FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB8208, 125 aa
  1>>>pF1KB8208 125 - 125 aa - 125 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.1718+/-0.00072; mu= 10.9872+/- 0.043
 mean_var=50.2778+/-10.090, 0's: 0 Z-trim(106.4): 23  B-trim: 2 in 1/49
 Lambda= 0.180878
 statistics sampled from 8977 (8987) to 8977 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.666), E-opt: 0.2 (0.276), width:  16
 Scan time:  1.090

The best scores are:                                      opt bits E(32554)
CCDS2049.1 RPL31 gene_id:6160|Hs108|chr2           ( 125)  810 218.6 7.9e-58
CCDS46374.1 RPL31 gene_id:6160|Hs108|chr2          ( 121)  749 202.7 4.8e-53
CCDS46373.1 RPL31 gene_id:6160|Hs108|chr2          ( 128)  748 202.4   6e-53


>>CCDS2049.1 RPL31 gene_id:6160|Hs108|chr2                (125 aa)
 initn: 810 init1: 810 opt: 810  Z-score: 1151.7  bits: 218.6 E(32554): 7.9e-58
Smith-Waterman score: 810; 100.0% identity (100.0% similar) in 125 aa overlap (1-125:1-125)

               10        20        30        40        50        60
pF1KB8 MAPAKKGGEKKKGRSAINEVVTREYTINIHKRIHGVGFKKRAPRALKEIRKFAMKEMGTP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS20 MAPAKKGGEKKKGRSAINEVVTREYTINIHKRIHGVGFKKRAPRALKEIRKFAMKEMGTP
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB8 DVRIDTRLNKAVWAKGIRNVPYRIRVRLSRKRNEDEDSPNKLYTLVTYVPVTTFKNLQTV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS20 DVRIDTRLNKAVWAKGIRNVPYRIRVRLSRKRNEDEDSPNKLYTLVTYVPVTTFKNLQTV
               70        80        90       100       110       120

            
pF1KB8 NVDEN
       :::::
CCDS20 NVDEN
            

>>CCDS46374.1 RPL31 gene_id:6160|Hs108|chr2               (121 aa)
 initn: 761 init1: 749 opt: 749  Z-score: 1065.9  bits: 202.7 E(32554): 4.8e-53
Smith-Waterman score: 749; 99.1% identity (100.0% similar) in 116 aa overlap (1-116:1-116)

               10        20        30        40        50        60
pF1KB8 MAPAKKGGEKKKGRSAINEVVTREYTINIHKRIHGVGFKKRAPRALKEIRKFAMKEMGTP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS46 MAPAKKGGEKKKGRSAINEVVTREYTINIHKRIHGVGFKKRAPRALKEIRKFAMKEMGTP
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB8 DVRIDTRLNKAVWAKGIRNVPYRIRVRLSRKRNEDEDSPNKLYTLVTYVPVTTFKNLQTV
       :::::::::::::::::::::::::::::::::::::::::::::::::::::::.    
CCDS46 DVRIDTRLNKAVWAKGIRNVPYRIRVRLSRKRNEDEDSPNKLYTLVTYVPVTTFKSKFSI
               70        80        90       100       110       120

            
pF1KB8 NVDEN
            
CCDS46 P    
            

>>CCDS46373.1 RPL31 gene_id:6160|Hs108|chr2               (128 aa)
 initn: 748 init1: 748 opt: 748  Z-score: 1064.1  bits: 202.4 E(32554): 6e-53
Smith-Waterman score: 748; 100.0% identity (100.0% similar) in 115 aa overlap (1-115:1-115)

               10        20        30        40        50        60
pF1KB8 MAPAKKGGEKKKGRSAINEVVTREYTINIHKRIHGVGFKKRAPRALKEIRKFAMKEMGTP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS46 MAPAKKGGEKKKGRSAINEVVTREYTINIHKRIHGVGFKKRAPRALKEIRKFAMKEMGTP
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB8 DVRIDTRLNKAVWAKGIRNVPYRIRVRLSRKRNEDEDSPNKLYTLVTYVPVTTFKNLQTV
       :::::::::::::::::::::::::::::::::::::::::::::::::::::::     
CCDS46 DVRIDTRLNKAVWAKGIRNVPYRIRVRLSRKRNEDEDSPNKLYTLVTYVPVTTFKISVLN
               70        80        90       100       110       120

               
pF1KB8 NVDEN   
               
CCDS46 SVTVAKSP
               




125 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 10:34:56 2016 done: Fri Nov  4 10:34:56 2016
 Total Scan time:  1.090 Total Display time: -0.030

Function used was FASTA [36.3.4 Apr, 2011]