hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /data/Pfam.bin
Sequence file:            /tmp/20080307/iprscan-20080307-04084601/chunk_1/iprscan-20080307-04084601.nocrc
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Query sequence: pF1KB7518
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
PF04934.5.ls MED6 mediator sub complex component            229.5    6.9e-66   1
PF04934.5.fs MED6 mediator sub complex component            227.7    2.4e-65   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
PF04934.5.fs   1/1      52   151 ..     1   135 []   227.7  2.4e-65
PF04934.5.ls   1/1      52   151 ..     1   135 []   229.5  6.9e-66

Alignments of top-scoring domains:
PF04934.5.fs: domain 1 of 1, from 52 to 151: score 227.7, E = 2.4e-65
                   *->mQslvNqAmsqYlldrrlleshLkeMtGlEYillheqePiGPGmGtG
                      mQ              rl+++hL++M+G+EYillh+qePi       
   pF1KB7518    52    MQ--------------RLTLEHLNQMVGIEYILLHAQEPI------- 77   

                   LfVIrKQkRrnpePtnPARPEDGPPDeViPlavYYvinGnIYqAPdLasV
                   Lf+IrKQ+R++p+             +ViPla+YY+i+G+IYqAPdL+sV
   pF1KB7518    78 LFIIRKQQRQSPA-------------QVIPLADYYIIAGVIYQAPDLGSV 114  

                   laSRilnavyniqkAftevesysrYnPakGytyPefkn<-*
                   ++SR+l+av++iq+Af+e++sy+rY+P+kGy++ +fk+   
   pF1KB7518   115 INSRVLTAVHGIQSAFDEAMSYCRYHPSKGYWW-HFKD    151  

PF04934.5.ls: domain 1 of 1, from 52 to 151: score 229.5, E = 6.9e-66
                   *->mQslvNqAmsqYlldrrlleshLkeMtGlEYillheqePiGPGmGtG
                      mQ              rl+++hL++M+G+EYillh+qePi       
   pF1KB7518    52    MQ--------------RLTLEHLNQMVGIEYILLHAQEPI------- 77   

                   LfVIrKQkRrnpePtnPARPEDGPPDeViPlavYYvinGnIYqAPdLasV
                   Lf+IrKQ+R++p+             +ViPla+YY+i+G+IYqAPdL+sV
   pF1KB7518    78 LFIIRKQQRQSPA-------------QVIPLADYYIIAGVIYQAPDLGSV 114  

                   laSRilnavyniqkAftevesysrYnPakGytyPefkn<-*
                   ++SR+l+av++iq+Af+e++sy+rY+P+kGy++ +fk+   
   pF1KB7518   115 INSRVLTAVHGIQSAFDEAMSYCRYHPSKGYWW-HFKD    151  

//