Result of FASTA (ccds) for pF1KB8112
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB8112, 152 aa
  1>>>pF1KB8112 152 - 152 aa - 152 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.2686+/-0.000646; mu= 11.9151+/- 0.039
 mean_var=62.7498+/-12.617, 0's: 0 Z-trim(110.3): 64  B-trim: 0 in 0/50
 Lambda= 0.161908
 statistics sampled from 11430 (11501) to 11430 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.746), E-opt: 0.2 (0.353), width:  16
 Scan time:  1.820

The best scores are:                                      opt bits E(32554)
CCDS31875.1 UBE2N gene_id:7334|Hs108|chr12         ( 152) 1019 245.9 7.2e-66
CCDS1425.1 UBE2T gene_id:29089|Hs108|chr1          ( 197)  464 116.3 9.5e-27
CCDS43369.1 UBE2D2 gene_id:7322|Hs108|chr5         ( 147)  460 115.3 1.4e-26
CCDS3661.1 UBE2D3 gene_id:7323|Hs108|chr4          ( 148)  459 115.1 1.7e-26
CCDS5474.1 UBE2D4 gene_id:51619|Hs108|chr7         ( 147)  458 114.8   2e-26
CCDS3660.1 UBE2D3 gene_id:7323|Hs108|chr4          ( 147)  456 114.4 2.7e-26
CCDS7252.1 UBE2D1 gene_id:7321|Hs108|chr10         ( 147)  453 113.7 4.4e-26
CCDS3659.1 UBE2D3 gene_id:7323|Hs108|chr4          ( 149)  444 111.6 1.9e-25
CCDS33976.1 UBE2K gene_id:3093|Hs108|chr4          ( 200)  444 111.6 2.5e-25
CCDS47275.1 UBE2D2 gene_id:7322|Hs108|chr5         ( 118)  432 108.7 1.1e-24
CCDS75172.1 UBE2D3 gene_id:7323|Hs108|chr4         ( 118)  427 107.6 2.5e-24
CCDS2638.1 UBE2E1 gene_id:7324|Hs108|chr3          ( 193)  429 108.1 2.7e-24
CCDS56244.1 UBE2E1 gene_id:7324|Hs108|chr3         ( 160)  426 107.4 3.7e-24
CCDS2637.1 UBE2E2 gene_id:7325|Hs108|chr3          ( 201)  427 107.7 3.9e-24
CCDS14580.1 UBE2A gene_id:7319|Hs108|chrX          ( 152)  425 107.1 4.2e-24
CCDS2282.1 UBE2E3 gene_id:10477|Hs108|chr2         ( 207)  426 107.4 4.7e-24
CCDS4174.1 UBE2B gene_id:7320|Hs108|chr5           ( 152)  423 106.7 5.8e-24
CCDS73139.1 UBE2D1 gene_id:7321|Hs108|chr10        ( 109)  400 101.2 1.8e-22
CCDS47043.1 UBE2K gene_id:3093|Hs108|chr4          ( 157)  397 100.6   4e-22
CCDS2639.1 UBE2E1 gene_id:7324|Hs108|chr3          ( 176)  393 99.7 8.5e-22
CCDS33114.1 UBE2S gene_id:27338|Hs108|chr19        ( 222)  372 94.8 3.1e-20
CCDS13370.1 UBE2C gene_id:11065|Hs108|chr20        ( 179)  366 93.4 6.8e-20
CCDS78500.1 UBE2A gene_id:7319|Hs108|chrX          ( 119)  354 90.5 3.4e-19
CCDS13374.1 UBE2C gene_id:11065|Hs108|chr20        ( 140)  352 90.1 5.3e-19
CCDS13790.1 UBE2L3 gene_id:7332|Hs108|chr22        ( 154)  333 85.6 1.3e-17
CCDS13372.1 UBE2C gene_id:11065|Hs108|chr20        ( 150)  326 84.0 3.8e-17
CCDS58795.1 UBE2L3 gene_id:7332|Hs108|chr22        ( 212)  320 82.7 1.4e-16
CCDS47044.1 UBE2K gene_id:3093|Hs108|chr4          ( 149)  307 79.6 8.2e-16
CCDS58796.1 UBE2L3 gene_id:7332|Hs108|chr22        ( 122)  303 78.6 1.3e-15
CCDS7960.1 UBE2L6 gene_id:9246|Hs108|chr11         ( 153)  297 77.2 4.2e-15
CCDS10433.1 UBE2I gene_id:7329|Hs108|chr16         ( 158)  295 76.8   6e-15
CCDS5814.1 UBE2H gene_id:7328|Hs108|chr7           ( 183)  295 76.8 6.8e-15
CCDS12987.1 UBE2M gene_id:9040|Hs108|chr19         ( 183)  273 71.7 2.4e-13
CCDS32532.1 UBE2G1 gene_id:7326|Hs108|chr17        ( 170)  253 67.0 5.8e-12
CCDS2523.1 UBE2F gene_id:140739|Hs108|chr2         ( 185)  249 66.1 1.2e-11
CCDS63175.1 UBE2F gene_id:140739|Hs108|chr2        ( 161)  243 64.6 2.8e-11
CCDS13714.1 UBE2G2 gene_id:7327|Hs108|chr21        ( 165)  238 63.5 6.4e-11


>>CCDS31875.1 UBE2N gene_id:7334|Hs108|chr12              (152 aa)
 initn: 1019 init1: 1019 opt: 1019  Z-score: 1296.0  bits: 245.9 E(32554): 7.2e-66
Smith-Waterman score: 1019; 100.0% identity (100.0% similar) in 152 aa overlap (1-152:1-152)

               10        20        30        40        50        60
pF1KB8 MAGLPRRIIKETQRLLAEPVPGIKAEPDESNARYFHVVIAGPQDSPFEGGTFKLELFLPE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 MAGLPRRIIKETQRLLAEPVPGIKAEPDESNARYFHVVIAGPQDSPFEGGTFKLELFLPE
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB8 EYPMAAPKVRFMTKIYHPNVDKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 EYPMAAPKVRFMTKIYHPNVDKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDP
               70        80        90       100       110       120

              130       140       150  
pF1KB8 LANDVAEQWKTNEAQAIETARAWTRLYAMNNI
       ::::::::::::::::::::::::::::::::
CCDS31 LANDVAEQWKTNEAQAIETARAWTRLYAMNNI
              130       140       150  

>>CCDS1425.1 UBE2T gene_id:29089|Hs108|chr1               (197 aa)
 initn: 437 init1: 294 opt: 464  Z-score: 593.7  bits: 116.3 E(32554): 9.5e-27
Smith-Waterman score: 464; 45.9% identity (71.9% similar) in 146 aa overlap (7-148:6-151)

               10        20        30        40        50        60
pF1KB8 MAGLPRRIIKETQRLLAEPVPGIKAEPDESNARYFHVVIAGPQDSPFEGGTFKLELFLPE
             :. .: . : .:: :::    :...   ... : :  ..:.: :.::::...::
CCDS14  MQRASRLKRELHMLATEPPPGITCWQDKDQMDDLRAQILGGANTPYEKGVFKLEVIIPE
                10        20        30        40        50         

               70        80        90           100       110      
pF1KB8 EYPMAAPKVRFMTKIYHPNVDKLGRICLDILK----DKWSPALQIRTVLLSIQALLSAPN
       .::.  :..::.: :::::.:. ::::::.::      : :.:.: ::: ::: :.: ::
CCDS14 RYPFEPPQIRFLTPIYHPNIDSAGRICLDVLKLPPKGAWRPSLNIATVLTSIQLLMSEPN
      60        70        80        90       100       110         

        120       130       140       150                          
pF1KB8 PDDPLANDVAEQWKTNEAQAIETARAWTRLYAMNNI                        
       :::::  :.. ..: :.   ...:: ::. .:                            
CCDS14 PDDPLMADISSEFKYNKPAFLKNARQWTEKHARQKQKADEEEMLDNLPEAGDSRVHNSTQ
     120       130       140       150       160       170         

CCDS14 KRKASQLVGIEKKFHPDV
     180       190       

>>CCDS43369.1 UBE2D2 gene_id:7322|Hs108|chr5              (147 aa)
 initn: 460 init1: 460 opt: 460  Z-score: 590.6  bits: 115.3 E(32554): 1.4e-26
Smith-Waterman score: 460; 47.2% identity (72.9% similar) in 144 aa overlap (6-149:4-147)

               10        20        30        40        50        60
pF1KB8 MAGLPRRIIKETQRLLAEPVPGIKAEPDESNARYFHVVIAGPQDSPFEGGTFKLELFLPE
            .:: :: . :  .:    .: :  ..  .....: ::.:::..::.: : . .: 
CCDS43   MALKRIHKELNDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPT
                 10        20        30        40        50        

               70        80        90       100       110       120
pF1KB8 EYPMAAPKVRFMTKIYHPNVDKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDP
       .::.  ::: : :.:::::... : ::::::...::::: :  ::::: .::  ::::::
CCDS43 DYPFKPPKVAFTTRIYHPNINSNGSICLDILRSQWSPALTISKVLLSICSLLCDPNPDDP
       60        70        80        90       100       110        

              130       140       150  
pF1KB8 LANDVAEQWKTNEAQAIETARAWTRLYAMNNI
       :. ..:. .::.. .  . :: ::. :::   
CCDS43 LVPEIARIYKTDREKYNRIAREWTQKYAM   
      120       130       140          

>>CCDS3661.1 UBE2D3 gene_id:7323|Hs108|chr4               (148 aa)
 initn: 459 init1: 459 opt: 459  Z-score: 589.3  bits: 115.1 E(32554): 1.7e-26
Smith-Waterman score: 459; 47.2% identity (72.9% similar) in 144 aa overlap (6-149:4-147)

               10        20        30        40        50        60
pF1KB8 MAGLPRRIIKETQRLLAEPVPGIKAEPDESNARYFHVVIAGPQDSPFEGGTFKLELFLPE
            .:: :: . :  .:    .: :  ..  .....: ::.:::..::.: : . .: 
CCDS36   MALKRINKELSDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPT
                 10        20        30        40        50        

               70        80        90       100       110       120
pF1KB8 EYPMAAPKVRFMTKIYHPNVDKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDP
       .::.  ::: : :.:::::... : ::::::...::::: :  ::::: .::  ::::::
CCDS36 DYPFKPPKVAFTTRIYHPNINSNGSICLDILRSQWSPALTISKVLLSICSLLCDPNPDDP
       60        70        80        90       100       110        

              130       140       150  
pF1KB8 LANDVAEQWKTNEAQAIETARAWTRLYAMNNI
       :. ..:. .::.. .  . :: ::. :::   
CCDS36 LVPEIARIYKTDRDKYNRLAREWTEKYAML  
      120       130       140          

>>CCDS5474.1 UBE2D4 gene_id:51619|Hs108|chr7              (147 aa)
 initn: 458 init1: 458 opt: 458  Z-score: 588.1  bits: 114.8 E(32554): 2e-26
Smith-Waterman score: 458; 46.5% identity (72.2% similar) in 144 aa overlap (6-149:4-147)

               10        20        30        40        50        60
pF1KB8 MAGLPRRIIKETQRLLAEPVPGIKAEPDESNARYFHVVIAGPQDSPFEGGTFKLELFLPE
            .:: ::   :  .:    .: :  ..  .....: ::.:::..::.: : . .: 
CCDS54   MALKRIQKELTDLQRDPPAQCSAGPVGDDLFHWQATIMGPNDSPYQGGVFFLTIHFPT
                 10        20        30        40        50        

               70        80        90       100       110       120
pF1KB8 EYPMAAPKVRFMTKIYHPNVDKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDP
       .::.  ::: : :::::::... : ::::::...::::: .  ::::: .::  ::::::
CCDS54 DYPFKPPKVAFTTKIYHPNINSNGSICLDILRSQWSPALTVSKVLLSICSLLCDPNPDDP
       60        70        80        90       100       110        

              130       140       150  
pF1KB8 LANDVAEQWKTNEAQAIETARAWTRLYAMNNI
       :. ..:. .:... .  . :: ::. :::   
CCDS54 LVPEIAHTYKADREKYNRLAREWTQKYAM   
      120       130       140          

>>CCDS3660.1 UBE2D3 gene_id:7323|Hs108|chr4               (147 aa)
 initn: 456 init1: 456 opt: 456  Z-score: 585.5  bits: 114.4 E(32554): 2.7e-26
Smith-Waterman score: 456; 46.5% identity (72.9% similar) in 144 aa overlap (6-149:4-147)

               10        20        30        40        50        60
pF1KB8 MAGLPRRIIKETQRLLAEPVPGIKAEPDESNARYFHVVIAGPQDSPFEGGTFKLELFLPE
            .:: :: . :  .:    .: :  ..  .....: ::.:::..::.: : . .: 
CCDS36   MALKRINKELSDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPT
                 10        20        30        40        50        

               70        80        90       100       110       120
pF1KB8 EYPMAAPKVRFMTKIYHPNVDKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDP
       .::.  ::: : :.:::::... : ::::::...::::: :  ::::: .::  ::::::
CCDS36 DYPFKPPKVAFTTRIYHPNINSNGSICLDILRSQWSPALTISKVLLSICSLLCDPNPDDP
       60        70        80        90       100       110        

              130       140       150  
pF1KB8 LANDVAEQWKTNEAQAIETARAWTRLYAMNNI
       :. ..:. .::.. .  . .: ::. :::   
CCDS36 LVPEIARIYKTDRDKYNRISREWTQKYAM   
      120       130       140          

>>CCDS7252.1 UBE2D1 gene_id:7321|Hs108|chr10              (147 aa)
 initn: 453 init1: 453 opt: 453  Z-score: 581.7  bits: 113.7 E(32554): 4.4e-26
Smith-Waterman score: 453; 45.8% identity (71.5% similar) in 144 aa overlap (6-149:4-147)

               10        20        30        40        50        60
pF1KB8 MAGLPRRIIKETQRLLAEPVPGIKAEPDESNARYFHVVIAGPQDSPFEGGTFKLELFLPE
            .:: :: . :  .:    .: :  ..  .....: :: :: ..::.: : . .: 
CCDS72   MALKRIQKELSDLQRDPPAHCSAGPVGDDLFHWQATIMGPPDSAYQGGVFFLTVHFPT
                 10        20        30        40        50        

               70        80        90       100       110       120
pF1KB8 EYPMAAPKVRFMTKIYHPNVDKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDP
       .::.  ::. : :::::::... : ::::::...::::: .  ::::: .::  ::::::
CCDS72 DYPFKPPKIAFTTKIYHPNINSNGSICLDILRSQWSPALTVSKVLLSICSLLCDPNPDDP
       60        70        80        90       100       110        

              130       140       150  
pF1KB8 LANDVAEQWKTNEAQAIETARAWTRLYAMNNI
       :. :.:. .:... .  . :: ::. :::   
CCDS72 LVPDIAQIYKSDKEKYNRHAREWTQKYAM   
      120       130       140          

>>CCDS3659.1 UBE2D3 gene_id:7323|Hs108|chr4               (149 aa)
 initn: 427 init1: 427 opt: 444  Z-score: 570.3  bits: 111.6 E(32554): 1.9e-25
Smith-Waterman score: 444; 46.4% identity (72.9% similar) in 140 aa overlap (10-149:10-149)

               10        20        30        40        50        60
pF1KB8 MAGLPRRIIKETQRLLAEPVPGIKAEPDESNARYFHVVIAGPQDSPFEGGTFKLELFLPE
                :: . :  .:    .: :  ..  .....: ::.:::..::.: : . .: 
CCDS36 MLSNRKCLSKELSDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPT
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB8 EYPMAAPKVRFMTKIYHPNVDKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDP
       .::.  ::: : :.:::::... : ::::::...::::: :  ::::: .::  ::::::
CCDS36 DYPFKPPKVAFTTRIYHPNINSNGSICLDILRSQWSPALTISKVLLSICSLLCDPNPDDP
               70        80        90       100       110       120

              130       140       150  
pF1KB8 LANDVAEQWKTNEAQAIETARAWTRLYAMNNI
       :. ..:. .::.. .  . .: ::. :::   
CCDS36 LVPEIARIYKTDRDKYNRISREWTQKYAM   
              130       140            

>>CCDS33976.1 UBE2K gene_id:3093|Hs108|chr4               (200 aa)
 initn: 439 init1: 244 opt: 444  Z-score: 568.3  bits: 111.6 E(32554): 2.5e-25
Smith-Waterman score: 444; 47.9% identity (72.9% similar) in 144 aa overlap (6-148:10-153)

                   10        20        30        40        50      
pF1KB8     MAGLPRRIIKETQRLLAEPVPGIKAEPDESNARYFHVVIAGPQDSPFEGGTFKLEL
                .: .::. .        ::..  . :   ..  :::: :.:.::: ..::.
CCDS33 MANIAVQRIKREFKEVLKSEETSKNQIKVDLVDENFTELRGEIAGPPDTPYEGGRYQLEI
               10        20        30        40        50        60

         60        70        80         90       100       110     
pF1KB8 FLPEEYPMAAPKVRFMTKIYHPNVDKL-GRICLDILKDKWSPALQIRTVLLSIQALLSAP
        .:: ::.  :::::.:::.:::.... : ::::::::.:. :. .::::::.::::.: 
CCDS33 KIPETYPFNPPKVRFITKIWHPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQALLAAA
               70        80        90       100       110       120

         120       130       140       150                         
pF1KB8 NPDDPLANDVAEQWKTNEAQAIETARAWTRLYAMNNI                       
       .::::    ::.:.: :  .  .::: :...::                           
CCDS33 EPDDPQDAVVANQYKQNPEMFKQTARLWAHVYAGAPVSSPEYTKKIENLCAMGFDRNAVI
              130       140       150       160       170       180

CCDS33 VALSSKSWDVETATELLLSN
              190       200

>>CCDS47275.1 UBE2D2 gene_id:7322|Hs108|chr5              (118 aa)
 initn: 432 init1: 432 opt: 432  Z-score: 556.7  bits: 108.7 E(32554): 1.1e-24
Smith-Waterman score: 432; 51.7% identity (78.4% similar) in 116 aa overlap (34-149:3-118)

            10        20        30        40        50        60   
pF1KB8 LPRRIIKETQRLLAEPVPGIKAEPDESNARYFHVVIAGPQDSPFEGGTFKLELFLPEEYP
                                     .....: ::.:::..::.: : . .: .::
CCDS47                             MFHWQATIMGPNDSPYQGGVFFLTIHFPTDYP
                                           10        20        30  

            70        80        90       100       110       120   
pF1KB8 MAAPKVRFMTKIYHPNVDKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLAN
       .  ::: : :.:::::... : ::::::...::::: :  ::::: .::  :::::::. 
CCDS47 FKPPKVAFTTRIYHPNINSNGSICLDILRSQWSPALTISKVLLSICSLLCDPNPDDPLVP
             40        50        60        70        80        90  

           130       140       150  
pF1KB8 DVAEQWKTNEAQAIETARAWTRLYAMNNI
       ..:. .::.. .  . :: ::. :::   
CCDS47 EIARIYKTDREKYNRIAREWTQKYAM   
            100       110           




152 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 09:37:53 2016 done: Fri Nov  4 09:37:53 2016
 Total Scan time:  1.820 Total Display time: -0.030

Function used was FASTA [36.3.4 Apr, 2011]
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