Result of FASTA (ccds) for pF1KB7261
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB7261, 196 aa
  1>>>pF1KB7261 196 - 196 aa - 196 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 4.8552+/-0.000692; mu= 16.4989+/- 0.042
 mean_var=71.4929+/-14.019, 0's: 0 Z-trim(110.2): 34  B-trim: 46 in 1/51
 Lambda= 0.151685
 statistics sampled from 11433 (11467) to 11433 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.735), E-opt: 0.2 (0.352), width:  16
 Scan time:  2.150

The best scores are:                                      opt bits E(32554)
CCDS47524.1 PDGFA gene_id:5154|Hs108|chr7          ( 196) 1313 295.7 1.2e-80
CCDS34578.1 PDGFA gene_id:5154|Hs108|chr7          ( 211) 1293 291.3 2.7e-79
CCDS13987.1 PDGFB gene_id:5155|Hs108|chr22         ( 241)  500 117.8 5.2e-27
CCDS33650.1 PDGFB gene_id:5155|Hs108|chr22         ( 226)  471 111.5   4e-25


>>CCDS47524.1 PDGFA gene_id:5154|Hs108|chr7               (196 aa)
 initn: 1313 init1: 1313 opt: 1313  Z-score: 1561.2  bits: 295.7 E(32554): 1.2e-80
Smith-Waterman score: 1313; 100.0% identity (100.0% similar) in 196 aa overlap (1-196:1-196)

               10        20        30        40        50        60
pF1KB7 MRTLACLLLLGCGYLAHVLAEEAEIPREVIERLARSQIHSIRDLQRLLEIDSVGSEDSLD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS47 MRTLACLLLLGCGYLAHVLAEEAEIPREVIERLARSQIHSIRDLQRLLEIDSVGSEDSLD
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB7 TSLRAHGVHATKHVPEKRPLPIRRKRSIEEAVPAVCKTRTVIYEIPRSQVDPTSANFLIW
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS47 TSLRAHGVHATKHVPEKRPLPIRRKRSIEEAVPAVCKTRTVIYEIPRSQVDPTSANFLIW
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB7 PPCVEVKRCTGCCNTSSVKCQPSRVHHRSVKVAKVEYVRKKPKLKEVQVRLEEHLECACA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS47 PPCVEVKRCTGCCNTSSVKCQPSRVHHRSVKVAKVEYVRKKPKLKEVQVRLEEHLECACA
              130       140       150       160       170       180

              190      
pF1KB7 TTSLNPDYREEDTDVR
       ::::::::::::::::
CCDS47 TTSLNPDYREEDTDVR
              190      

>>CCDS34578.1 PDGFA gene_id:5154|Hs108|chr7               (211 aa)
 initn: 1293 init1: 1293 opt: 1293  Z-score: 1537.1  bits: 291.3 E(32554): 2.7e-79
Smith-Waterman score: 1293; 100.0% identity (100.0% similar) in 193 aa overlap (1-193:1-193)

               10        20        30        40        50        60
pF1KB7 MRTLACLLLLGCGYLAHVLAEEAEIPREVIERLARSQIHSIRDLQRLLEIDSVGSEDSLD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 MRTLACLLLLGCGYLAHVLAEEAEIPREVIERLARSQIHSIRDLQRLLEIDSVGSEDSLD
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB7 TSLRAHGVHATKHVPEKRPLPIRRKRSIEEAVPAVCKTRTVIYEIPRSQVDPTSANFLIW
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 TSLRAHGVHATKHVPEKRPLPIRRKRSIEEAVPAVCKTRTVIYEIPRSQVDPTSANFLIW
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB7 PPCVEVKRCTGCCNTSSVKCQPSRVHHRSVKVAKVEYVRKKPKLKEVQVRLEEHLECACA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 PPCVEVKRCTGCCNTSSVKCQPSRVHHRSVKVAKVEYVRKKPKLKEVQVRLEEHLECACA
              130       140       150       160       170       180

              190                     
pF1KB7 TTSLNPDYREEDTDVR               
       :::::::::::::                  
CCDS34 TTSLNPDYREEDTGRPRESGKKRKRKRLKPT
              190       200       210 

>>CCDS13987.1 PDGFB gene_id:5155|Hs108|chr22              (241 aa)
 initn: 519 init1: 395 opt: 500  Z-score: 598.5  bits: 117.8 E(32554): 5.2e-27
Smith-Waterman score: 500; 46.4% identity (68.3% similar) in 183 aa overlap (7-183:7-184)

               10        20        30        40        50          
pF1KB7 MRTLACLLLLGCGYLAHVLAEEAEIPREVIERLARSQIHSIRDLQRLLEIDSVGSEDS--
             :.:  : ::  : ::   ::.:. : :.  .:.:. ::::::. :  : ::.  
CCDS13 MNRCWALFLSLCCYLRLVSAEGDPIPEELYEMLSDHSIRSFDDLQRLLHGDP-GEEDGAE
               10        20        30        40        50          

       60         70        80        90          100       110    
pF1KB7 LDTSL-RAHGVHATKHVPEKRPLPIRRKRSIEEAVPAV---CKTRTVIYEIPRSQVDPTS
       :: .. :.:.    . . . :    :   :.  : ::.   ::::: ..:: :  .: :.
CCDS13 LDLNMTRSHSGGELESLARGR----RSLGSLTIAEPAMIAECKTRTEVFEISRRLIDRTN
      60        70        80            90       100       110     

          120       130       140       150       160       170    
pF1KB7 ANFLIWPPCVEVKRCTGCCNTSSVKCQPSRVHHRSVKVAKVEYVRKKPKLKEVQVRLEEH
       ::::.:::::::.::.::::. .:.:.:..:. : :.: :.: ::::: .:.. : ::.:
CCDS13 ANFLVWPPCVEVQRCSGCCNNRNVQCRPTQVQLRPVQVRKIEIVRKKPIFKKATVTLEDH
         120       130       140       150       160       170     

          180       190                                            
pF1KB7 LECACATTSLNPDYREEDTDVR                                      
       : : : :..                                                   
CCDS13 LACKCETVAAARPVTRSPGGSQEQRAKTPQTRVTIRTVRVRRPPKGKHRKFKHTHDKTAL
         180       190       200       210       220       230     

>>CCDS33650.1 PDGFB gene_id:5155|Hs108|chr22              (226 aa)
 initn: 504 init1: 395 opt: 471  Z-score: 564.5  bits: 111.5 E(32554): 4e-25
Smith-Waterman score: 471; 46.7% identity (70.3% similar) in 165 aa overlap (25-183:10-169)

               10        20        30        40        50          
pF1KB7 MRTLACLLLLGCGYLAHVLAEEAEIPREVIERLARSQIHSIRDLQRLLEIDSVGSEDS--
                               ::.:. : :.  .:.:. ::::::. :  : ::.  
CCDS33                MFIMGLGDPIPEELYEMLSDHSIRSFDDLQRLLHGDP-GEEDGAE
                              10        20        30         40    

       60         70        80        90          100       110    
pF1KB7 LDTSL-RAHGVHATKHVPEKRPLPIRRKRSIEEAVPAV---CKTRTVIYEIPRSQVDPTS
       :: .. :.:.    . . . :    :   :.  : ::.   ::::: ..:: :  .: :.
CCDS33 LDLNMTRSHSGGELESLARGR----RSLGSLTIAEPAMIAECKTRTEVFEISRRLIDRTN
           50        60            70        80        90       100

          120       130       140       150       160       170    
pF1KB7 ANFLIWPPCVEVKRCTGCCNTSSVKCQPSRVHHRSVKVAKVEYVRKKPKLKEVQVRLEEH
       ::::.:::::::.::.::::. .:.:.:..:. : :.: :.: ::::: .:.. : ::.:
CCDS33 ANFLVWPPCVEVQRCSGCCNNRNVQCRPTQVQLRPVQVRKIEIVRKKPIFKKATVTLEDH
              110       120       130       140       150       160

          180       190                                            
pF1KB7 LECACATTSLNPDYREEDTDVR                                      
       : : : :..                                                   
CCDS33 LACKCETVAAARPVTRSPGGSQEQRAKTPQTRVTIRTVRVRRPPKGKHRKFKHTHDKTAL
              170       180       190       200       210       220




196 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 06:26:06 2016 done: Fri Nov  4 06:26:06 2016
 Total Scan time:  2.150 Total Display time: -0.010

Function used was FASTA [36.3.4 Apr, 2011]
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