Result of FASTA (ccds) for pF1KB8227
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB8227, 185 aa
  1>>>pF1KB8227 185 - 185 aa - 185 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 8.3342+/-0.000732; mu= 1.4889+/- 0.044
 mean_var=192.3588+/-39.270, 0's: 0 Z-trim(116.8): 15  B-trim: 782 in 1/52
 Lambda= 0.092474
 statistics sampled from 17404 (17419) to 17404 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.834), E-opt: 0.2 (0.535), width:  16
 Scan time:  1.450

The best scores are:                                      opt bits E(32554)
CCDS14119.1 CD99 gene_id:4267|Hs108|chrY           ( 185) 1248 177.3 4.8e-45
CCDS14119.1 CD99 gene_id:4267|Hs108|chrX           ( 185) 1248 177.3 4.8e-45
CCDS83452.1 CD99 gene_id:4267|Hs108|chrX           ( 184) 1231 175.0 2.3e-44
CCDS83452.1 CD99 gene_id:4267|Hs108|chrY           ( 184) 1231 175.0 2.3e-44
CCDS75947.1 CD99 gene_id:4267|Hs108|chrX           ( 160) 1077 154.4 3.1e-38
CCDS75947.1 CD99 gene_id:4267|Hs108|chrY           ( 160) 1077 154.4 3.1e-38
CCDS48071.1 CD99 gene_id:4267|Hs108|chrX           ( 169)  937 135.8 1.4e-32
CCDS48071.1 CD99 gene_id:4267|Hs108|chrY           ( 169)  937 135.8 1.4e-32


>>CCDS14119.1 CD99 gene_id:4267|Hs108|chrY                (185 aa)
 initn: 1248 init1: 1248 opt: 1248  Z-score: 922.3  bits: 177.3 E(32554): 4.8e-45
Smith-Waterman score: 1248; 100.0% identity (100.0% similar) in 185 aa overlap (1-185:1-185)

               10        20        30        40        50        60
pF1KB8 MARGAALALLLFGLLGVLVAAPDGGFDLSDALPDNENKKPTAIPKKPSAGDDFDLGDAVV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 MARGAALALLLFGLLGVLVAAPDGGFDLSDALPDNENKKPTAIPKKPSAGDDFDLGDAVV
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB8 DGENDDPRPPNPPKPMPNPNPNHPSSSGSFSDADLADGVSGGEGKGGSDGGGSHRKEGEE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 DGENDDPRPPNPPKPMPNPNPNHPSSSGSFSDADLADGVSGGEGKGGSDGGGSHRKEGEE
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB8 ADAPGVIPGIVGAVVVAVAGAISSFIAYQKKKLCFKENAEQGEVDMESHRNANAEPAVQR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 ADAPGVIPGIVGAVVVAVAGAISSFIAYQKKKLCFKENAEQGEVDMESHRNANAEPAVQR
              130       140       150       160       170       180

            
pF1KB8 TLLEK
       :::::
CCDS14 TLLEK
            

>>CCDS14119.1 CD99 gene_id:4267|Hs108|chrX                (185 aa)
 initn: 1248 init1: 1248 opt: 1248  Z-score: 922.3  bits: 177.3 E(32554): 4.8e-45
Smith-Waterman score: 1248; 100.0% identity (100.0% similar) in 185 aa overlap (1-185:1-185)

               10        20        30        40        50        60
pF1KB8 MARGAALALLLFGLLGVLVAAPDGGFDLSDALPDNENKKPTAIPKKPSAGDDFDLGDAVV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 MARGAALALLLFGLLGVLVAAPDGGFDLSDALPDNENKKPTAIPKKPSAGDDFDLGDAVV
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB8 DGENDDPRPPNPPKPMPNPNPNHPSSSGSFSDADLADGVSGGEGKGGSDGGGSHRKEGEE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 DGENDDPRPPNPPKPMPNPNPNHPSSSGSFSDADLADGVSGGEGKGGSDGGGSHRKEGEE
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB8 ADAPGVIPGIVGAVVVAVAGAISSFIAYQKKKLCFKENAEQGEVDMESHRNANAEPAVQR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 ADAPGVIPGIVGAVVVAVAGAISSFIAYQKKKLCFKENAEQGEVDMESHRNANAEPAVQR
              130       140       150       160       170       180

            
pF1KB8 TLLEK
       :::::
CCDS14 TLLEK
            

>>CCDS83452.1 CD99 gene_id:4267|Hs108|chrX                (184 aa)
 initn: 1232 init1: 1078 opt: 1231  Z-score: 910.0  bits: 175.0 E(32554): 2.3e-44
Smith-Waterman score: 1231; 99.5% identity (99.5% similar) in 185 aa overlap (1-185:1-184)

               10        20        30        40        50        60
pF1KB8 MARGAALALLLFGLLGVLVAAPDGGFDLSDALPDNENKKPTAIPKKPSAGDDFDLGDAVV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS83 MARGAALALLLFGLLGVLVAAPDGGFDLSDALPDNENKKPTAIPKKPSAGDDFDLGDAVV
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB8 DGENDDPRPPNPPKPMPNPNPNHPSSSGSFSDADLADGVSGGEGKGGSDGGGSHRKEGEE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS83 DGENDDPRPPNPPKPMPNPNPNHPSSSGSFSDADLADGVSGGEGKGGSDGGGSHRKEGEE
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB8 ADAPGVIPGIVGAVVVAVAGAISSFIAYQKKKLCFKENAEQGEVDMESHRNANAEPAVQR
       :::::::::::::::::::::::::::::::::::::: :::::::::::::::::::::
CCDS83 ADAPGVIPGIVGAVVVAVAGAISSFIAYQKKKLCFKEN-EQGEVDMESHRNANAEPAVQR
              130       140       150        160       170         

            
pF1KB8 TLLEK
       :::::
CCDS83 TLLEK
     180    

>>CCDS83452.1 CD99 gene_id:4267|Hs108|chrY                (184 aa)
 initn: 1232 init1: 1078 opt: 1231  Z-score: 910.0  bits: 175.0 E(32554): 2.3e-44
Smith-Waterman score: 1231; 99.5% identity (99.5% similar) in 185 aa overlap (1-185:1-184)

               10        20        30        40        50        60
pF1KB8 MARGAALALLLFGLLGVLVAAPDGGFDLSDALPDNENKKPTAIPKKPSAGDDFDLGDAVV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS83 MARGAALALLLFGLLGVLVAAPDGGFDLSDALPDNENKKPTAIPKKPSAGDDFDLGDAVV
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB8 DGENDDPRPPNPPKPMPNPNPNHPSSSGSFSDADLADGVSGGEGKGGSDGGGSHRKEGEE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS83 DGENDDPRPPNPPKPMPNPNPNHPSSSGSFSDADLADGVSGGEGKGGSDGGGSHRKEGEE
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB8 ADAPGVIPGIVGAVVVAVAGAISSFIAYQKKKLCFKENAEQGEVDMESHRNANAEPAVQR
       :::::::::::::::::::::::::::::::::::::: :::::::::::::::::::::
CCDS83 ADAPGVIPGIVGAVVVAVAGAISSFIAYQKKKLCFKEN-EQGEVDMESHRNANAEPAVQR
              130       140       150        160       170         

            
pF1KB8 TLLEK
       :::::
CCDS83 TLLEK
     180    

>>CCDS75947.1 CD99 gene_id:4267|Hs108|chrX                (160 aa)
 initn: 1077 init1: 1077 opt: 1077  Z-score: 799.8  bits: 154.4 E(32554): 3.1e-38
Smith-Waterman score: 1077; 100.0% identity (100.0% similar) in 158 aa overlap (1-158:1-158)

               10        20        30        40        50        60
pF1KB8 MARGAALALLLFGLLGVLVAAPDGGFDLSDALPDNENKKPTAIPKKPSAGDDFDLGDAVV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS75 MARGAALALLLFGLLGVLVAAPDGGFDLSDALPDNENKKPTAIPKKPSAGDDFDLGDAVV
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB8 DGENDDPRPPNPPKPMPNPNPNHPSSSGSFSDADLADGVSGGEGKGGSDGGGSHRKEGEE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS75 DGENDDPRPPNPPKPMPNPNPNHPSSSGSFSDADLADGVSGGEGKGGSDGGGSHRKEGEE
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB8 ADAPGVIPGIVGAVVVAVAGAISSFIAYQKKKLCFKENAEQGEVDMESHRNANAEPAVQR
       ::::::::::::::::::::::::::::::::::::::                      
CCDS75 ADAPGVIPGIVGAVVVAVAGAISSFIAYQKKKLCFKENDG                    
              130       140       150       160                    

            
pF1KB8 TLLEK

>>CCDS75947.1 CD99 gene_id:4267|Hs108|chrY                (160 aa)
 initn: 1077 init1: 1077 opt: 1077  Z-score: 799.8  bits: 154.4 E(32554): 3.1e-38
Smith-Waterman score: 1077; 100.0% identity (100.0% similar) in 158 aa overlap (1-158:1-158)

               10        20        30        40        50        60
pF1KB8 MARGAALALLLFGLLGVLVAAPDGGFDLSDALPDNENKKPTAIPKKPSAGDDFDLGDAVV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS75 MARGAALALLLFGLLGVLVAAPDGGFDLSDALPDNENKKPTAIPKKPSAGDDFDLGDAVV
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB8 DGENDDPRPPNPPKPMPNPNPNHPSSSGSFSDADLADGVSGGEGKGGSDGGGSHRKEGEE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS75 DGENDDPRPPNPPKPMPNPNPNHPSSSGSFSDADLADGVSGGEGKGGSDGGGSHRKEGEE
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB8 ADAPGVIPGIVGAVVVAVAGAISSFIAYQKKKLCFKENAEQGEVDMESHRNANAEPAVQR
       ::::::::::::::::::::::::::::::::::::::                      
CCDS75 ADAPGVIPGIVGAVVVAVAGAISSFIAYQKKKLCFKENDG                    
              130       140       150       160                    

            
pF1KB8 TLLEK

>>CCDS48071.1 CD99 gene_id:4267|Hs108|chrX                (169 aa)
 initn: 932 init1: 932 opt: 937  Z-score: 698.6  bits: 135.8 E(32554): 1.4e-32
Smith-Waterman score: 1099; 91.4% identity (91.4% similar) in 185 aa overlap (1-185:1-169)

               10        20        30        40        50        60
pF1KB8 MARGAALALLLFGLLGVLVAAPDGGFDLSDALPDNENKKPTAIPKKPSAGDDFDLGDAVV
       :::::::::::::::::::::::::::::::::                :::::::::::
CCDS48 MARGAALALLLFGLLGVLVAAPDGGFDLSDALP----------------GDDFDLGDAVV
               10        20        30                        40    

               70        80        90       100       110       120
pF1KB8 DGENDDPRPPNPPKPMPNPNPNHPSSSGSFSDADLADGVSGGEGKGGSDGGGSHRKEGEE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS48 DGENDDPRPPNPPKPMPNPNPNHPSSSGSFSDADLADGVSGGEGKGGSDGGGSHRKEGEE
           50        60        70        80        90       100    

              130       140       150       160       170       180
pF1KB8 ADAPGVIPGIVGAVVVAVAGAISSFIAYQKKKLCFKENAEQGEVDMESHRNANAEPAVQR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS48 ADAPGVIPGIVGAVVVAVAGAISSFIAYQKKKLCFKENAEQGEVDMESHRNANAEPAVQR
          110       120       130       140       150       160    

            
pF1KB8 TLLEK
       :::::
CCDS48 TLLEK
            

>>CCDS48071.1 CD99 gene_id:4267|Hs108|chrY                (169 aa)
 initn: 932 init1: 932 opt: 937  Z-score: 698.6  bits: 135.8 E(32554): 1.4e-32
Smith-Waterman score: 1099; 91.4% identity (91.4% similar) in 185 aa overlap (1-185:1-169)

               10        20        30        40        50        60
pF1KB8 MARGAALALLLFGLLGVLVAAPDGGFDLSDALPDNENKKPTAIPKKPSAGDDFDLGDAVV
       :::::::::::::::::::::::::::::::::                :::::::::::
CCDS48 MARGAALALLLFGLLGVLVAAPDGGFDLSDALP----------------GDDFDLGDAVV
               10        20        30                        40    

               70        80        90       100       110       120
pF1KB8 DGENDDPRPPNPPKPMPNPNPNHPSSSGSFSDADLADGVSGGEGKGGSDGGGSHRKEGEE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS48 DGENDDPRPPNPPKPMPNPNPNHPSSSGSFSDADLADGVSGGEGKGGSDGGGSHRKEGEE
           50        60        70        80        90       100    

              130       140       150       160       170       180
pF1KB8 ADAPGVIPGIVGAVVVAVAGAISSFIAYQKKKLCFKENAEQGEVDMESHRNANAEPAVQR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS48 ADAPGVIPGIVGAVVVAVAGAISSFIAYQKKKLCFKENAEQGEVDMESHRNANAEPAVQR
          110       120       130       140       150       160    

            
pF1KB8 TLLEK
       :::::
CCDS48 TLLEK
            




185 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 10:44:59 2016 done: Fri Nov  4 10:45:00 2016
 Total Scan time:  1.450 Total Display time: -0.030

Function used was FASTA [36.3.4 Apr, 2011]
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