FASTA searches a protein or DNA sequence data bank version 34.26.5 April 26, 2007
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
pF1KB7518, 246 aa
vs nr library
2037593458 residues in 5938498 sequences
statistics sampled from 60000 to 5937854 sequences
Expectation_n fit: rho(ln(x))= 5.1474+/-0.000189; mu= 9.2084+/- 0.011
mean_var=74.2296+/-14.549, 0's: 39 Z-trim: 40 B-trim: 1844 in 1/64
Lambda= 0.148863
FASTA (3.5 Sept 2006) function [optimized, BL50 matrix (15:-5)] ktup: 2
join: 36, opt: 24, open/ext: -10/-2, width: 16
The best scores are: opt bits E(5938498)
gi|29840782|sp|O75586|MED6_HUMAN Mediator of RNA p ( 246) 1657 364.5 6.7e-99
gi|30583885|gb|AAP36191.1| Homo sapiens mediator o ( 247) 1657 364.5 6.7e-99
gi|114653730|ref|XP_001146303.1| PREDICTED: hypoth ( 246) 1656 364.3 7.8e-99
gi|158254726|dbj|BAF83336.1| unnamed protein produ ( 246) 1652 363.4 1.4e-98
gi|62510774|sp|Q5RD94|MED6_PONPY Mediator of RNA p ( 246) 1650 363.0 1.9e-98
gi|62896733|dbj|BAD96307.1| mediator of RNA polyme ( 246) 1648 362.6 2.6e-98
gi|62898253|dbj|BAD97066.1| mediator of RNA polyme ( 246) 1646 362.2 3.4e-98
gi|3329506|gb|AAC26869.1| RNA polymerase transcrip ( 246) 1645 361.9 4e-98
gi|109084155|ref|XP_001082932.1| PREDICTED: mediat ( 246) 1640 360.9 8.4e-98
gi|114653734|ref|XP_001146137.1| PREDICTED: hypoth ( 253) 1632 359.2 2.8e-97
gi|73964257|ref|XP_547885.2| PREDICTED: similar to ( 246) 1607 353.8 1.1e-95
gi|149737483|ref|XP_001487966.1| PREDICTED: simila ( 246) 1605 353.3 1.5e-95
gi|5360103|gb|AAD42870.1|AF155104_1 NY-REN-28 anti ( 237) 1600 352.3 3.1e-95
gi|122140305|sp|Q3SZY9|MED6_BOVIN Mediator of RNA ( 246) 1595 351.2 6.8e-95
gi|158564080|sp|Q921D4|MED6_MOUSE Mediator of RNA ( 246) 1595 351.2 6.8e-95
gi|149025061|gb|EDL81428.1| mediator of RNA polyme ( 246) 1586 349.3 2.6e-94
gi|126282430|ref|XP_001368585.1| PREDICTED: hypoth ( 246) 1559 343.5 1.4e-92
gi|118091703|ref|XP_423945.2| PREDICTED: similar t ( 246) 1523 335.7 3.1e-90
gi|62858787|ref|NP_001016292.1| mediator of RNA po ( 246) 1476 325.6 3.4e-87
gi|74152816|dbj|BAE42663.1| unnamed protein produc ( 220) 1382 305.4 3.7e-81
gi|82184956|sp|Q6IQ63|MED6_DANRE Mediator of RNA p ( 254) 1314 290.9 1e-76
gi|119601445|gb|EAW81039.1| mediator of RNA polyme ( 195) 1310 289.9 1.5e-76
gi|114653736|ref|XP_001146221.1| PREDICTED: hypoth ( 195) 1309 289.7 1.8e-76
gi|119601447|gb|EAW81041.1| mediator of RNA polyme ( 206) 1304 288.6 3.9e-76
gi|11231121|dbj|BAB18155.1| hypothetical protein [ ( 195) 1298 287.3 9.1e-76
gi|109084161|ref|XP_001082533.1| PREDICTED: mediat ( 202) 1274 282.2 3.3e-74
gi|15341839|gb|AAH13096.1| Mediator of RNA polymer ( 195) 1248 276.6 1.5e-72
gi|149025060|gb|EDL81427.1| mediator of RNA polyme ( 195) 1239 274.7 5.9e-72
gi|118106699|ref|XP_422901.2| PREDICTED: hypotheti ( 190) 1222 271.0 7.3e-71
gi|26354242|dbj|BAC40749.1| unnamed protein produc ( 162) 1093 243.2 1.4e-62
gi|148670770|gb|EDL02717.1| mediator of RNA polyme ( 181) 1070 238.3 4.7e-61
gi|149025062|gb|EDL81429.1| mediator of RNA polyme ( 196) 1065 237.3 1.1e-60
gi|2618738|gb|AAB84363.1| RNA polymerase transcrip ( 157) 1061 236.4 1.6e-60
gi|109084163|ref|XP_001082406.1| PREDICTED: mediat ( 157) 1056 235.3 3.4e-60
gi|149478980|ref|XP_001516878.1| PREDICTED: simila ( 154) 938 209.9 1.4e-52
gi|72111294|ref|XP_787850.1| PREDICTED: similar to ( 312) 924 207.2 2e-51
gi|91087181|ref|XP_975417.1| PREDICTED: similar to ( 250) 909 203.9 1.5e-50
gi|158563990|sp|Q7Q107|MED6_ANOGA Mediator of RNA ( 267) 852 191.7 7.9e-47
gi|156543394|ref|XP_001600142.1| PREDICTED: simila ( 229) 838 188.6 5.6e-46
gi|110756748|ref|XP_624826.2| PREDICTED: similar t ( 213) 831 187.1 1.5e-45
gi|74932477|sp|Q8MSX2|MED6_DROME Mediator of RNA p ( 249) 740 167.6 1.3e-39
gi|119601448|gb|EAW81042.1| mediator of RNA polyme ( 106) 714 161.7 3.2e-38
gi|54638327|gb|EAL27729.1| GA21815-PA [Drosophila ( 251) 716 162.4 4.7e-38
gi|47221313|emb|CAG13249.1| unnamed protein produc ( 265) 699 158.8 6.1e-37
gi|108876218|gb|EAT40443.1| conserved hypothetical ( 208) 556 128.0 8.9e-28
gi|156226028|gb|EDO46841.1| predicted protein [Nem ( 262) 543 125.3 7.3e-27
gi|2618736|gb|AAB84362.1| RNA polymerase transcrip ( 246) 464 108.3 9e-22
gi|75022853|sp|Q9N337|MED6_CAEEL Mediator of RNA p ( 250) 464 108.3 9.1e-22
gi|158590941|gb|EDP29556.1| MED6 mediator sub comp ( 330) 442 103.7 3e-20
gi|74789362|sp|Q60WM1|MED6_CAEBR Mediator of RNA p ( 246) 426 100.1 2.6e-19
>>gi|29840782|sp|O75586|MED6_HUMAN Mediator of RNA polym (246 aa)
initn: 1657 init1: 1657 opt: 1657 Z-score: 1929.7 bits: 364.5 E(): 6.7e-99
Smith-Waterman score: 1657; 100.000% identity (100.000% similar) in 246 aa overlap (1-246:1-246)
10 20 30 40 50 60
pF1KB7 MAAVDIRDNLLGISWVDSSWIPILNSGSVLDYFSERSNPFYDRTCNNEVVKMQRLTLEHL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
gi|298 MAAVDIRDNLLGISWVDSSWIPILNSGSVLDYFSERSNPFYDRTCNNEVVKMQRLTLEHL
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB7 NQMVGIEYILLHAQEPILFIIRKQQRQSPAQVIPLADYYIIAGVIYQAPDLGSVINSRVL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
gi|298 NQMVGIEYILLHAQEPILFIIRKQQRQSPAQVIPLADYYIIAGVIYQAPDLGSVINSRVL
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB7 TAVHGIQSAFDEAMSYCRYHPSKGYWWHFKDHEEQDKVRPKAKRKEEPSSIFQRQRVDAL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
gi|298 TAVHGIQSAFDEAMSYCRYHPSKGYWWHFKDHEEQDKVRPKAKRKEEPSSIFQRQRVDAL
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB7 LLDLRQKFPPKFVQLKPGEKPVPVDQTKKEAEPIPETVKPEEKETTKNVQQTVSAKGPPE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
gi|298 LLDLRQKFPPKFVQLKPGEKPVPVDQTKKEAEPIPETVKPEEKETTKNVQQTVSAKGPPE
190 200 210 220 230 240
pF1KB7 KRMRLQ
::::::
gi|298 KRMRLQ
>>gi|30583885|gb|AAP36191.1| Homo sapiens mediator of RN (247 aa)
initn: 1657 init1: 1657 opt: 1657 Z-score: 1929.6 bits: 364.5 E(): 6.7e-99
Smith-Waterman score: 1657; 100.000% identity (100.000% similar) in 246 aa overlap (1-246:1-246)
10 20 30 40 50 60
pF1KB7 MAAVDIRDNLLGISWVDSSWIPILNSGSVLDYFSERSNPFYDRTCNNEVVKMQRLTLEHL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
gi|305 MAAVDIRDNLLGISWVDSSWIPILNSGSVLDYFSERSNPFYDRTCNNEVVKMQRLTLEHL
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB7 NQMVGIEYILLHAQEPILFIIRKQQRQSPAQVIPLADYYIIAGVIYQAPDLGSVINSRVL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
gi|305 NQMVGIEYILLHAQEPILFIIRKQQRQSPAQVIPLADYYIIAGVIYQAPDLGSVINSRVL
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB7 TAVHGIQSAFDEAMSYCRYHPSKGYWWHFKDHEEQDKVRPKAKRKEEPSSIFQRQRVDAL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
gi|305 TAVHGIQSAFDEAMSYCRYHPSKGYWWHFKDHEEQDKVRPKAKRKEEPSSIFQRQRVDAL
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB7 LLDLRQKFPPKFVQLKPGEKPVPVDQTKKEAEPIPETVKPEEKETTKNVQQTVSAKGPPE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
gi|305 LLDLRQKFPPKFVQLKPGEKPVPVDQTKKEAEPIPETVKPEEKETTKNVQQTVSAKGPPE
190 200 210 220 230 240
pF1KB7 KRMRLQ
::::::
gi|305 KRMRLQL
>>gi|114653730|ref|XP_001146303.1| PREDICTED: hypothetic (246 aa)
initn: 1656 init1: 1656 opt: 1656 Z-score: 1928.5 bits: 364.3 E(): 7.8e-99
Smith-Waterman score: 1656; 99.593% identity (100.000% similar) in 246 aa overlap (1-246:1-246)
10 20 30 40 50 60
pF1KB7 MAAVDIRDNLLGISWVDSSWIPILNSGSVLDYFSERSNPFYDRTCNNEVVKMQRLTLEHL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
gi|114 MAAVDIRDNLLGISWVDSSWIPILNSGSVLDYFSERSNPFYDRTCNNEVVKMQRLTLEHL
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB7 NQMVGIEYILLHAQEPILFIIRKQQRQSPAQVIPLADYYIIAGVIYQAPDLGSVINSRVL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
gi|114 NQMVGIEYILLHAQEPILFIIRKQQRQSPAQVIPLADYYIIAGVIYQAPDLGSVINSRVL
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB7 TAVHGIQSAFDEAMSYCRYHPSKGYWWHFKDHEEQDKVRPKAKRKEEPSSIFQRQRVDAL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
gi|114 TAVHGIQSAFDEAMSYCRYHPSKGYWWHFKDHEEQDKVRPKAKRKEEPSSIFQRQRVDAL
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB7 LLDLRQKFPPKFVQLKPGEKPVPVDQTKKEAEPIPETVKPEEKETTKNVQQTVSAKGPPE
:::::::::::::::::::::::::::::::::.::::::::::::::::::::::::::
gi|114 LLDLRQKFPPKFVQLKPGEKPVPVDQTKKEAEPVPETVKPEEKETTKNVQQTVSAKGPPE
190 200 210 220 230 240
pF1KB7 KRMRLQ
::::::
gi|114 KRMRLQ
>>gi|158254726|dbj|BAF83336.1| unnamed protein product [ (246 aa)
initn: 1652 init1: 1652 opt: 1652 Z-score: 1923.9 bits: 363.4 E(): 1.4e-98
Smith-Waterman score: 1652; 99.593% identity (100.000% similar) in 246 aa overlap (1-246:1-246)
10 20 30 40 50 60
pF1KB7 MAAVDIRDNLLGISWVDSSWIPILNSGSVLDYFSERSNPFYDRTCNNEVVKMQRLTLEHL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
gi|158 MAAVDIRDNLLGISWVDSSWIPILNSGSVLDYFSERSNPFYDRTCNNEVVKMQRLTLEHL
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB7 NQMVGIEYILLHAQEPILFIIRKQQRQSPAQVIPLADYYIIAGVIYQAPDLGSVINSRVL
::::::.:::::::::::::::::::::::::::::::::::::::::::::::::::::
gi|158 NQMVGIKYILLHAQEPILFIIRKQQRQSPAQVIPLADYYIIAGVIYQAPDLGSVINSRVL
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB7 TAVHGIQSAFDEAMSYCRYHPSKGYWWHFKDHEEQDKVRPKAKRKEEPSSIFQRQRVDAL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
gi|158 TAVHGIQSAFDEAMSYCRYHPSKGYWWHFKDHEEQDKVRPKAKRKEEPSSIFQRQRVDAL
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB7 LLDLRQKFPPKFVQLKPGEKPVPVDQTKKEAEPIPETVKPEEKETTKNVQQTVSAKGPPE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
gi|158 LLDLRQKFPPKFVQLKPGEKPVPVDQTKKEAEPIPETVKPEEKETTKNVQQTVSAKGPPE
190 200 210 220 230 240
pF1KB7 KRMRLQ
::::::
gi|158 KRMRLQ
>>gi|62510774|sp|Q5RD94|MED6_PONPY Mediator of RNA polym (246 aa)
initn: 1650 init1: 1650 opt: 1650 Z-score: 1921.5 bits: 363.0 E(): 1.9e-98
Smith-Waterman score: 1650; 99.187% identity (100.000% similar) in 246 aa overlap (1-246:1-246)
10 20 30 40 50 60
pF1KB7 MAAVDIRDNLLGISWVDSSWIPILNSGSVLDYFSERSNPFYDRTCNNEVVKMQRLTLEHL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
gi|625 MAAVDIRDNLLGISWVDSSWIPILNSGSVLDYFSERSNPFYDRTCNNEVVKMQRLTLEHL
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB7 NQMVGIEYILLHAQEPILFIIRKQQRQSPAQVIPLADYYIIAGVIYQAPDLGSVINSRVL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
gi|625 NQMVGIEYILLHAQEPILFIIRKQQRQSPAQVIPLADYYIIAGVIYQAPDLGSVINSRVL
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB7 TAVHGIQSAFDEAMSYCRYHPSKGYWWHFKDHEEQDKVRPKAKRKEEPSSIFQRQRVDAL
::::::::::::::::::::::::::::::.:::::::::::::::::::::::::::::
gi|625 TAVHGIQSAFDEAMSYCRYHPSKGYWWHFKEHEEQDKVRPKAKRKEEPSSIFQRQRVDAL
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB7 LLDLRQKFPPKFVQLKPGEKPVPVDQTKKEAEPIPETVKPEEKETTKNVQQTVSAKGPPE
:::::::::::::::::::::::::::::::::.::::::::::::::::::::::::::
gi|625 LLDLRQKFPPKFVQLKPGEKPVPVDQTKKEAEPVPETVKPEEKETTKNVQQTVSAKGPPE
190 200 210 220 230 240
pF1KB7 KRMRLQ
::::::
gi|625 KRMRLQ
>>gi|62896733|dbj|BAD96307.1| mediator of RNA polymerase (246 aa)
initn: 1648 init1: 1648 opt: 1648 Z-score: 1919.2 bits: 362.6 E(): 2.6e-98
Smith-Waterman score: 1648; 99.593% identity (99.593% similar) in 246 aa overlap (1-246:1-246)
10 20 30 40 50 60
pF1KB7 MAAVDIRDNLLGISWVDSSWIPILNSGSVLDYFSERSNPFYDRTCNNEVVKMQRLTLEHL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
gi|628 MAAVDIRDNLLGISWVDSSWIPILNSGSVLDYFSERSNPFYDRTCNNEVVKMQRLTLEHL
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB7 NQMVGIEYILLHAQEPILFIIRKQQRQSPAQVIPLADYYIIAGVIYQAPDLGSVINSRVL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
gi|628 NQMVGIEYILLHAQEPILFIIRKQQRQSPAQVIPLADYYIIAGVIYQAPDLGSVINSRVL
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB7 TAVHGIQSAFDEAMSYCRYHPSKGYWWHFKDHEEQDKVRPKAKRKEEPSSIFQRQRVDAL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
gi|628 TAVHGIQSAFDEAMSYCRYHPSKGYWWHFKDHEEQDKVRPKAKRKEEPSSIFQRQRVDAL
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB7 LLDLRQKFPPKFVQLKPGEKPVPVDQTKKEAEPIPETVKPEEKETTKNVQQTVSAKGPPE
::::::::::::::::::::::::::::::::::::::::::: ::::::::::::::::
gi|628 LLDLRQKFPPKFVQLKPGEKPVPVDQTKKEAEPIPETVKPEEKGTTKNVQQTVSAKGPPE
190 200 210 220 230 240
pF1KB7 KRMRLQ
::::::
gi|628 KRMRLQ
>>gi|62898253|dbj|BAD97066.1| mediator of RNA polymerase (246 aa)
initn: 1646 init1: 1646 opt: 1646 Z-score: 1916.9 bits: 362.2 E(): 3.4e-98
Smith-Waterman score: 1646; 99.593% identity (99.593% similar) in 246 aa overlap (1-246:1-246)
10 20 30 40 50 60
pF1KB7 MAAVDIRDNLLGISWVDSSWIPILNSGSVLDYFSERSNPFYDRTCNNEVVKMQRLTLEHL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
gi|628 MAAVDIRDNLLGISWVDSSWIPILNSGSVLDYFSERSNPFYDRTCNNEVVKMQRLTLEHL
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB7 NQMVGIEYILLHAQEPILFIIRKQQRQSPAQVIPLADYYIIAGVIYQAPDLGSVINSRVL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
gi|628 NQMVGIEYILLHAQEPILFIIRKQQRQSPAQVIPLADYYIIAGVIYQAPDLGSVINSRVL
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB7 TAVHGIQSAFDEAMSYCRYHPSKGYWWHFKDHEEQDKVRPKAKRKEEPSSIFQRQRVDAL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
gi|628 TAVHGIQSAFDEAMSYCRYHPSKGYWWHFKDHEEQDKVRPKAKRKEEPSSIFQRQRVDAL
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB7 LLDLRQKFPPKFVQLKPGEKPVPVDQTKKEAEPIPETVKPEEKETTKNVQQTVSAKGPPE
:::::::::::::::::::::: :::::::::::::::::::::::::::::::::::::
gi|628 LLDLRQKFPPKFVQLKPGEKPVSVDQTKKEAEPIPETVKPEEKETTKNVQQTVSAKGPPE
190 200 210 220 230 240
pF1KB7 KRMRLQ
::::::
gi|628 KRMRLQ
>>gi|3329506|gb|AAC26869.1| RNA polymerase transcription (246 aa)
initn: 1645 init1: 1645 opt: 1645 Z-score: 1915.7 bits: 361.9 E(): 4e-98
Smith-Waterman score: 1645; 99.593% identity (99.593% similar) in 246 aa overlap (1-246:1-246)
10 20 30 40 50 60
pF1KB7 MAAVDIRDNLLGISWVDSSWIPILNSGSVLDYFSERSNPFYDRTCNNEVVKMQRLTLEHL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
gi|332 MAAVDIRDNLLGISWVDSSWIPILNSGSVLDYFSERSNPFYDRTCNNEVVKMQRLTLEHL
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB7 NQMVGIEYILLHAQEPILFIIRKQQRQSPAQVIPLADYYIIAGVIYQAPDLGSVINSRVL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
gi|332 NQMVGIEYILLHAQEPILFIIRKQQRQSPAQVIPLADYYIIAGVIYQAPDLGSVINSRVL
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB7 TAVHGIQSAFDEAMSYCRYHPSKGYWWHFKDHEEQDKVRPKAKRKEEPSSIFQRQRVDAL
:::::::::::::::::::::::::::::: :::::::::::::::::::::::::::::
gi|332 TAVHGIQSAFDEAMSYCRYHPSKGYWWHFKVHEEQDKVRPKAKRKEEPSSIFQRQRVDAL
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB7 LLDLRQKFPPKFVQLKPGEKPVPVDQTKKEAEPIPETVKPEEKETTKNVQQTVSAKGPPE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
gi|332 LLDLRQKFPPKFVQLKPGEKPVPVDQTKKEAEPIPETVKPEEKETTKNVQQTVSAKGPPE
190 200 210 220 230 240
pF1KB7 KRMRLQ
::::::
gi|332 KRMRLQ
>>gi|109084155|ref|XP_001082932.1| PREDICTED: mediator o (246 aa)
initn: 1640 init1: 1640 opt: 1640 Z-score: 1909.9 bits: 360.9 E(): 8.4e-98
Smith-Waterman score: 1640; 98.780% identity (99.593% similar) in 246 aa overlap (1-246:1-246)
10 20 30 40 50 60
pF1KB7 MAAVDIRDNLLGISWVDSSWIPILNSGSVLDYFSERSNPFYDRTCNNEVVKMQRLTLEHL
::.:::::::::::::::::::::::::::::::::::::::::::::::::::::::::
gi|109 MAGVDIRDNLLGISWVDSSWIPILNSGSVLDYFSERSNPFYDRTCNNEVVKMQRLTLEHL
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB7 NQMVGIEYILLHAQEPILFIIRKQQRQSPAQVIPLADYYIIAGVIYQAPDLGSVINSRVL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
gi|109 NQMVGIEYILLHAQEPILFIIRKQQRQSPAQVIPLADYYIIAGVIYQAPDLGSVINSRVL
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB7 TAVHGIQSAFDEAMSYCRYHPSKGYWWHFKDHEEQDKVRPKAKRKEEPSSIFQRQRVDAL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
gi|109 TAVHGIQSAFDEAMSYCRYHPSKGYWWHFKDHEEQDKVRPKAKRKEEPSSIFQRQRVDAL
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB7 LLDLRQKFPPKFVQLKPGEKPVPVDQTKKEAEPIPETVKPEEKETTKNVQQTVSAKGPPE
:::::::::::::::::::::::::::::::::.::::: ::::::::::::::::::::
gi|109 LLDLRQKFPPKFVQLKPGEKPVPVDQTKKEAEPVPETVKSEEKETTKNVQQTVSAKGPPE
190 200 210 220 230 240
pF1KB7 KRMRLQ
::::::
gi|109 KRMRLQ
>>gi|114653734|ref|XP_001146137.1| PREDICTED: hypothetic (253 aa)
initn: 1642 init1: 873 opt: 1632 Z-score: 1900.5 bits: 359.2 E(): 2.8e-97
Smith-Waterman score: 1632; 96.838% identity (97.233% similar) in 253 aa overlap (1-246:1-253)
10 20 30 40 50 60
pF1KB7 MAAVDIRDNLLGISWVDSSWIPILNSGSVLDYFSERSNPFYDRTCNNEVVKMQRLTLEHL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
gi|114 MAAVDIRDNLLGISWVDSSWIPILNSGSVLDYFSERSNPFYDRTCNNEVVKMQRLTLEHL
10 20 30 40 50 60
70 80 90 100 110
pF1KB7 NQMVGIEYILLHAQEPILFIIRKQQRQSPAQVIPLADYYIIAGVIYQAPDLGSVINSRV-
:::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
gi|114 NQMVGIEYILLHAQEPILFIIRKQQRQSPAQVIPLADYYIIAGVIYQAPDLGSVINSRVN
70 80 90 100 110 120
120 130 140 150 160 170
pF1KB7 ------LTAVHGIQSAFDEAMSYCRYHPSKGYWWHFKDHEEQDKVRPKAKRKEEPSSIFQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::
gi|114 LFSFYKLTAVHGIQSAFDEAMSYCRYHPSKGYWWHFKDHEEQDKVRPKAKRKEEPSSIFQ
130 140 150 160 170 180
180 190 200 210 220 230
pF1KB7 RQRVDALLLDLRQKFPPKFVQLKPGEKPVPVDQTKKEAEPIPETVKPEEKETTKNVQQTV
::::::::::::::::::::::::::::::::::::::::.:::::::::::::::::::
gi|114 RQRVDALLLDLRQKFPPKFVQLKPGEKPVPVDQTKKEAEPVPETVKPEEKETTKNVQQTV
190 200 210 220 230 240
240
pF1KB7 SAKGPPEKRMRLQ
:::::::::::::
gi|114 SAKGPPEKRMRLQ
250
246 residues in 1 query sequences
2037593458 residues in 5938498 library sequences
Tcomplib [34.26] (6 proc)
start: Fri Mar 7 04:06:05 2008 done: Fri Mar 7 04:08:43 2008
Total Scan time: 603.600 Total Display time: 0.040
Function used was FASTA [version 34.26.5 April 26, 2007]