Result of FASTA (omim) for pF1KB8128
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB8128, 308 aa
  1>>>pF1KB8128 308 - 308 aa - 308 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.2029+/-0.000392; mu= 15.5861+/- 0.024
 mean_var=61.3166+/-12.650, 0's: 0 Z-trim(111.8): 17  B-trim: 22 in 1/49
 Lambda= 0.163789
 statistics sampled from 20501 (20510) to 20501 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.616), E-opt: 0.2 (0.24), width:  16
 Scan time:  6.080

The best scores are:                                      opt bits E(85289)
NP_057714 (OMIM: 248900,608181) maspardin isoform  ( 308) 2090 502.6 4.2e-142
XP_005254494 (OMIM: 248900,608181) PREDICTED: masp ( 308) 2090 502.6 4.2e-142
XP_016877786 (OMIM: 248900,608181) PREDICTED: masp ( 308) 2090 502.6 4.2e-142
XP_016877787 (OMIM: 248900,608181) PREDICTED: masp ( 308) 2090 502.6 4.2e-142
NP_001121361 (OMIM: 248900,608181) maspardin isofo ( 308) 2090 502.6 4.2e-142
NP_001121362 (OMIM: 248900,608181) maspardin isofo ( 281) 1362 330.5 2.4e-90


>>NP_057714 (OMIM: 248900,608181) maspardin isoform a [H  (308 aa)
 initn: 2090 init1: 2090 opt: 2090  Z-score: 2672.2  bits: 502.6 E(85289): 4.2e-142
Smith-Waterman score: 2090; 100.0% identity (100.0% similar) in 308 aa overlap (1-308:1-308)

               10        20        30        40        50        60
pF1KB8 MGEIKVSPDYNWFRGTVPLKKIIVDDDDSKIWSLYDAGPRSIRCPLIFLPPVSGTADVFF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_057 MGEIKVSPDYNWFRGTVPLKKIIVDDDDSKIWSLYDAGPRSIRCPLIFLPPVSGTADVFF
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB8 RQILALTGWGYRVIALQYPVYWDHLEFCDGFRKLLDHLQLDKVHLFGASLGGFLAQKFAE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_057 RQILALTGWGYRVIALQYPVYWDHLEFCDGFRKLLDHLQLDKVHLFGASLGGFLAQKFAE
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB8 YTHKSPRVHSLILCNSFSDTSIFNQTWTANSFWLMPAFMLKKIVLGNFSSGPVDPMMADA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_057 YTHKSPRVHSLILCNSFSDTSIFNQTWTANSFWLMPAFMLKKIVLGNFSSGPVDPMMADA
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB8 IDFMVDRLESLGQSELASRLTLNCQNSYVEPHKIRDIPVTIMDVFDQSALSTEAKEEMYK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_057 IDFMVDRLESLGQSELASRLTLNCQNSYVEPHKIRDIPVTIMDVFDQSALSTEAKEEMYK
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB8 LYPNARRAHLKTGGNFPYLCRSAEVNLYVQIHLLQFHGTKYAAIDPSMVSAEELEVQKGS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_057 LYPNARRAHLKTGGNFPYLCRSAEVNLYVQIHLLQFHGTKYAAIDPSMVSAEELEVQKGS
              250       260       270       280       290       300

               
pF1KB8 LGISQEEQ
       ::::::::
NP_057 LGISQEEQ
               

>>XP_005254494 (OMIM: 248900,608181) PREDICTED: maspardi  (308 aa)
 initn: 2090 init1: 2090 opt: 2090  Z-score: 2672.2  bits: 502.6 E(85289): 4.2e-142
Smith-Waterman score: 2090; 100.0% identity (100.0% similar) in 308 aa overlap (1-308:1-308)

               10        20        30        40        50        60
pF1KB8 MGEIKVSPDYNWFRGTVPLKKIIVDDDDSKIWSLYDAGPRSIRCPLIFLPPVSGTADVFF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 MGEIKVSPDYNWFRGTVPLKKIIVDDDDSKIWSLYDAGPRSIRCPLIFLPPVSGTADVFF
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB8 RQILALTGWGYRVIALQYPVYWDHLEFCDGFRKLLDHLQLDKVHLFGASLGGFLAQKFAE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 RQILALTGWGYRVIALQYPVYWDHLEFCDGFRKLLDHLQLDKVHLFGASLGGFLAQKFAE
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB8 YTHKSPRVHSLILCNSFSDTSIFNQTWTANSFWLMPAFMLKKIVLGNFSSGPVDPMMADA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 YTHKSPRVHSLILCNSFSDTSIFNQTWTANSFWLMPAFMLKKIVLGNFSSGPVDPMMADA
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB8 IDFMVDRLESLGQSELASRLTLNCQNSYVEPHKIRDIPVTIMDVFDQSALSTEAKEEMYK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 IDFMVDRLESLGQSELASRLTLNCQNSYVEPHKIRDIPVTIMDVFDQSALSTEAKEEMYK
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB8 LYPNARRAHLKTGGNFPYLCRSAEVNLYVQIHLLQFHGTKYAAIDPSMVSAEELEVQKGS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 LYPNARRAHLKTGGNFPYLCRSAEVNLYVQIHLLQFHGTKYAAIDPSMVSAEELEVQKGS
              250       260       270       280       290       300

               
pF1KB8 LGISQEEQ
       ::::::::
XP_005 LGISQEEQ
               

>>XP_016877786 (OMIM: 248900,608181) PREDICTED: maspardi  (308 aa)
 initn: 2090 init1: 2090 opt: 2090  Z-score: 2672.2  bits: 502.6 E(85289): 4.2e-142
Smith-Waterman score: 2090; 100.0% identity (100.0% similar) in 308 aa overlap (1-308:1-308)

               10        20        30        40        50        60
pF1KB8 MGEIKVSPDYNWFRGTVPLKKIIVDDDDSKIWSLYDAGPRSIRCPLIFLPPVSGTADVFF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 MGEIKVSPDYNWFRGTVPLKKIIVDDDDSKIWSLYDAGPRSIRCPLIFLPPVSGTADVFF
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB8 RQILALTGWGYRVIALQYPVYWDHLEFCDGFRKLLDHLQLDKVHLFGASLGGFLAQKFAE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 RQILALTGWGYRVIALQYPVYWDHLEFCDGFRKLLDHLQLDKVHLFGASLGGFLAQKFAE
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB8 YTHKSPRVHSLILCNSFSDTSIFNQTWTANSFWLMPAFMLKKIVLGNFSSGPVDPMMADA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 YTHKSPRVHSLILCNSFSDTSIFNQTWTANSFWLMPAFMLKKIVLGNFSSGPVDPMMADA
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB8 IDFMVDRLESLGQSELASRLTLNCQNSYVEPHKIRDIPVTIMDVFDQSALSTEAKEEMYK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 IDFMVDRLESLGQSELASRLTLNCQNSYVEPHKIRDIPVTIMDVFDQSALSTEAKEEMYK
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB8 LYPNARRAHLKTGGNFPYLCRSAEVNLYVQIHLLQFHGTKYAAIDPSMVSAEELEVQKGS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 LYPNARRAHLKTGGNFPYLCRSAEVNLYVQIHLLQFHGTKYAAIDPSMVSAEELEVQKGS
              250       260       270       280       290       300

               
pF1KB8 LGISQEEQ
       ::::::::
XP_016 LGISQEEQ
               

>>XP_016877787 (OMIM: 248900,608181) PREDICTED: maspardi  (308 aa)
 initn: 2090 init1: 2090 opt: 2090  Z-score: 2672.2  bits: 502.6 E(85289): 4.2e-142
Smith-Waterman score: 2090; 100.0% identity (100.0% similar) in 308 aa overlap (1-308:1-308)

               10        20        30        40        50        60
pF1KB8 MGEIKVSPDYNWFRGTVPLKKIIVDDDDSKIWSLYDAGPRSIRCPLIFLPPVSGTADVFF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 MGEIKVSPDYNWFRGTVPLKKIIVDDDDSKIWSLYDAGPRSIRCPLIFLPPVSGTADVFF
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB8 RQILALTGWGYRVIALQYPVYWDHLEFCDGFRKLLDHLQLDKVHLFGASLGGFLAQKFAE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 RQILALTGWGYRVIALQYPVYWDHLEFCDGFRKLLDHLQLDKVHLFGASLGGFLAQKFAE
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB8 YTHKSPRVHSLILCNSFSDTSIFNQTWTANSFWLMPAFMLKKIVLGNFSSGPVDPMMADA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 YTHKSPRVHSLILCNSFSDTSIFNQTWTANSFWLMPAFMLKKIVLGNFSSGPVDPMMADA
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB8 IDFMVDRLESLGQSELASRLTLNCQNSYVEPHKIRDIPVTIMDVFDQSALSTEAKEEMYK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 IDFMVDRLESLGQSELASRLTLNCQNSYVEPHKIRDIPVTIMDVFDQSALSTEAKEEMYK
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB8 LYPNARRAHLKTGGNFPYLCRSAEVNLYVQIHLLQFHGTKYAAIDPSMVSAEELEVQKGS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 LYPNARRAHLKTGGNFPYLCRSAEVNLYVQIHLLQFHGTKYAAIDPSMVSAEELEVQKGS
              250       260       270       280       290       300

               
pF1KB8 LGISQEEQ
       ::::::::
XP_016 LGISQEEQ
               

>>NP_001121361 (OMIM: 248900,608181) maspardin isoform a  (308 aa)
 initn: 2090 init1: 2090 opt: 2090  Z-score: 2672.2  bits: 502.6 E(85289): 4.2e-142
Smith-Waterman score: 2090; 100.0% identity (100.0% similar) in 308 aa overlap (1-308:1-308)

               10        20        30        40        50        60
pF1KB8 MGEIKVSPDYNWFRGTVPLKKIIVDDDDSKIWSLYDAGPRSIRCPLIFLPPVSGTADVFF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MGEIKVSPDYNWFRGTVPLKKIIVDDDDSKIWSLYDAGPRSIRCPLIFLPPVSGTADVFF
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB8 RQILALTGWGYRVIALQYPVYWDHLEFCDGFRKLLDHLQLDKVHLFGASLGGFLAQKFAE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 RQILALTGWGYRVIALQYPVYWDHLEFCDGFRKLLDHLQLDKVHLFGASLGGFLAQKFAE
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB8 YTHKSPRVHSLILCNSFSDTSIFNQTWTANSFWLMPAFMLKKIVLGNFSSGPVDPMMADA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 YTHKSPRVHSLILCNSFSDTSIFNQTWTANSFWLMPAFMLKKIVLGNFSSGPVDPMMADA
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB8 IDFMVDRLESLGQSELASRLTLNCQNSYVEPHKIRDIPVTIMDVFDQSALSTEAKEEMYK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 IDFMVDRLESLGQSELASRLTLNCQNSYVEPHKIRDIPVTIMDVFDQSALSTEAKEEMYK
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB8 LYPNARRAHLKTGGNFPYLCRSAEVNLYVQIHLLQFHGTKYAAIDPSMVSAEELEVQKGS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 LYPNARRAHLKTGGNFPYLCRSAEVNLYVQIHLLQFHGTKYAAIDPSMVSAEELEVQKGS
              250       260       270       280       290       300

               
pF1KB8 LGISQEEQ
       ::::::::
NP_001 LGISQEEQ
               

>>NP_001121362 (OMIM: 248900,608181) maspardin isoform b  (281 aa)
 initn: 1362 init1: 1362 opt: 1362  Z-score: 1743.1  bits: 330.5 E(85289): 2.4e-90
Smith-Waterman score: 1822; 91.2% identity (91.2% similar) in 308 aa overlap (1-308:1-281)

               10        20        30        40        50        60
pF1KB8 MGEIKVSPDYNWFRGTVPLKKIIVDDDDSKIWSLYDAGPRSIRCPLIFLPPVSGTADVFF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MGEIKVSPDYNWFRGTVPLKKIIVDDDDSKIWSLYDAGPRSIRCPLIFLPPVSGTADVFF
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB8 RQILALTGWGYRVIALQYPVYWDHLEFCDGFRKLLDHLQLDKVHLFGASLGGFLAQKFAE
       :::::::::::::::                           ::::::::::::::::::
NP_001 RQILALTGWGYRVIA---------------------------VHLFGASLGGFLAQKFAE
               70                                   80        90   

              130       140       150       160       170       180
pF1KB8 YTHKSPRVHSLILCNSFSDTSIFNQTWTANSFWLMPAFMLKKIVLGNFSSGPVDPMMADA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 YTHKSPRVHSLILCNSFSDTSIFNQTWTANSFWLMPAFMLKKIVLGNFSSGPVDPMMADA
           100       110       120       130       140       150   

              190       200       210       220       230       240
pF1KB8 IDFMVDRLESLGQSELASRLTLNCQNSYVEPHKIRDIPVTIMDVFDQSALSTEAKEEMYK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 IDFMVDRLESLGQSELASRLTLNCQNSYVEPHKIRDIPVTIMDVFDQSALSTEAKEEMYK
           160       170       180       190       200       210   

              250       260       270       280       290       300
pF1KB8 LYPNARRAHLKTGGNFPYLCRSAEVNLYVQIHLLQFHGTKYAAIDPSMVSAEELEVQKGS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 LYPNARRAHLKTGGNFPYLCRSAEVNLYVQIHLLQFHGTKYAAIDPSMVSAEELEVQKGS
           220       230       240       250       260       270   

               
pF1KB8 LGISQEEQ
       ::::::::
NP_001 LGISQEEQ
           280 




308 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 09:48:09 2016 done: Fri Nov  4 09:48:10 2016
 Total Scan time:  6.080 Total Display time:  0.000

Function used was FASTA [36.3.4 Apr, 2011]
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