIEENNNF
       ::  : :...: ::::::::::::::::: .:::.::.::::::::.::.::::::::::
CCDS60 EFNASLPRRRDPSLEEIQKKLEAAEERRKYQEAELLKHLAEKREHEREVIQKAIEENNNF
          110       120       130       140       150       160    

           100       110       120       130       140         
pF1KB8 SKMAEEKLTHKMEANKENREAQMAAKLERLREKDKHIEEVRKNKESKDPADETEAD
        :::.:::..:::.:::::::..:: ::::.::::: :::::::: :. :      
CCDS60 IKMAKEKLAQKMESNKENREAHLAAMLERLQEKDKHAEEVRKNKELKEEASR    
          170       180       190       200       210          

>>CCDS43748.1 STMN2 gene_id:11075|Hs108|chr8              (179 aa)
 initn: 610 init1: 610 opt: 610  Z-score: 444.7  bits: 88.6 E(32554): 1.9e-18
Smith-Waterman score: 610; 74.6% identity (88.1% similar) in 134 aa overlap (5-138:39-172)

                                         10        20        30    
pF1KB8                           MASSDIQVKELEKRASGQAFELILSPRSKESVPE
                                     :..::...::::::::::::.: :  :   
CCDS43 KEKMKELSMLSLICSCFYPEPRNINIYTYDDMEVKQINKRASGQAFELILKPPSPISEAP
       10        20        30        40        50        60        

           40        50        60        70        80        90    
pF1KB8 FPLSPPKKKDLSLEEIQKKLEAAEERRKSHEAEVLKQLAEKREHEKEVLQKAIEENNNFS
         :. ::::::::::::::::::::::::.::.::::::::::::.::::::.:::::::
CCDS43 RTLASPKKKDLSLEEIQKKLEAAEERRKSQEAQVLKQLAEKREHEREVLQKALEENNNFS
       70        80        90       100       110       120        

          100       110       120       130       140         
pF1KB8 KMAEEKLTHKMEANKENREAQMAAKLERLREKDKHIEEVRKNKESKDPADETEAD
       :::::::  :::  ::::::..:: .:::.::..:  :::.:::           
CCDS43 KMAEEKLILKMEQIKENREANLAAIIERLQEKERHAAEVRRNKELQVELSG    
      130       140       150       160       170             

>>CCDS63330.1 STMN3 gene_id:50861|Hs108|chr20             (169 aa)
 initn: 636 init1: 484 opt: 582  Z-score: 425.8  bits: 85.0 E(32554): 2.1e-17
Smith-Waterman score: 582; 67.6% identity (88.5% similar) in 139 aa overlap (5-141:28-165)

                                      10        20        30       
pF1KB8                        MASSDIQVKELEKRASGQAFELILSPRSKESVPEFPL
                                  :..::.:.::::::.::.::.  :  : :: :.
CCDS63 MKELSVLSLICSCFYTQPHPNTVYQYGDMEVKQLDKRASGQSFEVILKSPSDLS-PESPM
               10        20        30        40        50          

          40        50        60        70        80        90     
pF1KB8 --SPPKKKDLSLEEIQKKLEAAEERRKSHEAEVLKQLAEKREHEKEVLQKAIEENNNFSK
         ::::::: ::::.::.:::::::::..::.:::::::.::::.:::.::.:::::::.
CCDS63 LSSPPKKKDTSLEELQKRLEAAEERRKTQEAQVLKQLAERREHEREVLHKALEENNNFSR
      60        70        80        90       100       110         

         100       110       120       130       140         
pF1KB8 MAEEKLTHKMEANKENREAQMAAKLERLREKDKHIEEVRKNKESKDPADETEAD
       .:::::..::: .:: :::..::  ::::::. :  :::.:::...        
CCDS63 QAEEKLNYKMELSKEIREAHLAALRERLREKELHAAEVRRNKEQREEMSG    
     120       130       140       150       160             

>>CCDS13529.1 STMN3 gene_id:50861|Hs108|chr20             (180 aa)
 initn: 636 init1: 484 opt: 582  Z-score: 425.5  bits: 85.0 E(32554): 2.2e-17
Smith-Waterman score: 582; 67.6% identity (88.5% similar) in 139 aa overlap (5-141:39-176)

                                         10        20        30    
pF1KB8                           MASSDIQVKELEKRASGQAFELILSPRSKESVPE
                                     :..::.:.::::::.::.::.  :  : ::
CCDS13 KEKMKELSVLSLICSCFYTQPHPNTVYQYGDMEVKQLDKRASGQSFEVILKSPSDLS-PE
       10        20        30        40        50        60        

             40        50        60        70        80        90  
pF1KB8 FPL--SPPKKKDLSLEEIQKKLEAAEERRKSHEAEVLKQLAEKREHEKEVLQKAIEENNN
        :.  ::::::: ::::.::.:::::::::..::.:::::::.::::.:::.::.:::::
CCDS13 SPMLSSPPKKKDTSLEELQKRLEAAEERRKTQEAQVLKQLAERREHEREVLHKALEENNN
        70        80        90       100       110       120       

            100       110       120       130       140         
pF1KB8 FSKMAEEKLTHKMEANKENREAQMAAKLERLREKDKHIEEVRKNKESKDPADETEAD
       ::..:::::..::: .:: :::..::  ::::::. :  :::.:::...        
CCDS13 FSRQAEEKLNYKMELSKEIREAHLAALRERLREKELHAAEVRRNKEQREEMSG    
       130       140       150       160       170       180    

>>CCDS56542.1 STMN2 gene_id:11075|Hs108|chr8              (187 aa)
 initn: 557 init1: 557 opt: 560  Z-score: 410.2  bits: 82.2 E(32554): 1.6e-16
Smith-Waterman score: 560; 71.0% identity (85.5% similar) in 138 aa overlap (5-140:39-176)

                                         10        20        30    
pF1KB8                           MASSDIQVKELEKRASGQAFELILSPRSKESVPE
                                     :..::...::::::::::::.: :  :   
CCDS56 KEKMKELSMLSLICSCFYPEPRNINIYTYDDMEVKQINKRASGQAFELILKPPSPISEAP
       10        20        30        40        50        60        

           40        50        60        70        80        90    
pF1KB8 FPLSPPKKKDLSLEEIQKKLEAAEERRKSHEAEVLKQLAEKREHEKEVLQKAIEENNNFS
         :. ::::::::::::::::::::::::.::.::::::::::::.::::::.:::::::
CCDS56 RTLASPKKKDLSLEEIQKKLEAAEERRKSQEAQVLKQLAEKREHEREVLQKALEENNNFS
       70        80        90       100       110       120        

          100       110       120        130        140           
pF1KB8 KMAEEKLTHKMEANKENREAQMAAKLERLREKD-KHIE-EVRKNKESKDPADETEAD  
       :::::::  :::  ::::::..:: .:::.::  : :  :.... ::.           
CCDS56 KMAEEKLILKMEQIKENREANLAAIIERLQEKLVKFISSELKESIESQFLELQREGEKQ
      130       140       150       160       170       180       

>>CCDS64851.1 STMN4 gene_id:81551|Hs108|chr8              (167 aa)
 initn: 544 init1: 544 opt: 544  Z-score: 399.8  bits: 80.2 E(32554): 6e-16
Smith-Waterman score: 544; 71.0% identity (91.1% similar) in 124 aa overlap (4-127:39-162)

                                          10        20        30   
pF1KB8                            MASSDIQVKELEKRASGQAFELILSPRSKESVP
                                     ::..: ::.: .:::.::.::.: : ..::
CCDS64 LFCSCFLADPLNKSSYKYEADTVDLNWCVISDMEVIELNKCTSGQSFEVILKPPSFDGVP
       10        20        30        40        50        60        

            40        50        60        70        80        90   
pF1KB8 EFPLSPPKKKDLSLEEIQKKLEAAEERRKSHEAEVLKQLAEKREHEKEVLQKAIEENNNF
       ::  : :...: ::::::::::::::::: .:::.::.::::::::.::.::::::::::
CCDS64 EFNASLPRRRDPSLEEIQKKLEAAEERRKYQEAELLKHLAEKREHEREVIQKAIEENNNF
       70        80        90       100       110       120        

           100       110       120       130       140         
pF1KB8 SKMAEEKLTHKMEANKENREAQMAAKLERLREKDKHIEEVRKNKESKDPADETEAD
        :::.:::..:::.:::::::..:: ::::.::.                      
CCDS64 IKMAKEKLAQKMESNKENREAHLAAMLERLQEKEPPAAR                 
      130       140       150       160                        

>>CCDS64854.1 STMN4 gene_id:81551|Hs108|chr8              (203 aa)
 initn: 599 init1: 544 opt: 544  Z-score: 398.7  bits: 80.2 E(32554): 6.9e-16
Smith-Waterman score: 544; 71.0% identity (91.1% similar) in 124 aa overlap (4-127:75-198)

                                          10        20        30   
pF1KB8                            MASSDIQVKELEKRASGQAFELILSPRSKESVP
                                     ::..: ::.: .:::.::.::.: : ..::
CCDS64 RKDESQRKDSADWRERRAQADTVDLNWCVISDMEVIELNKCTSGQSFEVILKPPSFDGVP
           50        60        70        80        90       100    

            40        50        60        70        80        90   
pF1KB8 EFPLSPPKKKDLSLEEIQKKLEAAEERRKSHEAEVLKQLAEKREHEKEVLQKAIEENNNF
       ::  : :...: ::::::::::::::::: .:::.::.::::::::.::.::::::::::
CCDS64 EFNASLPRRRDPSLEEIQKKLEAAEERRKYQEAELLKHLAEKREHEREVIQKAIEENNNF
          110       120       130       140       150       160    

           100       110       120       130       140         
pF1KB8 SKMAEEKLTHKMEANKENREAQMAAKLERLREKDKHIEEVRKNKESKDPADETEAD
        :::.:::..:::.:::::::..:: ::::.::.                      
CCDS64 IKMAKEKLAQKMESNKENREAHLAAMLERLQEKEPPAAR                 
          170       180       190       200                    




149 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 10:49:02 2016 done: Fri Nov  4 10:49:02 2016
 Total Scan time:  1.830 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]
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