Result of FASTA (omim) for pF1KB7516
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB7516, 246 aa
  1>>>pF1KB7516 246 - 246 aa - 246 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 7.2297+/-0.000376; mu= 6.5245+/- 0.023
 mean_var=153.1489+/-30.348, 0's: 0 Z-trim(117.6): 84  B-trim: 0 in 0/55
 Lambda= 0.103638
 statistics sampled from 29590 (29675) to 29590 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.719), E-opt: 0.2 (0.348), width:  16
 Scan time:  7.160

The best scores are:                                      opt bits E(85289)
NP_003192 (OMIM: 600438,617156) transcription fact ( 246) 1643 257.0 2.3e-68
NP_001257711 (OMIM: 600438,617156) transcription f ( 214)  992 159.6 4.1e-39
XP_011538422 (OMIM: 600438,617156) PREDICTED: tran ( 149)  987 158.7 5.2e-39
XP_011538423 (OMIM: 600438,617156) PREDICTED: tran ( 148)  986 158.6 5.8e-39
NP_001137447 (OMIM: 613696) upstream-binding facto ( 393)  210 42.9   0.001


>>NP_003192 (OMIM: 600438,617156) transcription factor A  (246 aa)
 initn: 1643 init1: 1643 opt: 1643  Z-score: 1348.4  bits: 257.0 E(85289): 2.3e-68
Smith-Waterman score: 1643; 100.0% identity (100.0% similar) in 246 aa overlap (1-246:1-246)

               10        20        30        40        50        60
pF1KB7 MAFLRSMWGVLSALGRSGAELCTGCGSRLRSPFSFVYLPRWFSSVLASCPKKPVSSYLRF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_003 MAFLRSMWGVLSALGRSGAELCTGCGSRLRSPFSFVYLPRWFSSVLASCPKKPVSSYLRF
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB7 SKEQLPIFKAQNPDAKTTELIRRIAQRWRELPDSKKKIYQDAYRAEWQVYKEEISRFKEQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_003 SKEQLPIFKAQNPDAKTTELIRRIAQRWRELPDSKKKIYQDAYRAEWQVYKEEISRFKEQ
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB7 LTPSQIMSLEKEIMDKHLKRKAMTKKKELTLLGKPKRPRSAYNVYVAERFQEAKGDSPQE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_003 LTPSQIMSLEKEIMDKHLKRKAMTKKKELTLLGKPKRPRSAYNVYVAERFQEAKGDSPQE
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB7 KLKTVKENWKNLSDSEKELYIQHAKEDETRYHNEMKSWEEQMIEVGRKDLLRRTIKKQRK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_003 KLKTVKENWKNLSDSEKELYIQHAKEDETRYHNEMKSWEEQMIEVGRKDLLRRTIKKQRK
              190       200       210       220       230       240

             
pF1KB7 YGAEEC
       ::::::
NP_003 YGAEEC
             

>>NP_001257711 (OMIM: 600438,617156) transcription facto  (214 aa)
 initn: 992 init1: 992 opt: 992  Z-score: 823.2  bits: 159.6 E(85289): 4.1e-39
Smith-Waterman score: 1358; 87.0% identity (87.0% similar) in 246 aa overlap (1-246:1-214)

               10        20        30        40        50        60
pF1KB7 MAFLRSMWGVLSALGRSGAELCTGCGSRLRSPFSFVYLPRWFSSVLASCPKKPVSSYLRF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MAFLRSMWGVLSALGRSGAELCTGCGSRLRSPFSFVYLPRWFSSVLASCPKKPVSSYLRF
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB7 SKEQLPIFKAQNPDAKTTELIRRIAQRWRELPDSKKKIYQDAYRAEWQVYKEEISRFKEQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 SKEQLPIFKAQNPDAKTTELIRRIAQRWRELPDSKKKIYQDAYRAEWQVYKEEISRFKEQ
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB7 LTPSQIMSLEKEIMDKHLKRKAMTKKKELTLLGKPKRPRSAYNVYVAERFQEAKGDSPQE
       ::::::::::::::::::::::::::::                                
NP_001 LTPSQIMSLEKEIMDKHLKRKAMTKKKE--------------------------------
              130       140                                        

              190       200       210       220       230       240
pF1KB7 KLKTVKENWKNLSDSEKELYIQHAKEDETRYHNEMKSWEEQMIEVGRKDLLRRTIKKQRK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 KLKTVKENWKNLSDSEKELYIQHAKEDETRYHNEMKSWEEQMIEVGRKDLLRRTIKKQRK
      150       160       170       180       190       200        

             
pF1KB7 YGAEEC
       ::::::
NP_001 YGAEEC
      210    

>>XP_011538422 (OMIM: 600438,617156) PREDICTED: transcri  (149 aa)
 initn: 1009 init1: 987 opt: 987  Z-score: 821.3  bits: 158.7 E(85289): 5.2e-39
Smith-Waterman score: 987; 99.3% identity (100.0% similar) in 148 aa overlap (1-148:1-148)

               10        20        30        40        50        60
pF1KB7 MAFLRSMWGVLSALGRSGAELCTGCGSRLRSPFSFVYLPRWFSSVLASCPKKPVSSYLRF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 MAFLRSMWGVLSALGRSGAELCTGCGSRLRSPFSFVYLPRWFSSVLASCPKKPVSSYLRF
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB7 SKEQLPIFKAQNPDAKTTELIRRIAQRWRELPDSKKKIYQDAYRAEWQVYKEEISRFKEQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 SKEQLPIFKAQNPDAKTTELIRRIAQRWRELPDSKKKIYQDAYRAEWQVYKEEISRFKEQ
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB7 LTPSQIMSLEKEIMDKHLKRKAMTKKKELTLLGKPKRPRSAYNVYVAERFQEAKGDSPQE
       :::::::::::::::::::::::::::.                                
XP_011 LTPSQIMSLEKEIMDKHLKRKAMTKKKKS                               
              130       140                                        

>>XP_011538423 (OMIM: 600438,617156) PREDICTED: transcri  (148 aa)
 initn: 986 init1: 986 opt: 986  Z-score: 820.5  bits: 158.6 E(85289): 5.8e-39
Smith-Waterman score: 986; 100.0% identity (100.0% similar) in 147 aa overlap (1-147:1-147)

               10        20        30        40        50        60
pF1KB7 MAFLRSMWGVLSALGRSGAELCTGCGSRLRSPFSFVYLPRWFSSVLASCPKKPVSSYLRF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 MAFLRSMWGVLSALGRSGAELCTGCGSRLRSPFSFVYLPRWFSSVLASCPKKPVSSYLRF
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB7 SKEQLPIFKAQNPDAKTTELIRRIAQRWRELPDSKKKIYQDAYRAEWQVYKEEISRFKEQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 SKEQLPIFKAQNPDAKTTELIRRIAQRWRELPDSKKKIYQDAYRAEWQVYKEEISRFKEQ
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB7 LTPSQIMSLEKEIMDKHLKRKAMTKKKELTLLGKPKRPRSAYNVYVAERFQEAKGDSPQE
       :::::::::::::::::::::::::::                                 
XP_011 LTPSQIMSLEKEIMDKHLKRKAMTKKKS                                
              130       140                                        

>>NP_001137447 (OMIM: 613696) upstream-binding factor 1-  (393 aa)
 initn: 192 init1: 192 opt: 210  Z-score: 187.8  bits: 42.9 E(85289): 0.001
Smith-Waterman score: 256; 23.8% identity (61.9% similar) in 189 aa overlap (50-218:100-287)

      20        30        40        50        60        70         
pF1KB7 ELCTGCGSRLRSPFSFVYLPRWFSSVLASCPKKPVSSYLRFSKEQLPIFKAQNPDAKTTE
                                     ::.:...: :: ::. : .. . :  .. :
NP_001 FGTLKELVLEAKKCVKKMNKSQKYRNGPDFPKRPLTAYNRFFKESWPQYSQMYPGMRSQE
      70        80        90       100       110       120         

      80        90       100       110       120       130         
pF1KB7 LIRRIAQRWRELPDSKKKIYQDAYRAEWQVYKEEISRFKEQLTPSQIMSLEKEIMDKHLK
       : . .....::::.. :. : . .: : : ..:...::.:.  :. ... .:  ..:. .
NP_001 LTKILSKKYRELPEQMKQKYIQDFRKEKQEFEEKLARFREE-HPDLVQKAKKSSVSKRTQ
     130       140       150       160       170        180        

     140                        150        160       170           
pF1KB7 RKAMTKK-----------------KELTLLGKPKRP-RSAYNVYVAERF--QEAKGDSPQ
        :.. :                  :.. . :.:..:  ..:. .  . .  .: .  : .
NP_001 NKVQKKFQKNIEEVRSLPKTDRFFKKVKFHGEPQKPPMNGYHKFHQDSWSSKEMQHLSVR
      190       200       210       220       230       240        

     180       190       200       210       220       230         
pF1KB7 EKLKTVKENWKNLSDSEKELYIQHAKEDETRYHNEMKSWEEQMIEVGRKDLLRRTIKKQR
       :..  . . :. . .:.:. . ..:.: . .:. ..  :                     
NP_001 ERMVEIGRRWQRIPQSQKDHFKSQAEELQKQYKVKLDLWLKTLSPENYAAYKESTYAKGK
      250       260       270       280       290       300        

     240                                                           
pF1KB7 KYGAEEC                                                     
                                                                   
NP_001 NMAMTGGPDPRLKQADPQSSSAKGLQEGFGEGQGLQAAGTDSSQTIWVNCHVSMEPEENR
      310       320       330       340       350       360        




246 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 08:22:31 2016 done: Fri Nov  4 08:22:32 2016
 Total Scan time:  7.160 Total Display time: -0.010

Function used was FASTA [36.3.4 Apr, 2011]
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